JCSG Publications
Structural Publications
Methodological and Other Publications
Average number of citations per publication (structural): 9.0
Average number of citations per publication (methodological): 40.8
Methodological and Other Publications
Structural Publications
- Allosteric control in a metalloprotein dramatically alters function.
Proceedings of the National Academy of Sciences of the United States of America (2013) , 110, 948-53
(Pub Med ID: 23271805)
PDB ID(s): 4EZF 4F28 4F1E 4F2C
Times cited: no data - A broad specificity nucleoside kinase from Thermoplasma acidophilum.
Proteins (2013) , 81, 568-82
(Pub Med ID: 23161756)
PDB ID(s): 3BF5
Times cited: no data - Folate binding site of flavin-dependent thymidylate synthase.
Proceedings of the National Academy of Sciences of the United States of America (2012) , 109, 15722-7
(Pub Med ID: 23019356)
PDB ID(s): 4GT9 4GTA 4GTB 4GTC 4GTD 4GTE 4GTF 4GTL
Times cited: 1
- Structure of a Novel Winged-Helix Like Domain from Human NFRKB Protein.
PLoS ONE (2012) , 7, e43761
(Pub Med ID: 22984442)
PDB ID(s): 3U21
Times cited: 0
- Structure of hepatitis C virus envelope glycoprotein E2 antigenic site 412 to 423 in complex with antibody AP33.
Journal of Virology (2012) , 86, 13085-8
(Pub Med ID: 22973046)
PDB ID(s): 4G6A
Times cited: no data - Structure of an MmyB-like regulator from C. aurantiacus, member of a new transcription factor family linked to antibiotic metabolism in actinomycetes.
PLoS ONE (2012) , 7, e41359
(Pub Med ID: 22844465)
PDB ID(s): 3PXP
Times cited: 0
- Application of DEN refinement and automated model building to a difficult case of molecular-replacement phasing: the structure of a putative succinyl-diaminopimelate desuccinylase from Corynebacterium glutamicum.
Acta Crystallographica Section D: Biological Crystallography (2012) , 68, 391-403
(Pub Med ID: 22505259)
PDB ID(s): 3TX8
Times cited: 5
- The Structure of Mlc Titration Factor A (MtfA/YeeI) Reveals a Prototypical Zinc Metallopeptidase Related to Anthrax Lethal Factor.
Journal of Bacteriology (2012) , 194, 2987-99
(Pub Med ID: 22467785)
PDB ID(s): 3DL1 3KHI
Times cited: 0
- Functional and structural characterization of a thermostable acetyl esterase from Thermotoga maritima.
Proteins (2012) , 80, 1545-59
(Pub Med ID: 22411095)
PDB ID(s): 1VLQ 3M81 3M82 3M83
Times cited: 3
- Trapping of an intermediate in the reaction catalyzed by flavin-dependent thymidylate synthase.
Journal of the American Chemical Society (2012) , 134, 4442-8
(Pub Med ID: 22295882)
Times cited: no data - The product of tadZ, a new member of the parA/minD superfamily, localizes to a pole in Aggregatibacter actinomycetemcomitans.
Molecular Microbiology (2012) , 83, 694-711
(Pub Med ID: 22239271)
Times cited: no data - Structure of the pilus assembly protein TadZ from Eubacterium rectale: implications for polar localization.
Molecular Microbiology (2012) , 83, 712-727
(Pub Med ID: 22211578)
PDB ID(s): 3FKQ
Times cited: 1
- The FGGY Carbohydrate Kinase Family: Insights into the Evolution of Functional Specificities.
PLoS Computational Biology (2011) , 7, e1002318
(Pub Med ID: 22215998)
Times cited: no data - Structural Analysis of Papain-Like NlpC/P60 Superfamily Enzymes with a Circularly Permuted Topology Reveals Potential Lipid Binding Sites.
PLoS ONE (2011) , 6, e22013
(Pub Med ID: 21799766)
Times cited: 3
- Structural and sequence analysis of imelysin-like proteins implicated in bacterial iron uptake.
PLoS ONE (2011) , 6, e21875
(Pub Med ID: 21799754)
Times cited: 2
- Mutation of the His ligand in mitoNEET stabilizes the 2Fe-2S cluster despite conformational heterogeneity in the ligand environment.
Acta Crystallographica Section D: Biological Crystallography (2011) , 67, 516-23
(Pub Med ID: 21636891)
PDB ID(s): 3LPQ
Times cited: 6
- Crystal structure of a metal-dependent phosphoesterase (YP_910028.1) from Bifidobacterium adolescentis: Computational prediction and experimental validation of phosphoesterase activity.
Proteins (2011) , 79, 2146-60
(Pub Med ID: 21538547)
PDB ID(s): 3E0F 3O0F
Times cited: 2
- NMR structure of the Bordetella bronchiseptica protein NP_888769.1 establishes a new phage-related protein family PF13554.
Protein Science (2011) , 20, 1137-44
(Pub Med ID: 21520320)
Times cited: no data - Structure and function of the first full-length murein Peptide ligase (mpl) cell wall recycling protein.
