JCSG Publications
Structural Publications
Methodological and Other Publications
Average number of citations per publication (structural): 7.4
Average number of citations per publication (methodological): 35.6
Methodological and Other Publications
Structural Publications
(2011)
The FGGY Carbohydrate Kinase Family: Insights into the Evolution of Functional Specificities.
PLoS Computational Biology, 7, e1002318 (Pub Med ID: 22215998)
Times cited: no data
(2011)
Structural Analysis of Papain-Like NlpC/P60 Superfamily Enzymes with a Circularly Permuted Topology Reveals Potential Lipid Binding Sites.
PloS one, 6, e22013 (Pub Med ID: 21799766)
Times cited: 0
(2011)
Structural and sequence analysis of imelysin-like proteins implicated in bacterial iron uptake.
PloS one, 6, e21875 (Pub Med ID: 21799754)
Times cited: 0
(2011)
Crystal structure of a metal-dependent phosphoesterase (YP_910028.1) from Bifidobacterium adolescentis: Computational prediction and experimental validation of phosphoesterase activity.
Proteins, 79, 2146-60 (Pub Med ID: 21538547) (PDB: 3E0F) (PDB: 3O0F)
Times cited: 0
(2011)
NMR structure of the Bordetella bronchiseptica protein NP_888769.1 establishes a new phage-related protein family PF13554.
Protein Science, 20, 1137-44 (Pub Med ID: 21520320)
Times cited: no data
(2011)
Structure and function of the first full-length murein Peptide ligase (mpl) cell wall recycling protein.
PloS one, 6, e17624 (Pub Med ID: 21445265) (PDB: 3HN7)
Times cited: 0
(2011)
Crystal Structure of the Human N-Myc Downstream-regulated Gene 2 Protein Provides Insight into Its Role as a Tumor Suppressor.
Journal of Biological Chemistry, 286, 12450-60 (Pub Med ID: 21247902) (PDB: 2XMQ) (PDB: 2XMR) (PDB: 2XMS) (PDB: 2QMQ)
Times cited: 0
(2010)
Comparison of NMR and crystal structures highlights conformational isomerism in protein active sites.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1393-405 (Pub Med ID: 20944236) (PDB: 2KA5) (PDB: 2KL2)
Times cited: 2
(2010)
Comparison of NMR and crystal structures for the proteins TM1112 and TM1367.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1381-92 (Pub Med ID: 20944235) (PDB: 2K9Z) (PDB: 2KA0)
Times cited: 4
(2010)
NMR structure of the protein NP_247299.1: comparison with the crystal structure.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1367-80 (Pub Med ID: 20944234) (PDB: 2KLA)
Times cited: 2
(2010)
Structure of the γ-D-glutamyl-L-diamino acid endopeptidase YkfC from Bacillus cereus in complex with L-Ala-γ-D-Glu: insights into substrate recognition by NlpC/P60 cysteine peptidases.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1354-64 (Pub Med ID: 20944232) (PDB: 3H41)
Times cited: 3
(2010)
Conformational changes associated with the binding of zinc acetate at the putative active site of XcTcmJ, a cupin from Xanthomonas campestris pv. campestris.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1347-53 (Pub Med ID: 20944231) (PDB: 3H50)
Times cited: 2
(2010)
Structures of three members of Pfam PF02663 (FmdE) implicated in microbial methanogenesis reveal a conserved α+β core domain and an auxiliary C-terminal treble-clef zinc finger.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1335-46 (Pub Med ID: 20944230) (PDB: 2GLZ) (PDB: 2GVI) (PDB: 3D00)
Times cited: 2
(2010)
Structure of a tryptophanyl-tRNA synthetase containing an iron-sulfur cluster.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1326-34 (Pub Med ID: 20944229) (PDB: 2G36)
Times cited: 1
(2010)
The structure of Haemophilus influenzaeprephenate dehydrogenase suggests unique features of bifunctional TyrA enzymes.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1317-25 (Pub Med ID: 20944228) (PDB: 2PV7)
Times cited: 0
(2010)
Ligands in crystal structures that aid in functional characterization.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1306-8 (Pub Med ID: 20944226)
Times cited: 1
(2010)
Structure of a membrane-attack complex/perforin (MACPF) family protein from the human gut symbiont Bacteroides thetaiotaomicron.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1297-305 (Pub Med ID: 20944225) (PDB: 3KK7)
Times cited: 2
(2010)
Structure of Bacteroides thetaiotaomicron BT2081 at 2.05 Å resolution: the first structural representative of a new protein family that may play a role in carbohydrate metabolism.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1287-96 (Pub Med ID: 20944224) (PDB: 3HBZ)
Times cited: 0
(2010)
A conserved fold for fimbrial components revealed by the crystal structure of a putative fimbrial assembly protein (BT1062) from Bacteroides thetaiotaomicron at 2.2 Å resolution.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1281-6 (Pub Med ID: 20944223) (PDB: 3GF8)
Times cited: 1
(2010)
Structure of BT_3984, a member of the SusD/RagB family of nutrient-binding molecules.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1274-80 (Pub Med ID: 20944222) (PDB: 3CGH)
Times cited: 0
(2010)
The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1265-73 (Pub Med ID: 20944221) (PDB: 3DUE)
Times cited: 1
(2010)
The structure of KPN03535 (gi|152972051), a novel putative lipoprotein from Klebsiella pneumoniae, reveals an OB-fold.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1254-60 (Pub Med ID: 20944219) (PDB: 3F1Z)
Times cited: 1
(2010)
Open and closed conformations of two SpoIIAA-like proteins (YP_749275.1 and YP_001095227.1) provide insights into membrane association and ligand binding.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1245-53 (Pub Med ID: 20944218) (PDB: 2OOK) (PDB: 2Q3L)
Times cited: 4
(2010)
Structure of a putative NTP pyrophosphohydrolase: YP_001813558.1 from Exiguobacterium sibiricum 255-15.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1237-44 (Pub Med ID: 20944217) (PDB: 3NL9)
Times cited: 2
(2010)
Structure of an essential bacterial protein YeaZ (TM0874) from Thermotoga maritima at 2.5 Å resolution.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1230-6 (Pub Med ID: 20944216) (PDB: 2A6A)
Times cited: 5
(2010)
Structures of the first representatives of Pfam family PF06938 (DUF1285) reveal a new fold with repeated structural motifs and possible involvement in signal transduction.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1218-25 (Pub Med ID: 20944214) (PDB: 2RE3) (PDB: 2RA9)
Times cited: 1
(2010)
The structure of the first representative of Pfam family PF06475 reveals a new fold with possible involvement in glycolipid metabolism.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1211-7 (Pub Med ID: 20944213) (PDB: 2H1T)
Times cited: 2
(2010)
Structure of LP2179, the first representative of Pfam family PF08866, suggests a new fold with a role in amino-acid metabolism.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1205-10 (Pub Med ID: 20944212) (PDB: 2IAY)
Times cited: 1
(2010)
The structure of Jann_2411 (DUF1470) from Jannaschia sp. at 1.45 Å resolution reveals a new fold (the ABATE domain) and suggests its possible role as a transcription regulator.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1198-204 (Pub Med ID: 20944211) (PDB: 3H0N)
Times cited: 4
(2010)
Structures of the first representatives of Pfam family PF06684 (DUF1185) reveal a novel variant of the Bacillus chorismate mutase fold and suggest a role in amino-acid metabolism.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1182-9 (Pub Med ID: 20944209) (PDB: 3BYQ) (PDB: 2QTP)
Times cited: 0
(2010)
The structure of the first representative of Pfam family PF09836 reveals a two-domain organization and suggests involvement in transcriptional regulation.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1174-81 (Pub Med ID: 20944208) (PDB: 3DEE)
Times cited: 0
(2010)
Structure of the first representative of Pfam family PF04016 (DUF364) reveals enolase and Rossmann-like folds that combine to form a unique active site with a possible role in heavy-metal chelation.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1167-73 (Pub Med ID: 20944207) (PDB: 3L5O)
Times cited: 0
(2010)
The structure of SSO2064, the first representative of Pfam family PF01796, reveals a novel two-domain zinc-ribbon OB-fold architecture with a potential acyl-CoA-binding role.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1160-6 (Pub Med ID: 20944206) (PDB: 3IRB)
Times cited: 2
(2010)
Structure of the first representative of Pfam family PF09410 (DUF2006) reveals a structural signature of the calycin superfamily that suggests a role in lipid metabolism.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1153-9 (Pub Med ID: 20944205) (PDB: 2ICH)
Times cited: 2
(2010)
Insights into substrate specificity of geranylgeranyl reductases revealed by the structure of digeranylgeranylglycerophospholipid reductase, an essential enzyme in the biosynthesis of archaeal membrane lipids.
