Provide template file:
Upload .pdb file
(one chain only)
Get template from
Chain to extract:
Give an alignment between target and template sequence (template on the bottom):
Each sequence should be on one continuous line, so that the alignment consists of two lines only.
Additionally, provide the target sequence's start position in the alignment.
Retain original conformations of conserved residues:
A. A. Canutescu, A. A. Shelenkov, and R. L. Dunbrack, Jr. A graph theory algorithm for protein side-chain prediction. Protein Science 12, 2001-2014 (2003).
S.F. Altschul et al., "Basic local alignment search tool," Journal of Molecular Biology, 215:403-10, 1990.
Joint Center for Structrual Genomics
Center for Research in Biological Systems