PLoS ONE (2011) , 6, e17624
(Pub Med ID: 21445265)
PDB ID(s): 3HN7
Times cited: 1
- Crystal Structure of the Human N-Myc Downstream-regulated Gene 2 Protein Provides Insight into Its Role as a Tumor Suppressor.
Journal of Biological Chemistry (2011) , 286, 12450-60
(Pub Med ID: 21247902)
PDB ID(s): 2XMQ 2XMR 2XMS 2QMQ
Times cited: 12
- Comparison of NMR and crystal structures highlights conformational isomerism in protein active sites.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1393-405
(Pub Med ID: 20944236)
PDB ID(s): 2KA5 2KL2
Times cited: 6
- Comparison of NMR and crystal structures for the proteins TM1112 and TM1367.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1381-92
(Pub Med ID: 20944235)
PDB ID(s): 2K9Z 2KA0
Times cited: 6
- NMR structure of the protein NP_247299.1: comparison with the crystal structure.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1367-80
(Pub Med ID: 20944234)
PDB ID(s): 2KLA
Times cited: 6
- Structure of the γ-D-glutamyl-L-diamino acid endopeptidase YkfC from Bacillus cereus in complex with L-Ala-γ-D-Glu: insights into substrate recognition by NlpC/P60 cysteine peptidases.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1354-64
(Pub Med ID: 20944232)
PDB ID(s): 3H41
Times cited: 14
- Conformational changes associated with the binding of zinc acetate at the putative active site of XcTcmJ, a cupin from Xanthomonas campestris pv. campestris.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1347-53
(Pub Med ID: 20944231)
PDB ID(s): 3H50
Times cited: 3
- Structures of three members of Pfam PF02663 (FmdE) implicated in microbial methanogenesis reveal a conserved α+β core domain and an auxiliary C-terminal treble-clef zinc finger.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1335-46
(Pub Med ID: 20944230)
PDB ID(s): 2GLZ 2GVI 3D00
Times cited: 3
- Structure of a tryptophanyl-tRNA synthetase containing an iron-sulfur cluster.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1326-34
(Pub Med ID: 20944229)
PDB ID(s): 2G36
Times cited: 3
- The structure of Haemophilus influenzaeprephenate dehydrogenase suggests unique features of bifunctional TyrA enzymes.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1317-25
(Pub Med ID: 20944228)
PDB ID(s): 2PV7
Times cited: 1
- Ligands in crystal structures that aid in functional characterization.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1306-8
(Pub Med ID: 20944226)
Times cited: 2
- Structure of a membrane-attack complex/perforin (MACPF) family protein from the human gut symbiont Bacteroides thetaiotaomicron.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1297-305
(Pub Med ID: 20944225)
PDB ID(s): 3KK7
Times cited: 7
- Structure of Bacteroides thetaiotaomicron BT2081 at 2.05 Å resolution: the first structural representative of a new protein family that may play a role in carbohydrate metabolism.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1287-96
(Pub Med ID: 20944224)
PDB ID(s): 3HBZ
Times cited: 0
- A conserved fold for fimbrial components revealed by the crystal structure of a putative fimbrial assembly protein (BT1062) from Bacteroides thetaiotaomicron at 2.2 Å resolution.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1281-6
(Pub Med ID: 20944223)
PDB ID(s): 3GF8
Times cited: 2
- Structure of BT_3984, a member of the SusD/RagB family of nutrient-binding molecules.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1274-80
(Pub Med ID: 20944222)
PDB ID(s): 3CGH
Times cited: 1
- The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1265-73
(Pub Med ID: 20944221)
PDB ID(s): 3DUE
Times cited: 2
- The structure of KPN03535 (gi|152972051), a novel putative lipoprotein from Klebsiella pneumoniae, reveals an OB-fold.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1254-60
(Pub Med ID: 20944219)
PDB ID(s): 3F1Z
Times cited: 1
- Open and closed conformations of two SpoIIAA-like proteins (YP_749275.1 and YP_001095227.1) provide insights into membrane association and ligand binding.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1245-53
(Pub Med ID: 20944218)
PDB ID(s): 2OOK 2Q3L
Times cited: 4
- Structure of a putative NTP pyrophosphohydrolase: YP_001813558.1 from Exiguobacterium sibiricum 255-15.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1237-44
(Pub Med ID: 20944217)
PDB ID(s): 3NL9
Times cited: 2
- Structure of an essential bacterial protein YeaZ (TM0874) from Thermotoga maritima at 2.5 Å resolution.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1230-6
(Pub Med ID: 20944216)
PDB ID(s): 2A6A
Times cited: 5
- Structures of the first representatives of Pfam family PF06938 (DUF1285) reveal a new fold with repeated structural motifs and possible involvement in signal transduction.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1218-25
(Pub Med ID: 20944214)
PDB ID(s): 2RE3 2RA9
Times cited: 1
- The structure of the first representative of Pfam family PF06475 reveals a new fold with possible involvement in glycolipid metabolism.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1211-7
(Pub Med ID: 20944213)
PDB ID(s): 2H1T
Times cited: 2