Journal of Molecular Biology, 404, 403-17 (Pub Med ID: 20869368) (PDB: 3OZ2)
Times cited: 1
(2010)
The crystal structure of a bacterial Sufu-like protein defines a novel group of bacterial proteins that are similar to the N-terminal domain of human Sufu.
Protein Science, 19, 2131-40 (Pub Med ID: 20836087) (PDB: 3K5J)
Times cited: 2
(2010)
NMR Structure of the SARS-CoV Nonstructural Protein 7 in Solution at pH 6.5.
Journal of Molecular Biology, 402, 619-28 (Pub Med ID: 20709084) (PDB: 2KYS)
Times cited: 2
(2010)
Expansion of the protein repertoire in newly explored environments: human gut microbiome specific protein families.
PLoS Computational Biology, 6, e1000798 (Pub Med ID: 20532204)
Times cited: 7
(2010)
SARS coronavirus unique domain: three-domain molecular architecture in solution and RNA binding.
Journal of Molecular Biology, 400, 724-42 (Pub Med ID: 20493876) (PDB: 2KAF) (PDB: 2KQV) (PDB: 2KQW)
Times cited: 0
(2010)
TM0486 from the hyperthermophilic anaerobe Thermotoga maritima is a thiamin-binding protein involved in response of the cell to oxidative conditions.
Journal of Molecular Biology, 400, 463-76 (Pub Med ID: 20471400) (PDB: 1VK8)
Times cited: 1
(2010)
Structure of a virulence regulatory factor CvfB reveals a novel winged helix RNA binding module.
Structure, 18, 537-47 (Pub Med ID: 20399190) (PDB: 3GO5)
Times cited: 2
(2010)
Crystal Structure of the First Eubacterial Mre11 Nuclease Reveals Novel Features that May Discriminate Substrates During DNA Repair.
Journal of Molecular Biology, 397, 647-663 (Pub Med ID: 20122942) (PDB: 2Q8U)
Times cited: 6
(2010)
Genomics, evolution, and crystal structure of a new family of bacterial spore kinases.
Proteins, 78, 1470-82 (Pub Med ID: 20077512) (PDB: 2Q83)
Times cited: 0
(2010)
Bacterial Pleckstrin Homology Domains: A Prokaryotic Origin for the PH Domain.
Journal of Molecular Biology, 396, 31-46 (Pub Med ID: 19913036) (PDB: 3DCX) (PDB: 3HSA) (PDB: 3B77)
Times cited: 1
(2009)
Nuclear magnetic resonance structure of the nucleic acid-binding domain of severe acute respiratory syndrome coronavirus nonstructural protein 3.
Journal of Virology, 83, 12998-3008 (Pub Med ID: 19828617) (PDB: 2K87)
Times cited: 3
(2009)
Exploration of uncharted regions of the protein universe.
PLoS Biology, 7, e1000205 (Pub Med ID: 19787035)
Times cited: 15
(2009)
Three-dimensional structural view of the central metabolic network of Thermotoga maritima.
Science, 325, 1544-9 (Pub Med ID: 19762644)
Times cited: 31
(2009)
Structural and functional characterizations of SsgB, a conserved activator of developmental cell division in morphologically complex actinomycetes.
Journal of Biological Chemistry, 284, 25268-79 (Pub Med ID: 19567872) (PDB: 3CM1)
Times cited: 5
(2009)
Oxidase activity of a flavin-dependent thymidylate synthase.
FEBS Journal, 276, 2801-10 (Pub Med ID: 19459936) (PDB: 1024) (PDB: 1025) (PDB: 1026) (PDB: 1027) (PDB: 1028) (PDB: 102B) (PDB: 1029) (PDB: 102A) (PDB: 1KQ4)
Times cited: 2
(2009)
Crystal structure of histidine phosphotransfer protein ShpA, an essential regulator of stalk biogenesis in Caulobacter crescentus.
Journal of Molecular Biology, 390, 686-98 (Pub Med ID: 19450606) (PDB: 2OOC)
Times cited: 2
(2009)
An unusual mechanism of thymidylate biosynthesis in organisms containing the thyX gene.
Nature, 458, 919-23 (Pub Med ID: 19370033) (PDB: 1O24) (PDB: 1O25) (PDB: 1O26) (PDB: 1O27) (PDB: 1O28) (PDB: 1O2B) (PDB: 1029) (PDB: 1O2A) (PDB: 1KQ4)
Times cited: 15
(2009)
Structure of Thermotoga maritima TM0439: implications for the mechanism of bacterial GntR transcription regulators with Zn2+-binding FCD domains.
Acta Crystallographica Section D: Biological Crystallography, 65, 356-65 (Pub Med ID: 19307717) (PDB: 3FMS)
Times cited: 1
(2009)
Structural Basis of Murein Peptide Specificity of a gamma-D-Glutamyl-L-Diamino Acid Endopeptidase.
Structure, 17, 303-313 (Pub Med ID: 19217401) (PDB: 2HBW) (PDB: 2FG0) (PDB: 2EVR)
Times cited: 8
(2009)
The Thermotoga maritima Trk potassium transporter--from frameshift to function.
Journal of Bacteriology, 191, 2276-84 (Pub Med ID: 19168617) (PDB: 2G1U)
Times cited: 1
(2009)
Crystal structure of the Fic (Filamentation induced by cAMP) family protein SO4266 (gi|24375750) from Shewanella oneidensis MR-1 at 1.6 A resolution.
Proteins, 75, 264-71 (Pub Med ID: 19127588) (PDB: 3EQX)
Times cited: 7
(2009)
Crystal structure of a novel archaeal AAA+ ATPase SSO1545 from Sulfolobus solfataricus.
Proteins, 74, 1041-9 (Pub Med ID: 19089981) (PDB: 2FNA)
Times cited: 1
(2009)
Nuclear magnetic resonance structure shows that the severe acute respiratory syndrome coronavirus-unique domain contains a macrodomain fold.
