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Target ID: 418973
Target Name:SP17471A  Protein Accession:NP_388160.1  Local Accession: SP17471A  cDNA Accession:REF|NC_000964.2|:C300054-298990  PSCA PDB:4r4g

Hover over nodes to see experimental data. Click on nodes to go to that point in the data below.

Proposed Target  
 
Active Target  
 
PCR Testing  
 
Amplifer Generation  
 
Orientation  
 
Plasmid Purification  
 
Micro Expression  
 
Expression  
 
Protein Purification  
 
Crystallization  
 
Crystal Hit  
 
SDC Receiving  
 
Screening  
 
Data Collection  
 
Integration  
 
Scaling  
 
Truncating  
 
Phasing  
 
Density Modification  
 
Tracing  
 
Refining  
 
QC  
 
Validation  
 
PDB Deposition  
 
Proposed Target
 
Active Target
 
PCR Testing
 
Amplifer Generation
 
Orientation
 
Plasmid Purification
 
Micro Expression
 
Expression
 
Protein Purification
 
Crystallization
 
Crystal Hit
 
SDC Receiving
 
Screening
 
Data Collection
 
Integration
 
Scaling
 
Truncating
 
Phasing
 
Density Modification
 
Tracing
 
Refining
 
QC
 
Validation
 
PDB Deposition
 
 
Status View
 
Chrono View
 
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1
Name: Putative lipoprotein ycdA, two domain protein, N-terminal domain has Ig-like fold, belongs to DUF4352 family (PF11611), C-terminal domain has fold: alpha(2)-beta(2)-alpha(2)-beta-alpha; domains connected by kinked-helix  Start Position: 30  End Position: 354
GNF Target Alias: HK100:SpeedET-SP17471A-bsu-354-30-354  Sequence Type: SEGMENT  Residues: 325
DNA Length: 975  Molecular Weight: 35993.00  Isoelectric Point: 4.78
Epsilon 280: 29340  Gravy Index: -0.74  Species: B. subtilis
Activated: 1  Alanine Absolute: 25  Alanine Relative: 0.0769
Arginine Absolute: 2  Arginine Relative: 0.0062  Asparagine Absolute: 16
Asparagine Relative: 0.0492  Aspartic Acid Absolute: 36  Aspartic Acid Relative: 0.1108
Cysteine Absolute: 0  Cysteine Relative: 0.0000  Glutamic Acid Absolute: 25
Glutamic Acid Relative: 0.0769  Glutamine Absolute: 10  Glutamine Relative: 0.0308
Glycine Absolute: 14  Glycine Relative: 0.0431  Histidine Absolute: 0
Histidine Relative: 0.0000  Isoleucine Absolute: 15  Isoleucine Relative: 0.0462
Leucine Absolute: 22  Leucine Relative: 0.0677  Lysine Absolute: 45
Lysine Relative: 0.1385  Methionine Absolute: 4  Methionine Relative: 0.0123
Phenylalanine Absolute: 9  Phenylalanine Relative: 0.0277  Proline Absolute: 8
Proline Relative: 0.0246  Serine Absolute: 36  Serine Relative: 0.1108
Threonine Absolute: 17  Threonine Relative: 0.0523  Tryptophan Absolute: 1
Tryptophan Relative: 0.0031  Tyrosine Absolute: 16  Tyrosine Relative: 0.0492
Valine Absolute: 24  Valine Relative: 0.0738  Project: GNF Autogenerated
Selection Date: 2009-11-12  PFAM: submit  
ProposalRelationshipOwnerLab Name
87JCSGGNFGenomics Institute of the Novartis Research Foundation

STAGE: Proposed Target

STAGE: Active Target

STAGE: PCR Testing

STAGE: Amplifer Generation

STAGE: Orientation

STAGE: Plasmid Purification

STAGE: Micro Expression

STAGE: Expression

STAGE: Protein Purification

STAGE: Crystallization

STAGE: Crystal Hit