- Structure of LP2179, the first representative of Pfam family PF08866, suggests a new fold with a role in amino-acid metabolism.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1205-10
(Pub Med ID: 20944212)
PDB ID(s): 2IAY
Times cited: 1
- The structure of Jann_2411 (DUF1470) from Jannaschia sp. at 1.45 Å resolution reveals a new fold (the ABATE domain) and suggests its possible role as a transcription regulator.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1198-204
(Pub Med ID: 20944211)
PDB ID(s): 3H0N
Times cited: 4
- Structures of the first representatives of Pfam family PF06684 (DUF1185) reveal a novel variant of the Bacillus chorismate mutase fold and suggest a role in amino-acid metabolism.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1182-9
(Pub Med ID: 20944209)
PDB ID(s): 3BYQ 2QTP
Times cited: 0
- The structure of the first representative of Pfam family PF09836 reveals a two-domain organization and suggests involvement in transcriptional regulation.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1174-81
(Pub Med ID: 20944208)
PDB ID(s): 3DEE
Times cited: 1
- Structure of the first representative of Pfam family PF04016 (DUF364) reveals enolase and Rossmann-like folds that combine to form a unique active site with a possible role in heavy-metal chelation.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1167-73
(Pub Med ID: 20944207)
PDB ID(s): 3L5O
Times cited: 0
- The structure of SSO2064, the first representative of Pfam family PF01796, reveals a novel two-domain zinc-ribbon OB-fold architecture with a potential acyl-CoA-binding role.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1160-6
(Pub Med ID: 20944206)
PDB ID(s): 3IRB
Times cited: 2
- Structure of the first representative of Pfam family PF09410 (DUF2006) reveals a structural signature of the calycin superfamily that suggests a role in lipid metabolism.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1153-9
(Pub Med ID: 20944205)
PDB ID(s): 2ICH
Times cited: 3
- Insights into substrate specificity of geranylgeranyl reductases revealed by the structure of digeranylgeranylglycerophospholipid reductase, an essential enzyme in the biosynthesis of archaeal membrane lipids.
Journal of Molecular Biology (2010) , 404, 403-17
(Pub Med ID: 20869368)
PDB ID(s): 3OZ2
Times cited: 4
- The crystal structure of a bacterial Sufu-like protein defines a novel group of bacterial proteins that are similar to the N-terminal domain of human Sufu.
Protein Science (2010) , 19, 2131-40
(Pub Med ID: 20836087)
PDB ID(s): 3K5J
Times cited: 2
- NMR Structure of the SARS-CoV Nonstructural Protein 7 in Solution at pH 6.5.
Journal of Molecular Biology (2010) , 402, 619-28
(Pub Med ID: 20709084)
PDB ID(s): 2KYS
Times cited: 4
- Expansion of the protein repertoire in newly explored environments: human gut microbiome specific protein families.
PLoS Computational Biology (2010) , 6, e1000798
(Pub Med ID: 20532204)
Times cited: 15
- SARS coronavirus unique domain: three-domain molecular architecture in solution and RNA binding.
Journal of Molecular Biology (2010) , 400, 724-42
(Pub Med ID: 20493876)
PDB ID(s): 2KAF 2KQV 2KQW
Times cited: 0
- TM0486 from the hyperthermophilic anaerobe Thermotoga maritima is a thiamin-binding protein involved in response of the cell to oxidative conditions.
Journal of Molecular Biology (2010) , 400, 463-76
(Pub Med ID: 20471400)
PDB ID(s): 1VK8
Times cited: 2
- Structure of a virulence regulatory factor CvfB reveals a novel winged helix RNA binding module.
Structure (2010) , 18, 537-47
(Pub Med ID: 20399190)
PDB ID(s): 3GO5
Times cited: 7
- Crystal Structure of the First Eubacterial Mre11 Nuclease Reveals Novel Features that May Discriminate Substrates During DNA Repair.
Journal of Molecular Biology (2010) , 397, 647-663
(Pub Med ID: 20122942)
PDB ID(s): 2Q8U
Times cited: 9
- Genomics, evolution, and crystal structure of a new family of bacterial spore kinases.
Proteins (2010) , 78, 1470-82
(Pub Med ID: 20077512)
PDB ID(s): 2Q83
Times cited: 3
- Bacterial Pleckstrin Homology Domains: A Prokaryotic Origin for the PH Domain.
Journal of Molecular Biology (2010) , 396, 31-46
(Pub Med ID: 19913036)
PDB ID(s): 3DCX 3HSA 3B77
Times cited: 4
- Nuclear magnetic resonance structure of the nucleic acid-binding domain of severe acute respiratory syndrome coronavirus nonstructural protein 3.
Journal of Virology (2009) , 83, 12998-3008
(Pub Med ID: 19828617)
PDB ID(s): 2K87
Times cited: 4
- Exploration of uncharted regions of the protein universe.
PLoS Biology (2009) , 7, e1000205
(Pub Med ID: 19787035)
Times cited: 32
- Three-dimensional structural view of the central metabolic network of Thermotoga maritima.
Science (2009) , 325, 1544-9
(Pub Med ID: 19762644)
Times cited: 54
- Structural and functional characterizations of SsgB, a conserved activator of developmental cell division in morphologically complex actinomycetes.
Journal of Biological Chemistry (2009) , 284, 25268-79
(Pub Med ID: 19567872)
PDB ID(s): 3CM1
Times cited: 9
- Oxidase activity of a flavin-dependent thymidylate synthase.