Journal of Virology, 83, 1823-36 (Pub Med ID: 19052085) (PDB: 2RNK) (PDB: 2JZD) (PDB: 2JZF) (PDB: 2JZE)
Times cited: 10
(2009)
A structural basis for the regulatory inactivation of DnaA.
Journal of Molecular Biology, 385, 368-80 (Pub Med ID: 19000695) (PDB: 3BOS)
Times cited: 5
(2008)
NMR assignment of the nonstructural protein nsp3(1066-1181) from SARS-CoV.
Biomolecular NMR Assignments, 2, 135-8 (Pub Med ID: 19636888) (PDB: 2K87)
Times cited: 2
(2008)
Crystal structure of a novel Sm-like protein of putative cyanophage origin at 2.60 A resolution.
Proteins, 75, 296-307 (Pub Med ID: 19173316) (PDB: 3BY7)
Times cited: no data
(2008)
Structure and ligand binding of the soluble domain of a Thermotoga maritima membrane protein of unknown function TM1634.
Protein Science, 17(5), 869-77 (Pub Med ID: 18369189)
Times cited: 1
(2008)
Proteomics analysis unravels the functional repertoire of coronavirus nonstructural protein 3.
Journal of Virology, 82, 5279-94 (Pub Med ID: 18367524)
Times cited: 26
(2008)
Crystal structures of MW1337R and lin2004: representatives of a novel protein family that adopt a four-helical bundle fold.
Proteins, 71(3), 1589-96 (Pub Med ID: 18324683) (PDB: 2ETS) (PDB: 2HUJ)
Times cited: 0
(2008)
Crystal structure of an ADP-ribosylated protein with a cytidine deaminase-like fold, but unknown function (TM1506), from Thermotoga maritima at 2.70 A resolution.
Proteins, 71(3), 1546-52 (Pub Med ID: 18275082) (PDB: 1VK9)
Times cited: 2
(2008)
Crystal structure of AICAR transformylase IMP cyclohydrolase (TM1249) from Thermotoga maritima at 1.88 A resolution.
Proteins, 71(2), 1042-9 (Pub Med ID: 18260100) (PDB: 1ZCZ)
Times cited: 3
(2008)
Crystal structure of 2-keto-3-deoxygluconate kinase (TM0067) from Thermotoga maritima at 2.05 A resolution.
Proteins, 70(2), 603-8 (Pub Med ID: 18004772) (PDB: 2AFB)
Times cited: 2
(2007)
NMR assignment of the domain 513-651 from the SARS-CoV nonstructural protein nsp3.
Biomolecular NMR Assignments, 1, 191-4 (Pub Med ID: 19636862) (PDB: 2RNK) (PDB: 2JZF)
Times cited: 3
(2007)
Nuclear magnetic resonance structure of the N-terminal domain of nonstructural protein 3 from the severe acute respiratory syndrome coronavirus.
Journal of Virology, 81(21), 12049-60 (Pub Med ID: 17728234) (PDB: 2GRI) (PDB: 2IDY)
Times cited: 14
(2007)
Reactivation of methionine synthase from Thermotoga maritima (TM0268) requires the downstream gene product TM0269.
Protein Science, 16(8), 1588-95 (Pub Med ID: 17656578)
Times cited: 1
(2007)
Crystal structure of MtnX phosphatase from Bacillus subtilis at 2.0 A resolution provides a structural basis for bipartite phosphomonoester hydrolysis of 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate.
Proteins, 69(2), 433-9 (Pub Med ID: 17654724) (PDB: 2FEA)
Times cited: 1
(2007)
Identification and structural characterization of heme binding in a novel dye-decolorizing peroxidase, TyrA.
Proteins, 69(2), 234-43 (Pub Med ID: 17654547) (PDB: 2IIZ)
Times cited: 20
(2007)
Crystal structures of two novel dye-decolorizing peroxidases reveal a beta-barrel fold with a conserved heme-binding motif.
Proteins, 69(2), 223-33 (Pub Med ID: 17654545) (PDB: 2GVK) (PDB: 2HAG)
Times cited: 18
(2007)
Crystal structure of NMA1982 from Neisseria meningitidis at 1.5 A resolution provides a structural scaffold for nonclassical, eukaryotic-like phosphatases.
Proteins, 69(2), 415-21 (Pub Med ID: 17636569) (PDB: 2F46)
Times cited: 3
(2007)
The relationships between oxidase and synthase activities of flavin dependent thymidylate synthase (FDTS).
Chemical Communications, 53, 2861-3 (Pub Med ID: 17609801)
Times cited: 3
(2007)
Crystal structure of homoserine O-succinyltransferase from Bacillus cereus at 2.4 A resolution.
Proteins, 68(4), 999-1005 (Pub Med ID: 17546672) (PDB: 2GHR)
Times cited: 5
(2007)
Crystal structure of TM1030 from Thermotoga maritima at 2.3 A resolution reveals molecular details of its transcription repressor function.
Proteins, 68(1), 418-24 (Pub Med ID: 17444523) (PDB: 1ZKG)
Times cited: 3
(2007)
Crystal structure of a transcription regulator (TM1602) from Thermotoga maritima at 2.3 A resolution.
Proteins, 67(1), 247-52 (Pub Med ID: 17256761) (PDB: 1J5Y)
Times cited: 1
(2007)
Novel beta-barrel fold in the nuclear magnetic resonance structure of the replicase nonstructural protein 1 from the severe acute respiratory syndrome coronavirus.
Journal of Virology, 81(7), 3151-61 (Pub Med ID: 17202208) (PDB: 2HSX)
Times cited: 17
(2006)
Comparative structural analysis of a novel glutathioneS-transferase (ATU5508) from Agrobacterium tumefaciens at 2.0 A resolution.
Proteins, 65(3), 527-37 (Pub Med ID: 16988933) (PDB: 2FNO)
Times cited: 3
(2006)
Crystal structure of an ORFan protein (TM1622) from Thermotoga maritima at 1.75 A resolution reveals a fold similar to the Ran-binding protein Mog1p.
Proteins, 65(3), 777-82 (Pub Med ID: 16948158) (PDB: 1VR8)
Times cited: 4
(2006)
Crystal structure of 2-phosphosulfolactate phosphatase (ComB) from Clostridium acetobutylicum at 2.6 A resolution reveals a new fold with a novel active site.
Proteins, 65(3), 771-6 (Pub Med ID: 16927339) (PDB: 1VR0)
Times cited: 2
(2006)
Crystal structure of phosphoribosylformyl-glycinamidine synthase II, PurS subunit (TM1244) from Thermotoga maritima at 1.90 A resolution.
Proteins, 65(1), 249-54 (Pub Med ID: 16865708) (PDB: 1VQ3)
Times cited: 3
(2006)
Crystal structure of a glycerate kinase (TM1585) from Thermotoga maritima at 2.70 A resolution reveals a new fold.
Proteins, 65(1), 243-8 (Pub Med ID: 16865707) (PDB: 2B8N)
Times cited: 4
(2006)
Crystal structure of a divalent metal ion transporter CorA at 2.9 angstrom resolution.
Science, 313(5785), 354-7 (Pub Med ID: 16857941)
Times cited: 64
(2006)
Solution structures of the putative anti-sigma-factor antagonist TM1442 from Thermotoga maritima in the free and phosphorylated states.
Magnetic Resonance in Chemistry, 44 Spec No(16), S61-70 (Pub Med ID: 16826544) (PDB: 1SBO) (PDB: 1T6R)
Times cited: 5
(2006)
NMR assignment of the SARS-CoV protein nsp1.
Journal of Biomolecular NMR, 36 Suppl 1(4), 46 (Pub Med ID: 16821128)
Times cited: 6
(2006)
NMR assignment of the protein nsp3a from SARS-CoV.
Journal of Biomolecular NMR, 36 Suppl 1(1), 45 (Pub Med ID: 16799860)
Times cited: 2
(2006)
Crystal structure of acireductone dioxygenase (ARD) from Mus musculus at 2.06 angstrom resolution.
Proteins, 64(3), 808-13 (Pub Med ID: 16783794) (PDB: 1VR3)
Times cited: 10
(2006)
Crystal structure of the ApbE protein (TM1553) from Thermotoga maritima at 1.58 A resolution.
Proteins, 64(4), 1083-90 (Pub Med ID: 16779835) (PDB: 1VRM)
Times cited: 4
(2006)
A lag-phase in the reduction of flavin dependent thymidylate synthase (FDTS) revealed a mechanistic missing link.
Chemical Communications, 21(3)(16), 1781-3 (Pub Med ID: 16609803)
Times cited: 7
(2006)
Solution structure of Asl1650, an acyl carrier protein from Anabaena sp. PCC 7120 with a variant phosphopantetheinylation-site sequence.
Protein Science, 15(5), 1030-41 (Pub Med ID: 16597827)
Times cited: 10
(2006)
Crystal structure of phosphoribosylformylglycinamidine synthase II (smPurL) from Thermotoga maritima at 2.15 A resolution.
Proteins, 63(4), 1106-11 (Pub Med ID: 16544324) (PDB: 1VK3)
Times cited: 5
(2006)
Crystal structure of TM1367 from Thermotoga maritima at 1.90 A resolution reveals an atypical member of the cyclophilin (peptidylprolyl isomerase) fold.
Proteins, 63(4), 1112-8 (Pub Med ID: 16544291) (PDB: 1ZX8)
Times cited: 4
(2006)
Crystal structure of a single-stranded DNA-binding protein (TM0604) from Thermotoga maritima at 2.60 A resolution.
Proteins, 63(1), 256-60 (Pub Med ID: 16435371) (PDB: 1Z9F)
Times cited: 9
(2006)
Contribution of electrostatic interactions, compactness and quaternary structure to protein thermostability: lessons from structural genomics of Thermotoga maritima.
Journal of Molecular Biology, 356(2), 547-57 (Pub Med ID: 16375925)
Times cited: 59
(2006)
Crystal structure of virulence factor CJ0248 from Campylobacter jejuni at 2.25 A resolution reveals a new fold.
Proteins, 62(1), 292-6 (Pub Med ID: 16287129) (PDB: 1VQR)
Times cited: 1
(2005)
Crystal structure of a conserved hypothetical protein (gi: 13879369) from Mouse at 1.90 A resolution reveals a new fold.
Proteins, 61(4), 1132-6 (Pub Med ID: 16224779) (PDB: 1VKB)
Times cited: 6
(2005)
NMR structure of the conserved hypothetical protein TM0487 from Thermotoga maritima: implications for 216 homologous DUF59 proteins.
Protein Science, 14(11), 2880-6 (Pub Med ID: 16199668)
Times cited: 3
(2005)
Structural genomics of the severe acute respiratory syndrome coronavirus: nuclear magnetic resonance structure of the protein nsP7.
Journal of Virology, 79(20), 12905-13 (Pub Med ID: 16188992)
Times cited: 26
(2005)
Crystal structure of Hsp33 chaperone (TM1394) from Thermotoga maritima at 2.20 A resolution.
Proteins, 61(3), 669-73 (Pub Med ID: 16167343) (PDB: 1VQ0)
Times cited: 4
(2005)
The structure of a eukaryotic nicotinic acid phosphoribosyltransferase reveals structural heterogeneity among type II PRTases.
Structure, 13(9), 1385-96 (Pub Med ID: 16154095) (PDB: 1VLP)
Times cited: 17
(2005)
Crystal structure of a putative modulator of DNA gyrase (pmbA) from Thermotoga maritima at 1.95 A resolution reveals a new fold.
Proteins, 61(2), 444-8 (Pub Med ID: 16104019) (PDB: 1VL4)
Times cited: 1
(2005)
Crystal structure of the global regulatory protein CsrA from Pseudomonas putida at 2.05 A resolution reveals a new fold.
Proteins, 61(2), 449-53 (Pub Med ID: 16104018) (PDB: 1VPZ)
Times cited: 13
(2005)
Crystal structure of an Apo mRNA decapping enzyme (DcpS) from Mouse at 1.83 A resolution.
Proteins, 60(4), 797-802 (Pub Med ID: 16001405) (PDB: 1VLR)
Times cited: 5
(2005)
Structural genomics of thermotoga maritima proteins shows that contact order is a major determinant of protein thermostability.
Structure, 13(6), 857-60 (Pub Med ID: 15939017)
Times cited: 29
(2005)
NMR structure determination of the conserved hypothetical protein TM1816 from Thermotoga maritima.
Proteins, 60(3), 552-7 (Pub Med ID: 15937903) (PDB: 1T3V)
Times cited: 5
(2005)
Crystal structure of S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA) from Thermotoga maritima at 2.0 A resolution reveals a new fold.
Proteins, 59(4), 869-74 (Pub Med ID: 15822125) (PDB: 1VKY)
Times cited: 6
(2005)
Crystal structure of an indigoidine synthase A (IndA)-like protein (TM1464) from Thermotoga maritima at 1.90 A resolution reveals a new fold.
Proteins, 59(4), 864-8 (Pub Med ID: 15822122) (PDB: 1VKM)
Times cited: 5
(2005)
NMR structure of the conserved hypothetical protein TM0979 from Thermotoga maritima.
Proteins, 59(2), 387-90 (Pub Med ID: 15723348)
Times cited: 4
(2005)
The structure of the neurotoxin-associated protein HA33/A from Clostridium botulinum suggests a reoccurring beta-trefoil fold in the progenitor toxin complex.
Journal of Molecular Biology, 346, 1083-93 (Pub Med ID: 15701519) (PDB: 1YBI)
Times cited: 24
(2005)
Crystal structure of an alanine-glyoxylate aminotransferase from Anabaena sp. at 1.70 A resolution reveals a noncovalently linked PLP cofactor.
Proteins, 58(4), 971-5 (Pub Med ID: 15657930) (PDB: 1VJO)
Times cited: 9
(2005)
Crystal structure of a formiminotetrahydrofolate cyclodeaminase (TM1560) from Thermotoga maritima at 2.80 A resolution reveals a new fold.
Proteins, 58(4), 976-81 (Pub Med ID: 15651027) (PDB: 1O5H)
Times cited: 1
(2005)
Crystal structure of an alpha/beta serine hydrolase (YDR428C) from Saccharomyces cerevisiae at 1.85 A resolution.
Proteins, 58(3), 755-8 (Pub Med ID: 15624212) (PDB: 1VKH)
Times cited: 5
(2004)
Crystal structure of a tandem cystathionine-beta-synthase (CBS) domain protein (TM0935) from Thermotoga maritima at 1.87 A resolution.
Proteins, 57(1), 213-7 (Pub Med ID: 15326606) (PDB: 1O50)
Times cited: 25
(2004)
A flexible activin explains the membrane-dependent cooperative assembly of TGF-beta family receptors.