FEBS Journal (2009) , 276, 2801-10
(Pub Med ID: 19459936)
PDB ID(s): 1024 1025 1026 1027 1028 102B 1029 102A 1KQ4
Times cited: 6
- Crystal structure of histidine phosphotransfer protein ShpA, an essential regulator of stalk biogenesis in Caulobacter crescentus.
Journal of Molecular Biology (2009) , 390, 686-98
(Pub Med ID: 19450606)
PDB ID(s): 2OOC
Times cited: 4
- An unusual mechanism of thymidylate biosynthesis in organisms containing the thyX gene.
Nature (2009) , 458, 919-23
(Pub Med ID: 19370033)
PDB ID(s): 1O24 1O25 1O26 1O27 1O28 1O2B 1029 1O2A 1KQ4
Times cited: 23
- Structure of Thermotoga maritima TM0439: implications for the mechanism of bacterial GntR transcription regulators with Zn2+-binding FCD domains.
Acta Crystallographica Section D: Biological Crystallography (2009) , 65, 356-65
(Pub Med ID: 19307717)
PDB ID(s): 3FMS
Times cited: 2
- Structural Basis of Murein Peptide Specificity of a gamma-D-Glutamyl-L-Diamino Acid Endopeptidase.
Structure (2009) , 17, 303-313
(Pub Med ID: 19217401)
PDB ID(s): 2HBW 2FG0 2EVR
Times cited: 18
- The Thermotoga maritima Trk potassium transporter--from frameshift to function.
Journal of Bacteriology (2009) , 191, 2276-84
(Pub Med ID: 19168617)
PDB ID(s): 2G1U
Times cited: 2
- Crystal structure of the Fic (Filamentation induced by cAMP) family protein SO4266 (gi|24375750) from Shewanella oneidensis MR-1 at 1.6 A resolution.
Proteins (2009) , 75, 264-71
(Pub Med ID: 19127588)
PDB ID(s): 3EQX
Times cited: 8
- Crystal structure of a novel archaeal AAA+ ATPase SSO1545 from Sulfolobus solfataricus.
Proteins (2009) , 74, 1041-9
(Pub Med ID: 19089981)
PDB ID(s): 2FNA
Times cited: 2
- Nuclear magnetic resonance structure shows that the severe acute respiratory syndrome coronavirus-unique domain contains a macrodomain fold.
Journal of Virology (2009) , 83, 1823-36
(Pub Med ID: 19052085)
PDB ID(s): 2RNK 2JZD 2JZF 2JZE
Times cited: 11
- A structural basis for the regulatory inactivation of DnaA.
Journal of Molecular Biology (2009) , 385, 368-80
(Pub Med ID: 19000695)
PDB ID(s): 3BOS
Times cited: 9
- NMR assignment of the nonstructural protein nsp3(1066-1181) from SARS-CoV.
Biomolecular NMR Assignments (2008) , 2, 135-8
(Pub Med ID: 19636888)
PDB ID(s): 2K87
Times cited: 2
- Crystal structure of a novel Sm-like protein of putative cyanophage origin at 2.60 A resolution.
Proteins (2008) , 75, 296-307
(Pub Med ID: 19173316)
PDB ID(s): 3BY7
Times cited: no data - Structure and ligand binding of the soluble domain of a Thermotoga maritima membrane protein of unknown function TM1634.
Protein Science (2008) , 17(5), 869-77
(Pub Med ID: 18369189)
Times cited: 3
- Proteomics analysis unravels the functional repertoire of coronavirus nonstructural protein 3.
Journal of Virology (2008) , 82, 5279-94
(Pub Med ID: 18367524)
Times cited: 32
- Crystal structures of MW1337R and lin2004: representatives of a novel protein family that adopt a four-helical bundle fold.
Proteins (2008) , 71(3), 1589-96
(Pub Med ID: 18324683)
PDB ID(s): 2ETS 2HUJ
Times cited: 0
- Crystal structure of an ADP-ribosylated protein with a cytidine deaminase-like fold, but unknown function (TM1506), from Thermotoga maritima at 2.70 A resolution.
Proteins (2008) , 71(3), 1546-52
(Pub Med ID: 18275082)
PDB ID(s): 1VK9
Times cited: 3
- Crystal structure of AICAR transformylase IMP cyclohydrolase (TM1249) from Thermotoga maritima at 1.88 A resolution.
Proteins (2008) , 71(2), 1042-9
(Pub Med ID: 18260100)
PDB ID(s): 1ZCZ
Times cited: 3
- Crystal structure of 2-keto-3-deoxygluconate kinase (TM0067) from Thermotoga maritima at 2.05 A resolution.
Proteins (2008) , 70(2), 603-8
(Pub Med ID: 18004772)
PDB ID(s): 2AFB
Times cited: 2
- NMR assignment of the domain 513-651 from the SARS-CoV nonstructural protein nsp3.
Biomolecular NMR Assignments (2007) , 1, 191-4
(Pub Med ID: 19636862)
PDB ID(s): 2RNK 2JZF
Times cited: 3
- Nuclear magnetic resonance structure of the N-terminal domain of nonstructural protein 3 from the severe acute respiratory syndrome coronavirus.