Molecular Cell, 15(3), 485-9 (Pub Med ID: 15304227) (PDB: 1S4Y)
Times cited: 55
(2004)
Mechanistic studies of a flavin-dependent thymidylate synthase.
Biochemistry, 43(32), 10295-301 (Pub Med ID: 15301527)
Times cited: 31
(2004)
Crystal structure of a putative NADPH-dependent oxidoreductase (GI: 18204011) from mouse at 2.10 A resolution.
Proteins, 56(3), 629-33 (Pub Med ID: 15229897) (PDB: 1VJ1)
Times cited: 5
(2004)
Crystal structure of an allantoicase (YIR029W) from Saccharomyces cerevisiae at 2.4 A resolution.
Proteins, 56(3), 619-24 (Pub Med ID: 15229895) (PDB: 1O59)
Times cited: 2
(2004)
Crystal structure of a novel Thermotoga maritima enzyme (TM1112) from the cupin family at 1.83 A resolution.
Proteins, 56(3), 615-8 (Pub Med ID: 15229894) (PDB: 1O5U)
Times cited: 3
(2004)
Crystal structure of a novel manganese-containing cupin (TM1459) from Thermotoga maritima at 1.65 A resolution.
Proteins, 56(3), 611-4 (Pub Med ID: 15229893) (PDB: 1O5N)
Times cited: 8
(2004)
Crystal structure of an orphan protein (TM0875) from Thermotoga maritima at 2.00-A resolution reveals a new fold.
Proteins, 56(3), 607-10 (Pub Med ID: 15229892) (PDB: 1O22)
Times cited: 2
(2004)
1H-, 13C- and 15N-NMR assignment of the conserved hypothetical protein TM0487 from Thermotoga maritima.
Journal of Biomolecular NMR, 29(3), 453-4 (Pub Med ID: 15213465)
Times cited: 3
(2004)
NMR structure determination of the hypothetical protein TM1290 from Thermotoga maritima using automated NOESY analysis.
Journal of Biomolecular NMR, 29(3), 403-6 (Pub Med ID: 15213441) (PDB: 1RDU)
Times cited: 15
(2004)
Crystal structure of a PIN (PilT N-terminus) domain (AF0591) from Archaeoglobus fulgidus at 1.90 A resolution.
Proteins, 56(2), 404-8 (Pub Med ID: 15211526) (PDB: 1O4W)
Times cited: 10
(2004)
Crystal structure of a methionine aminopeptidase (TM1478) from Thermotoga maritima at 1.9 A resolution.
Proteins, 56(2), 396-400 (Pub Med ID: 15211524) (PDB: 1O0X)
Times cited: 9
(2004)
Crystal structure of a putative oxalate decarboxylase (TM1287) from Thermotoga maritima at 1.95 A resolution.
Proteins, 56(2), 392-5 (Pub Med ID: 15211523) (PDB: 1O4T)
Times cited: 12
(2004)
Crystal structure of O-acetylserine sulfhydrylase (TM0665) from Thermotoga maritima at 1.8 A resolution.
Proteins, 56(2), 387-91 (Pub Med ID: 15211522) (PDB: 1O58)
Times cited: 8
(2004)
Crystal structure of a ribose-5-phosphate isomerase RpiB (TM1080) from Thermotoga maritima at 1.90 A resolution.
Proteins, 56(1), 171-5 (Pub Med ID: 15162497) (PDB: 1O1X)
Times cited: 9
(2004)
Crystal structure of a glycerophosphodiester phosphodiesterase (GDPD) from Thermotoga maritima (TM1621) at 1.60 A resolution.
Proteins, 56(1), 167-70 (Pub Med ID: 15162496) (PDB: 1O1Z)
Times cited: 10
(2004)
Predicted role for the archease protein family based on structural and sequence analysis of TM1083 and MTH1598, two proteins structurally characterized through structural genomics efforts.
Proteins, 56(1), 19-27 (Pub Med ID: 15162483)
Times cited: 4
(2004)
Crystal structure of an Udp-n-acetylmuramate-alanine ligase MurC (TM0231) from Thermotoga maritima at 2.3 A resolution.
Proteins, 55(4), 1078-81 (Pub Med ID: 15146505) (PDB: 1J6U)
Times cited: 15
(2004)
Crystal structure of a type II quinolic acid phosphoribosyltransferase (TM1645) from Thermotoga maritima at 2.50 A resolution.
Proteins, 55(3), 768-71 (Pub Med ID: 15103640) (PDB: 1QPN)
Times cited: 9
(2004)
Crystal structure of an aspartate aminotransferase (TM1255) from Thermotoga maritima at 1.90 A resolution.
Proteins, 55(3), 759-63 (Pub Med ID: 15103638) (PDB: 1O4S)
Times cited: 5
(2004)
NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1.
Trends in Biochemical Sciences, 29(3), 106-10 (Pub Med ID: 15055202)
Times cited: 1
(2004)
Crystal structure of a phosphoribosylaminoimidazole mutase PurE (TM0446) from Thermotoga maritima at 1.77-A resolution.
Proteins, 55(2), 474-8 (Pub Med ID: 15048837) (PDB: 1O4V)
Times cited: 6
(2004)
Crystal structure of a putative PII-like signaling protein (TM0021) from Thermotoga maritima at 2.5 A resolution.
Proteins, 54(4), 810-3 (Pub Med ID: 14997579) (PDB: 1O51)
Times cited: 14
(2004)
Crystal structure of an HEPN domain protein (TM0613) from Thermotoga maritima at 1.75 A resolution.
Proteins, 54(4), 806-9 (Pub Med ID: 14997578)
Times cited: 3
(2004)
Crystal structure of a putative glutamine amido transferase (TM1158) from Thermotoga maritima at 1.7 A resolution.
Proteins, 54(4), 801-5 (Pub Med ID: 14997577) (PDB: 1O1Y)
Times cited: 1
(2004)
Crystal structure of an iron-containing 1,3-propanediol dehydrogenase (TM0920) from Thermotoga maritima at 1.3 A resolution.
Proteins, 54(1), 174-7 (Pub Med ID: 14705036) (PDB: 1O2D)
Times cited: 18
(2004)
Crystal structure of gamma-glutamyl phosphate reductase (TM0293) from Thermotoga maritima at 2.0 A resolution.
Proteins, 54(1), 157-61 (Pub Med ID: 14705032)
Times cited: 6
(2003)
Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization.
BMC Bioinformatics, 4(5), 46 (Pub Med ID: 14536023)
Times cited: 18
(2003)
Crystal structure of uronate isomerase (TM0064) from Thermotoga maritima at 2.85 A resolution.
Proteins, 53(1), 142-5 (Pub Med ID: 12945057)
Times cited: 8
(2003)
Structure analysis of peptide deformylases from Streptococcus pneumoniae, Staphylococcus aureus, Thermotoga maritima and Pseudomonas aeruginosa: snapshots of the oxygen sensitivity of peptide deformylase.
Journal of Molecular Biology, 330(2), 309-21 (Pub Med ID: 12823970)
Times cited: 21
(2003)
Functional analysis of substrate and cofactor complex structures of a thymidylate synthase-complementing protein.
Structure, 11(6), 677-90 (Pub Med ID: 12791256)
Times cited: 37
(2003)
HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins.
Trends in Biochemical Sciences, 28(5), 224-6 (Pub Med ID: 12765831)
Times cited: 10
(2003)
NMR assignment of the conserved hypothetical protein TM1290 of Thermotoga maritima.
Journal of Biomolecular NMR, 25(2), 167-8 (Pub Med ID: 12652129)
Times cited: 10
(2003)
Crystal structure of a zinc-containing glycerol dehydrogenase (TM0423) from Thermotoga maritima at 1.5 A resolution.
Proteins, 50(2), 371-4 (Pub Med ID: 12486729)
Times cited: 6
(2002)
Crystal structure of thy1, a thymidylate synthase complementing protein from Thermotoga maritima at 2.25 A resolution.
Proteins, 49(1), 142-5 (Pub Med ID: 12211025)
Times cited: 30
2011
2010
2009
2008
2007
2006
2005
2004
2003
2002
Average number of citations per publication (structural): 7.4
Methodological and Other Publications
(2011)
Accessing protein conformational ensembles using room-temperature X-ray crystallography.
Proceedings of the National Academy of Sciences of the United States of America, 108, 16247-52 (Pub Med ID: 21918110)
Times cited: 0
(2011)
Solubilization of Native Integral Membrane Proteins in Aqueous Buffer by Noncovalent Chelation with Monomethoxy Poly(ethylene glycol) (mPEG) Polymers.
Bioconjugate chemistry, 22, 1513-8 (Pub Med ID: 21740061)
Times cited: 0
(2011)
Internal organization of large protein families: Relationship between the sequence, structure, and function-based clustering.
Proteins, 79, 2389-402 (Pub Med ID: 21671455)
Times cited: 0
(2011)
Improved molecular replacement by density- and energy-guided protein structure optimization.
Nature, 473, 540-3 (Pub Med ID: 21532589)
Times cited: 7
(2011)
Metagenomics and the protein universe.
Current Opinion in Structural Biology, 21, 398-403 (Pub Med ID: 21497084)
Times cited: 0
(2011)
Distributed structure determination at the JCSG.
Acta Crystallographica Section D: Biological Crystallography, 67, 368-75 (Pub Med ID: 21460455)
Times cited: 0
(2011)
Synthetic symmetrization in the crystallization and structure determination of CelA from Thermotoga maritima.
Protein Science, 20, 168-78 (Pub Med ID: 21082721)
Times cited: 1
(2011)
TOPSAN: a dynamic web database for structural genomics.
Nucleic Acids Research, 39, D494-6 (Pub Med ID: 20961957)
Times cited: 0
(2010)
NMR in a crystallography-based high-throughput protein structure-determination environment.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1365-6 (Pub Med ID: 20944233)
Times cited: 2
(2010)
Ligands in PSI structures.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1309-16 (Pub Med ID: 20944227)
Times cited: 5
(2010)
Viewing the human microbiome through three-dimensional glasses: integrating structural and functional studies to better define the properties of myriad carbohydrate-active enzymes.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1261-4 (Pub Med ID: 20944220)
Times cited: 0
(2010)
New variants of known folds: do they bring new biology?
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1226-9 (Pub Med ID: 20944215)
Times cited: 1
(2010)
Structural classification of proteins and structural genomics: new insights into protein folding and evolution.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1190-7 (Pub Med ID: 20944210)
Times cited: 3
(2010)
DUFs: families in search of function.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1148-52 (Pub Med ID: 20944204)
Times cited: 3
(2010)
TOPSAN: use of a collaborative environment for annotating, analyzing and disseminating data on JCSG and PSI structures.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1143-7 (Pub Med ID: 20944203)
Times cited: 26
(2010)
The JCSG high-throughput structural biology pipeline.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, 1137-42 (Pub Med ID: 20944202)
Times cited: 9
(2010)
TOPSAN: a collaborative annotation environment for structural genomics.
BMC Bioinformatics, 11, 426 (Pub Med ID: 20716366)
Times cited: 6
(2010)
Sequential nearest-neighbor effects on computed 13Calpha chemical shifts.
Journal of Biomolecular NMR, 48, 23-30 (Pub Med ID: 20644980)
Times cited: 2
(2010)
Screening the mammalian extracellular proteome for regulators of embryonic human stem cell pluripotency.
Proceedings of the National Academy of Sciences of the United States of America, 107, 3552-7 (Pub Med ID: 20133595)
Times cited: 9
(2009)
NMR characterization of membrane protein-detergent micelle solutions by use of microcoil equipment.
Journal of the American Chemical Society, 131, 18450-6 (Pub Med ID: 19950959)
Times cited: 2
(2009)
Modeling discrete heterogeneity in X-ray diffraction data by fitting multi-conformers.
Acta Crystallographica Section D: Biological Crystallography, 65, 1107-17 (Pub Med ID: 19770508)
Times cited: 8
(2009)
Applications of bioinformatics to protein structures: how protein structure and bioinformatics overlap.
Methods in Molecular Biology, 569, 157-72 (Pub Med ID: 19623490)
Times cited: 0
(2009)
PSI-2: structural genomics to cover protein domain family space.
Structure, 17, 869-81 (Pub Med ID: 19523904)
Times cited: 41
(2009)
Mixing and matching detergents for membrane protein NMR structure determination.
Journal of the American Chemical Society, 131, 7320-6 (Pub Med ID: 19425578)
Times cited: 16
(2009)
Outcome of a workshop on applications of protein models in biomedical research.
Structure, 17, 151-9 (Pub Med ID: 19217386)
Times cited: 24
(2009)
Structural genomics is the largest contributor of novel structural leverage.
Journal of Structural and Functional Genomics, 10, 181-91 (Pub Med ID: 19194785)
Times cited: 27
(2009)
The Polymerase Incomplete Primer Extension (PIPE) method applied to high-throughput cloning and site-directed mutagenesis.
Methods in Molecular Biology, 498, 91-103 (Pub Med ID: 18988020)
Times cited: 11
(2008)
New paradigm for macromolecular crystallography experiments at SSRL: automated crystal screening and remote data collection.
Acta Crystallographica Section D: Biological Crystallography, 64, 1210-21 (Pub Med ID: 19018097)
Times cited: 21
(2008)
Image-based crystal detection: a machine-learning approach.
Acta Crystallographica Section D: Biological Crystallography, 64, 1187-95 (Pub Med ID: 19018095)
Times cited: 6
(2008)
Genome pool strategy for structural coverage of protein families.
Structure, 16, 1659-67 (Pub Med ID: 19000818)
Times cited: 6
(2008)
APSY-NMR with proteins: practical aspects and backbone assignment.
Journal of Biomolecular NMR, 42, 179-95 (Pub Med ID: 18841481)
Times cited: 14
(2008)
Solution NMR structure determination of proteins revisited.
Journal of Biomolecular NMR, 42, 155-8 (Pub Med ID: 18827972)
Times cited: 29
(2008)
Automated amino acid side-chain NMR assignment of proteins using (13)C- and (15)N-resolved 3D [ (1)H, (1)H]-NOESY.
Journal of Biomolecular NMR, 42, 23-33 (Pub Med ID: 18709333)
Times cited: 22
(2008)
Automated sequence-specific protein NMR assignment using the memetic algorithm MATCH.
Journal of Biomolecular NMR, 41, 127-38 (Pub Med ID: 18512031)
Times cited: 24
(2008)
Microscale NMR screening of new detergents for membrane protein structural biology.
Journal of the American Chemical Society, 130, 7357-63 (Pub Med ID: 18479092)
Times cited: 17
(2008)
Protein production and purification.