Journal of Virology (2007) , 81(21), 12049-60
(Pub Med ID: 17728234)
PDB ID(s): 2GRI 2IDY
Times cited: 17
- Reactivation of methionine synthase from Thermotoga maritima (TM0268) requires the downstream gene product TM0269.
Protein Science (2007) , 16(8), 1588-95
(Pub Med ID: 17656578)
Times cited: 3
- Crystal structure of MtnX phosphatase from Bacillus subtilis at 2.0 A resolution provides a structural basis for bipartite phosphomonoester hydrolysis of 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate.
Proteins (2007) , 69(2), 433-9
(Pub Med ID: 17654724)
PDB ID(s): 2FEA
Times cited: 2
- Identification and structural characterization of heme binding in a novel dye-decolorizing peroxidase, TyrA.
Proteins (2007) , 69(2), 234-43
(Pub Med ID: 17654547)
PDB ID(s): 2IIZ
Times cited: 28
- Crystal structures of two novel dye-decolorizing peroxidases reveal a beta-barrel fold with a conserved heme-binding motif.
Proteins (2007) , 69(2), 223-33
(Pub Med ID: 17654545)
PDB ID(s): 2GVK 2HAG
Times cited: 25
- Crystal structure of NMA1982 from Neisseria meningitidis at 1.5 A resolution provides a structural scaffold for nonclassical, eukaryotic-like phosphatases.
Proteins (2007) , 69(2), 415-21
(Pub Med ID: 17636569)
PDB ID(s): 2F46
Times cited: 4
- The relationships between oxidase and synthase activities of flavin dependent thymidylate synthase (FDTS).
Chemical Communications (2007) , 53, 2861-3
(Pub Med ID: 17609801)
Times cited: 6
- Crystal structure of homoserine O-succinyltransferase from Bacillus cereus at 2.4 A resolution.
Proteins (2007) , 68(4), 999-1005
(Pub Med ID: 17546672)
PDB ID(s): 2GHR
Times cited: 6
- Crystal structure of TM1030 from Thermotoga maritima at 2.3 A resolution reveals molecular details of its transcription repressor function.
Proteins (2007) , 68(1), 418-24
(Pub Med ID: 17444523)
PDB ID(s): 1ZKG
Times cited: 3
- Crystal structure of a transcription regulator (TM1602) from Thermotoga maritima at 2.3 A resolution.
Proteins (2007) , 67(1), 247-52
(Pub Med ID: 17256761)
PDB ID(s): 1J5Y
Times cited: 3
- Novel beta-barrel fold in the nuclear magnetic resonance structure of the replicase nonstructural protein 1 from the severe acute respiratory syndrome coronavirus.
Journal of Virology (2007) , 81(7), 3151-61
(Pub Med ID: 17202208)
PDB ID(s): 2HSX
Times cited: 26
- Comparative structural analysis of a novel glutathioneS-transferase (ATU5508) from Agrobacterium tumefaciens at 2.0 A resolution.
Proteins (2006) , 65(3), 527-37
(Pub Med ID: 16988933)
PDB ID(s): 2FNO
Times cited: 5
- Crystal structure of an ORFan protein (TM1622) from Thermotoga maritima at 1.75 A resolution reveals a fold similar to the Ran-binding protein Mog1p.
Proteins (2006) , 65(3), 777-82
(Pub Med ID: 16948158)
PDB ID(s): 1VR8
Times cited: 5
- Crystal structure of 2-phosphosulfolactate phosphatase (ComB) from Clostridium acetobutylicum at 2.6 A resolution reveals a new fold with a novel active site.
Proteins (2006) , 65(3), 771-6
(Pub Med ID: 16927339)
PDB ID(s): 1VR0
Times cited: 2
- Crystal structure of phosphoribosylformyl-glycinamidine synthase II, PurS subunit (TM1244) from Thermotoga maritima at 1.90 A resolution.
Proteins (2006) , 65(1), 249-54
(Pub Med ID: 16865708)
PDB ID(s): 1VQ3
Times cited: 3
- Crystal structure of a glycerate kinase (TM1585) from Thermotoga maritima at 2.70 A resolution reveals a new fold.
Proteins (2006) , 65(1), 243-8
(Pub Med ID: 16865707)
PDB ID(s): 2B8N
Times cited: 5
- Crystal structure of a divalent metal ion transporter CorA at 2.9 angstrom resolution.
Science (2006) , 313(5785), 354-7
(Pub Med ID: 16857941)
Times cited: 76
- Solution structures of the putative anti-sigma-factor antagonist TM1442 from Thermotoga maritima in the free and phosphorylated states.
Magnetic Resonance in Chemistry (2006) , 44 Spec No(16), S61-70
(Pub Med ID: 16826544)
PDB ID(s): 1SBO 1T6R
Times cited: 5
- NMR assignment of the SARS-CoV protein nsp1.
Journal of Biomolecular NMR (2006) , 36 Suppl 1(4), 46
(Pub Med ID: 16821128)
Times cited: 7
- NMR assignment of the protein nsp3a from SARS-CoV.
Journal of Biomolecular NMR (2006) , 36 Suppl 1(1), 45
(Pub Med ID: 16799860)
Times cited: 2
- Crystal structure of acireductone dioxygenase (ARD) from Mus musculus at 2.06 angstrom resolution.