Nature Methods, 5, 135-46 (Pub Med ID: 18235434)
Times cited: 75
(2008)
Structural genomics: from genes to structures with valuable materials and many questions in between.
Nature Methods, 5, 129-32 (Pub Med ID: 18235432) (PDB: )
Times cited: 14
(2008)
Contributions to the NIH-NIGMS Protein Structure Initiative from the PSI Production Centers
Structure, 16(1), 5-11 (Pub Med ID: 18184575)
Times cited: 28
(2008)
The JCSG MR pipeline: optimized alignments, multiple models and parallel searches.
Acta Crystallographica Section D: Biological Crystallography, 64(Pt 1), 133-40 (Pub Med ID: 18094477)
Times cited: 19
(2008)
Combining the polymerase incomplete primer extension method for cloning and mutagenesis with microscreening to accelerate structural genomics efforts.
Proteins, 71(2), 982-94 (Pub Med ID: 18004753)
Times cited: 69
(2007)
Five years of Increasing Structural Biology Throughput – A Retrospective Analysis.
Structure-based Drug Discovery, H. Jhoti and A. Leach, Eds., Springer (Netherlands)Structure-based Drug Discovery, H. Jhoti and A. Leach, Eds., Springer (Netherlands)
Times cited: no data
(2007)
An X-ray microsource based system for crystal screening and beamline development during synchrotron shutdown periods.
Nuclear Instruments and Methods in Physics Research, Sec. A, 582, 233-235 (Pub Med ID: 19005562)
Times cited: 4
(2007)
The challenge of protein structure determination--lessons from structural genomics.
Protein Science, 16(11), 2472-82 (Pub Med ID: 17962404)
Times cited: 32
(2007)
Size and shape of detergent micelles determined by small-angle X-ray scattering.
Journal of Physical Chemistry B, 111(43), 12427-38 (Pub Med ID: 17924686)
Times cited: 33
(2007)
XtalPred: a web server for prediction of protein crystallizability.
Bioinformatics, 23(24), 3403-5 (Pub Med ID: 17921170)
Times cited: 38
(2007)
Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins.
Structure, 15, 1141-7 (Pub Med ID: 17850753)
Times cited: 23
(2007)
Computational protein function prediction: are we making progress?
Cellular and Molecular Life Science, 64(19-20), 2505-11 (Pub Med ID: 17611711)
Times cited: 23
(2007)
The 2006 automated function prediction meeting.
BMC Bioinformatics, 8 Suppl 4, S1-4 (Pub Med ID: 17570143)
Times cited: 3
(2007)
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.
PLoS Biology, 5(3), e16 (Pub Med ID: 17355171)
Times cited: 265
(2007)
Using an alignment of fragment strings for comparing protein structures.
Bioinformatics, 23(2), e219-24 (Pub Med ID: 17237095)
Times cited: 13
(2006)
Tools for Computational Protein Annotation and Functional Assignment
In Silico technology in drug target identification and validation, D. León and S. Markel, Eds. New York; Marcel Dekker, IncIn Silico technology in drug target identification and validation, D. León and S. Markel, Eds. New York; Marcel Dekker, Inc
Times cited: no data
(2006)
Representing and comparing protein structures as paths in three-dimensional space.
BMC Bioinformatics, 7(2), 460 (Pub Med ID: 17052359)
Times cited: 8
(2006)
Experimental and computational assessment of conditionally essential genes in Escherichia coli.
Journal of Bacteriology, 188(23), 8259-71 (Pub Med ID: 17012394)
Times cited: 60
(2006)
New avenues in protein function prediction.
Protein Science, 15(6), 1527-9 (Pub Med ID: 16731984)
Times cited: 21
(2006)
Expression, purification, and characterization of Thermotoga maritima membrane proteins for structure determination.
Protein Science, 15(5), 961-75 (Pub Med ID: 16597824)
Times cited: 27
(2006)
Automated protein NMR structure determination in crude cell-extract.
Journal of Biomolecular NMR, 34(1), 3-11 (Pub Med ID: 16505959)
Times cited: 6
(2006)
Advances in High-Throughput methods for crystallizing proteins
Biotechnology & Genetic Engineering Reviews, 23, 1-19
Times cited: no data
(2006)
Automated diffraction image analysis and spot searching for high-throughput crystal screening
Journal of Applied Crystallography, 39, 112-9
Times cited: 19
(2005)
Crystallization Optimum Solubility Screening: using crystallization results to identify the optimal buffer for protein crystal formation.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 61(Pt 12), 1035-8 (Pub Med ID: 16511228)
Times cited: 12
(2005)
Towards miniaturization of a structural genomics pipeline using micro-expression and microcoil NMR.
Journal of Structural and Functional Genomics, 6(4), 259-67 (Pub Med ID: 16283429)
Times cited: 22
(2005)
Shotgun crystallization strategy for structural genomics II: crystallization conditions that produce high resolution structures for T. maritima proteins.
Journal of Structural and Functional Genomics, 6(2-3), 209-17 (Pub Med ID: 16211521)
Times cited: 13
(2005)
High-throughput protein production for X-ray crystallography and use of size exclusion chromatography to validate or refute computational biological unit predictions.
Journal of Structural and Functional Genomics, 6(2-3), 135-41 (Pub Med ID: 16211510)
Times cited: 9
(2005)
Methods and results for semi-automated cloning using integrated robotics.
Journal of Structural and Functional Genomics, 6(2-3), 89-94 (Pub Med ID: 16211504)
Times cited: 20
(2005)
Protein production and crystallization at the Joint Center for Structural Genomics
Journal of Structural and Functional Genomics, 6(2-3), 71-9 (Pub Med ID: 16211502)
Times cited: 23
(2005)
FFAS03: a server for profile--profile sequence alignments.
Nucleic Acids Research, 33(Web Server issue), W284-8 (Pub Med ID: 15980471)
Times cited: 174
(2005)
NMR screening and crystal quality of bacterially expressed prokaryotic and eukaryotic proteins in a structural genomics pipeline.
Proceedings of the National Academy of Sciences of the United States of America, 102(6), 1901-5 (Pub Med ID: 15677718)
Times cited: 44
(2005)
Real-space protein-model completion: an inverse-kinematics approach.
Acta Crystallographica Section D: Biological Crystallography, 61(Pt 1), 2-13 (Pub Med ID: 15608370)
Times cited: 21
(2005)
Reduction in diffuse-convective disturbances in nanovolume protein crystallization experiments
Journal of Applied Crystallography, 38, 87-90
Times cited: 11
(2005)
Finding a cold needle in a warm haystack: infrared imaging applied to locating crycocooled crystals in loops
Journal of Applied Crystallography, 38, 69-77
Times cited: 7
(2004)
High Throughput Cloning, Expression and Purification Technologies
Genomics, Proteomics, and Vaccines, G. Grandi, Ed. West Sussex, England; John Wiley & Sons, Ltd.Genomics, Proteomics, and Vaccines, G. Grandi, Ed. West Sussex, England; John Wiley & Sons, Ltd.
Times cited: no data
(2004)
On the use of DXMS to produce more crystallizable proteins: structures of the T. maritima proteins TM0160 and TM1171.
Protein Science, 13(12), 3187-99 (Pub Med ID: 15557262) (PDB: 1VJL)
Times cited: 25
(2004)
Protein biophysical properties that correlate with crystallization success in Thermotoga maritima: maximum clustering strategy for structural genomics.