Proteins (2006) , 64(3), 808-13
(Pub Med ID: 16783794)
PDB ID(s): 1VR3
Times cited: 12
- Crystal structure of the ApbE protein (TM1553) from Thermotoga maritima at 1.58 A resolution.
Proteins (2006) , 64(4), 1083-90
(Pub Med ID: 16779835)
PDB ID(s): 1VRM
Times cited: 4
- A lag-phase in the reduction of flavin dependent thymidylate synthase (FDTS) revealed a mechanistic missing link.
Chemical Communications (2006) , 21(3)(16), 1781-3
(Pub Med ID: 16609803)
Times cited: 9
- Solution structure of Asl1650, an acyl carrier protein from Anabaena sp. PCC 7120 with a variant phosphopantetheinylation-site sequence.
Protein Science (2006) , 15(5), 1030-41
(Pub Med ID: 16597827)
Times cited: 10
- Crystal structure of phosphoribosylformylglycinamidine synthase II (smPurL) from Thermotoga maritima at 2.15 A resolution.
Proteins (2006) , 63(4), 1106-11
(Pub Med ID: 16544324)
PDB ID(s): 1VK3
Times cited: 6
- Crystal structure of TM1367 from Thermotoga maritima at 1.90 A resolution reveals an atypical member of the cyclophilin (peptidylprolyl isomerase) fold.
Proteins (2006) , 63(4), 1112-8
(Pub Med ID: 16544291)
PDB ID(s): 1ZX8
Times cited: 5
- Crystal structure of a single-stranded DNA-binding protein (TM0604) from Thermotoga maritima at 2.60 A resolution.
Proteins (2006) , 63(1), 256-60
(Pub Med ID: 16435371)
PDB ID(s): 1Z9F
Times cited: 12
- Contribution of electrostatic interactions, compactness and quaternary structure to protein thermostability: lessons from structural genomics of Thermotoga maritima.
Journal of Molecular Biology (2006) , 356(2), 547-57
(Pub Med ID: 16375925)
Times cited: 69
- Crystal structure of virulence factor CJ0248 from Campylobacter jejuni at 2.25 A resolution reveals a new fold.
Proteins (2006) , 62(1), 292-6
(Pub Med ID: 16287129)
PDB ID(s): 1VQR
Times cited: 2
- Crystal structure of a conserved hypothetical protein (gi: 13879369) from Mouse at 1.90 A resolution reveals a new fold.
Proteins (2005) , 61(4), 1132-6
(Pub Med ID: 16224779)
PDB ID(s): 1VKB
Times cited: 7
- NMR structure of the conserved hypothetical protein TM0487 from Thermotoga maritima: implications for 216 homologous DUF59 proteins.
Protein Science (2005) , 14(11), 2880-6
(Pub Med ID: 16199668)
Times cited: 4
- Structural genomics of the severe acute respiratory syndrome coronavirus: nuclear magnetic resonance structure of the protein nsP7.
Journal of Virology (2005) , 79(20), 12905-13
(Pub Med ID: 16188992)
Times cited: 26
- Crystal structure of Hsp33 chaperone (TM1394) from Thermotoga maritima at 2.20 A resolution.
Proteins (2005) , 61(3), 669-73
(Pub Med ID: 16167343)
PDB ID(s): 1VQ0
Times cited: 7
- The structure of a eukaryotic nicotinic acid phosphoribosyltransferase reveals structural heterogeneity among type II PRTases.
Structure (2005) , 13(9), 1385-96
(Pub Med ID: 16154095)
PDB ID(s): 1VLP
Times cited: 20
- Crystal structure of a putative modulator of DNA gyrase (pmbA) from Thermotoga maritima at 1.95 A resolution reveals a new fold.
Proteins (2005) , 61(2), 444-8
(Pub Med ID: 16104019)
PDB ID(s): 1VL4
Times cited: 2
- Crystal structure of the global regulatory protein CsrA from Pseudomonas putida at 2.05 A resolution reveals a new fold.
Proteins (2005) , 61(2), 449-53
(Pub Med ID: 16104018)
PDB ID(s): 1VPZ
Times cited: 17
- Crystal structure of an Apo mRNA decapping enzyme (DcpS) from Mouse at 1.83 A resolution.
Proteins (2005) , 60(4), 797-802
(Pub Med ID: 16001405)
PDB ID(s): 1VLR
Times cited: 5
- Structural genomics of thermotoga maritima proteins shows that contact order is a major determinant of protein thermostability.
Structure (2005) , 13(6), 857-60
(Pub Med ID: 15939017)
Times cited: 32
- NMR structure determination of the conserved hypothetical protein TM1816 from Thermotoga maritima.
Proteins (2005) , 60(3), 552-7
(Pub Med ID: 15937903)
PDB ID(s): 1T3V
Times cited: 5
- Crystal structure of S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA) from Thermotoga maritima at 2.0 A resolution reveals a new fold.
Proteins (2005) , 59(4), 869-74
(Pub Med ID: 15822125)
PDB ID(s): 1VKY
Times cited: 8
- Crystal structure of an indigoidine synthase A (IndA)-like protein (TM1464) from Thermotoga maritima at 1.90 A resolution reveals a new fold.
Proteins (2005) , 59(4), 864-8
(Pub Med ID: 15822122)
PDB ID(s): 1VKM
Times cited: 9
- NMR structure of the conserved hypothetical protein TM0979 from Thermotoga maritima.
Proteins (2005) , 59(2), 387-90
(Pub Med ID: 15723348)
Times cited: 4
- The structure of the neurotoxin-associated protein HA33/A from Clostridium botulinum suggests a reoccurring beta-trefoil fold in the progenitor toxin complex.
Journal of Molecular Biology (2005) , 346, 1083-93
(Pub Med ID: 15701519)
PDB ID(s): 1YBI
Times cited: 29
- Crystal structure of an alanine-glyoxylate aminotransferase from Anabaena sp. at 1.70 A resolution reveals a noncovalently linked PLP cofactor.
Proteins (2005) , 58(4), 971-5
(Pub Med ID: 15657930)
PDB ID(s): 1VJO
Times cited: 10
- Crystal structure of a formiminotetrahydrofolate cyclodeaminase (TM1560) from Thermotoga maritima at 2.80 A resolution reveals a new fold.
Proteins (2005) , 58(4), 976-81
(Pub Med ID: 15651027)
PDB ID(s): 1O5H
Times cited: 1
- Crystal structure of an alpha/beta serine hydrolase (YDR428C) from Saccharomyces cerevisiae at 1.85 A resolution.
Proteins (2005) , 58(3), 755-8
(Pub Med ID: 15624212)
PDB ID(s): 1VKH
Times cited: 7
- Crystal structure of a tandem cystathionine-beta-synthase (CBS) domain protein (TM0935) from Thermotoga maritima at 1.87 A resolution.
Proteins (2004) , 57(1), 213-7
(Pub Med ID: 15326606)
PDB ID(s): 1O50
Times cited: 26
- A flexible activin explains the membrane-dependent cooperative assembly of TGF-beta family receptors.
Molecular Cell (2004) , 15(3), 485-9
(Pub Med ID: 15304227)
PDB ID(s): 1S4Y
Times cited: 66
- Mechanistic studies of a flavin-dependent thymidylate synthase.
Biochemistry (2004) , 43(32), 10295-301
(Pub Med ID: 15301527)
Times cited: 36
- Crystal structure of a putative NADPH-dependent oxidoreductase (GI: 18204011) from mouse at 2.10 A resolution.
Proteins (2004) , 56(3), 629-33
(Pub Med ID: 15229897)
PDB ID(s): 1VJ1
Times cited: 6
- Crystal structure of an allantoicase (YIR029W) from Saccharomyces cerevisiae at 2.4 A resolution.
Proteins (2004) , 56(3), 619-24
(Pub Med ID: 15229895)
PDB ID(s): 1O59
Times cited: 2
- Crystal structure of a novel Thermotoga maritima enzyme (TM1112) from the cupin family at 1.83 A resolution.
Proteins (2004) , 56(3), 615-8
(Pub Med ID: 15229894)
PDB ID(s): 1O5U
Times cited: 3
- Crystal structure of a novel manganese-containing cupin (TM1459) from Thermotoga maritima at 1.65 A resolution.
Proteins (2004) , 56(3), 611-4
(Pub Med ID: 15229893)
PDB ID(s): 1O5N
Times cited: 12
- Crystal structure of an orphan protein (TM0875) from Thermotoga maritima at 2.00-A resolution reveals a new fold.
Proteins (2004) , 56(3), 607-10
(Pub Med ID: 15229892)
PDB ID(s): 1O22
Times cited: 2
- 1H-, 13C- and 15N-NMR assignment of the conserved hypothetical protein TM0487 from Thermotoga maritima.
Journal of Biomolecular NMR (2004) , 29(3), 453-4
(Pub Med ID: 15213465)
Times cited: 3
- NMR structure determination of the hypothetical protein TM1290 from Thermotoga maritima using automated NOESY analysis.
Journal of Biomolecular NMR (2004) , 29(3), 403-6
(Pub Med ID: 15213441)
PDB ID(s): 1RDU
Times cited: 15
- Crystal structure of a PIN (PilT N-terminus) domain (AF0591) from Archaeoglobus fulgidus at 1.90 A resolution.
Proteins (2004) , 56(2), 404-8
(Pub Med ID: 15211526)
PDB ID(s): 1O4W
Times cited: 14
- Crystal structure of a methionine aminopeptidase (TM1478) from Thermotoga maritima at 1.9 A resolution.
Proteins (2004) , 56(2), 396-400
(Pub Med ID: 15211524)
PDB ID(s): 1O0X
Times cited: 9
- Crystal structure of a putative oxalate decarboxylase (TM1287) from Thermotoga maritima at 1.95 A resolution.
Proteins (2004) , 56(2), 392-5
(Pub Med ID: 15211523)
PDB ID(s): 1O4T
Times cited: 14
- Crystal structure of O-acetylserine sulfhydrylase (TM0665) from Thermotoga maritima at 1.8 A resolution.
Proteins (2004) , 56(2), 387-91
(Pub Med ID: 15211522)
PDB ID(s): 1O58
Times cited: 9
- Crystal structure of a ribose-5-phosphate isomerase RpiB (TM1080) from Thermotoga maritima at 1.90 A resolution.