Journal of Molecular Biology, 344(4), 977-91 (Pub Med ID: 15544807)
Times cited: 50
(2004)
Scalable high-throughput micro-expression device for recombinant proteins.
Biotechniques, 37(3), 364 (Pub Med ID: 15470889)
Times cited: 25
(2004)
The site-specific incorporation of p-iodo-L-phenylalanine into proteins for structure determination.
Nature Biotechnology, 22, 1297-301 (Pub Med ID: 15378068)
Times cited: 49
(2004)
Crystallization data mining in structural genomics: using positive and negative results to optimize protein crystallization screens.
Methods, 34(3), 373-89 (Pub Med ID: 15325655)
Times cited: 36
(2004)
A scaleable and integrated crystallization pipeline applied to mining the Thermotoga maritima proteome.
Journal of Structural and Functional Genomics, 5(1-2), 133-46 (Pub Med ID: 15263852)
Times cited: 19
(2004)
NMR for structural proteomics of Thermotoga maritima: screening and structure determination.
Journal of Structural and Functional Genomics, 5(3), 205-15 (Pub Med ID: 15263836)
Times cited: 25
(2004)
Database searching by flexible protein structure alignment.
Protein Science, 13(7), 1841-50 (Pub Med ID: 15215527)
Times cited: 21
(2004)
The importance of alignment accuracy for molecular replacement.
Acta Crystallographica Section D: Biological Crystallography, 60(Pt 7), 1229-36 (Pub Med ID: 15213384)
Times cited: 79
(2004)
PCR primer selection tool optimized for high-throughput proteomics and structural genomics.
Biotechniques, 36(6), 1040-2 (Pub Med ID: 15211755)
Times cited: 1
(2004)
The interplay of fold recognition and experimental structure determination in structural genomics.
Current Opinion in Structural Biology, 14(3), 307-12 (Pub Med ID: 15193310)
Times cited: 29
(2004)
Automated sample mounting and alignment system for biological crystallography at a synchrotron source.
Structure, 12(4), 537-45 (Pub Med ID: 15062077)
Times cited: 51
(2004)
Long live structural biology.
Nature Structural & Molecular Biology, 11(4), 293-5 (Pub Med ID: 15048098)
Times cited: 17
(2004)
Comparative analysis of protein domain organization.
Genome Research, 14(3), 343-53 (Pub Med ID: 14993202)
Times cited: 46
(2004)
The status of structural genomics defined through the analysis of current targets and structures.
Pac Symp Biocomput., 9, 375-86 (Pub Med ID: 14992518)
Times cited: 6
(2004)
Rapid refinement of crystallographic protein construct definition employing enhanced hydrogen/deuterium exchange MS.
Proceedings of the National Academy of Sciences of the United States of America, 101(3), 751-6 (Pub Med ID: 14715906)
Times cited: 63
(2004)
Automatic classification of protein crystallization images using a curve tracking algorithm
Journal of Applied Crystallography, 37, 279-287
Times cited: 28
(2003)
The cost and value of three-dimensional protein structure
Drug Discovery World, 4, 35-48
Times cited: no data
(2003)
Robotics for automated crystal formation and analysis.
Methods in Enzymology, 368(Pt 6), 45-76 (Pub Med ID: 14674268)
Times cited: 14
(2003)
Flexible structure alignment by chaining aligned fragment pairs allowing twists.
Bioinformatics, 19 Suppl 2(20), ii246-55 (Pub Med ID: 14534198)
Times cited: 127
(2003)
Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family.
Protein Science, 12(9), 1872-81 (Pub Med ID: 12930987)
Times cited: 22
(2003)
Shotgun crystallization strategy for structural genomics: an optimized two-tiered crystallization screen against the Thermotoga maritima proteome.
Acta Crystallographica Section D: Biological Crystallography, 59(Pt 6), 1028-37 (Pub Med ID: 12777766)
Times cited: 67
(2003)
A fully integrated protein crystallization platform for small-molecule drug discovery.
Journal of Structural Biology, 142(1), 207-17 (Pub Med ID: 12718932)
Times cited: 48
(2003)
Challenges of structural genomics: bioinformatics
Biosilico, 1, 36-41
Times cited: no data
(2002)
Bioinformatics and High-throughput Protein Production for Structural Genomics
Gene Cloning and ex-pression Technologies, M.P. Weiner and Q. Lu, Eds. Westborough, MA; Biotechniques PressGene Cloning and ex-pression Technologies, M.P. Weiner and Q. Lu, Eds. Westborough, MA; Biotechniques Press
Times cited: no data
(2002)
Collaboratory for Macromolecular Crystallography at SSRL
Proceedings in Network LearningProceedings in Network Learning
Times cited: no data
(2002)
The genesis of high-throughput structure-based drug discovery using protein crystallography.
Current Opinion in Chemical Biology, 6(5), 704-10 (Pub Med ID: 12413557)
Times cited: 72
(2002)
Blu-Ice and the Distributed Control System: software for data acquisition and instrument control at macromolecular crystallography beamlines.
Journal of Synchrotron Radiation, 9(Pt 6), 401-6 (Pub Med ID: 12409628)
Times cited: 214
(2002)
Computational analysis of crystallization trials.
Acta Crystallographica Section D: Biological Crystallography, 58(Pt 11), 1915-23 (Pub Med ID: 12393922)
Times cited: 46
(2002)
Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline.
Proceedings of the National Academy of Sciences of the United States of America, 99(18), 11664-9 (Pub Med ID: 12193646)
Times cited: 284
(2002)
Gene expression response to misfolded protein as a screen for soluble recombinant protein.
Protein Engineering, Design and Selection, 15(2), 153-60 (Pub Med ID: 11917152)
Times cited: 56
(2002)
An approach to rapid protein crystallization using nanodroplets
Journal of Applied Crystallography, 35, 278-281
Times cited: 170
(2002)
An automated system to mount cryo-cooled protein crystals on a synchtrotron beam line, using compact sample cassettes and a small-scale robot
Journal of Applied Crystallography, 35, 720-6
Times cited: 125
(2001)
Global efforts in structural genomics.
Science, 294(5540), 89-92 (Pub Med ID: 11588249)
Times cited: 131
(2001)
Tech.Sight. Industrializing structural biology.
Science, 293(5529), 519-20 (Pub Med ID: 11463918)
Times cited: 27
(2001)
High-throughput proteomics: protein expression and purification in the postgenomic world.
Protein Expression and Purification, 22(2), 159-64 (Pub Med ID: 11437590)
Times cited: 97
(2001)
High-throughput X-ray crystallography for structure-based drug design
Drug Discovery Today, 6, S113-8
Times cited: 16
(2000)
Combining structural genomics and enzymology: completing the picture in metabolic pathways and enzyme active sites.
Current Opinion in Structural Biology, 10(6), 719-30 (Pub Med ID: 11114510)
Times cited: 31
(2000)
Automation of X-ray crystallography.
Nature Structural & Molecular Biology, 7 Suppl(20), 973-7 (Pub Med ID: 11104004)
Times cited: 116
(2000)
High-throughput protein crystallization.
Current Opinion in Structural Biology, 10(5), 558-63 (Pub Med ID: 11042454)
Times cited: 132
(2000)
Design of high-throughput methods of protein production for structural biology.
Structure, 8(9), R177-85 (Pub Med ID: 10986469)
Times cited: 110
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Average number of citations per publication (methodological): 35.6