Proteins (2004) , 56(1), 171-5
(Pub Med ID: 15162497)
PDB ID(s): 1O1X
Times cited: 11
- Crystal structure of a glycerophosphodiester phosphodiesterase (GDPD) from Thermotoga maritima (TM1621) at 1.60 A resolution.
Proteins (2004) , 56(1), 167-70
(Pub Med ID: 15162496)
PDB ID(s): 1O1Z
Times cited: 12
- Predicted role for the archease protein family based on structural and sequence analysis of TM1083 and MTH1598, two proteins structurally characterized through structural genomics efforts.
Proteins (2004) , 56(1), 19-27
(Pub Med ID: 15162483)
Times cited: 8
- Crystal structure of an Udp-n-acetylmuramate-alanine ligase MurC (TM0231) from Thermotoga maritima at 2.3 A resolution.
Proteins (2004) , 55(4), 1078-81
(Pub Med ID: 15146505)
PDB ID(s): 1J6U
Times cited: 16
- Crystal structure of a type II quinolic acid phosphoribosyltransferase (TM1645) from Thermotoga maritima at 2.50 A resolution.
Proteins (2004) , 55(3), 768-71
(Pub Med ID: 15103640)
PDB ID(s): 1QPN
Times cited: 10
- Crystal structure of an aspartate aminotransferase (TM1255) from Thermotoga maritima at 1.90 A resolution.
Proteins (2004) , 55(3), 759-63
(Pub Med ID: 15103638)
PDB ID(s): 1O4S
Times cited: 7
- NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1.
Trends in Biochemical Sciences (2004) , 29(3), 106-10
(Pub Med ID: 15055202)
Times cited: 3
- Crystal structure of a phosphoribosylaminoimidazole mutase PurE (TM0446) from Thermotoga maritima at 1.77-A resolution.
Proteins (2004) , 55(2), 474-8
(Pub Med ID: 15048837)
PDB ID(s): 1O4V
Times cited: 8
- Crystal structure of a putative PII-like signaling protein (TM0021) from Thermotoga maritima at 2.5 A resolution.
Proteins (2004) , 54(4), 810-3
(Pub Med ID: 14997579)
PDB ID(s): 1O51
Times cited: 15
- Crystal structure of an HEPN domain protein (TM0613) from Thermotoga maritima at 1.75 A resolution.
Proteins (2004) , 54(4), 806-9
(Pub Med ID: 14997578)
Times cited: 3
- Crystal structure of a putative glutamine amido transferase (TM1158) from Thermotoga maritima at 1.7 A resolution.
Proteins (2004) , 54(4), 801-5
(Pub Med ID: 14997577)
PDB ID(s): 1O1Y
Times cited: 2
- Crystal structure of an iron-containing 1,3-propanediol dehydrogenase (TM0920) from Thermotoga maritima at 1.3 A resolution.
Proteins (2004) , 54(1), 174-7
(Pub Med ID: 14705036)
PDB ID(s): 1O2D
Times cited: 19
- Crystal structure of gamma-glutamyl phosphate reductase (TM0293) from Thermotoga maritima at 2.0 A resolution.
Proteins (2004) , 54(1), 157-61
(Pub Med ID: 14705032)
Times cited: 7
- Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization.
BMC Bioinformatics (2003) , 4(5), 46
(Pub Med ID: 14536023)
Times cited: 22
- Crystal structure of uronate isomerase (TM0064) from Thermotoga maritima at 2.85 A resolution.
Proteins (2003) , 53(1), 142-5
(Pub Med ID: 12945057)
Times cited: 9
- Structure analysis of peptide deformylases from Streptococcus pneumoniae, Staphylococcus aureus, Thermotoga maritima and Pseudomonas aeruginosa: snapshots of the oxygen sensitivity of peptide deformylase.
Journal of Molecular Biology (2003) , 330(2), 309-21
(Pub Med ID: 12823970)
Times cited: 24
- Functional analysis of substrate and cofactor complex structures of a thymidylate synthase-complementing protein.
Structure (2003) , 11(6), 677-90
(Pub Med ID: 12791256)
Times cited: 41
- HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins.
Trends in Biochemical Sciences (2003) , 28(5), 224-6
(Pub Med ID: 12765831)
Times cited: 11
- NMR assignment of the conserved hypothetical protein TM1290 of Thermotoga maritima.
Journal of Biomolecular NMR (2003) , 25(2), 167-8
(Pub Med ID: 12652129)
Times cited: 10
- Crystal structure of a zinc-containing glycerol dehydrogenase (TM0423) from Thermotoga maritima at 1.5 A resolution.
Proteins (2003) , 50(2), 371-4
(Pub Med ID: 12486729)
Times cited: 6
- Crystal structure of thy1, a thymidylate synthase complementing protein from Thermotoga maritima at 2.25 A resolution.
Proteins (2002) , 49(1), 142-5
(Pub Med ID: 12211025)
Times cited: 36
2013
2012
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2008
2007
2006
2005
2004
2003
2002
Average number of citations per publication (structural): 9.0
Methodological and Other Publications
- Subzero temperature chromatography for reduced back-exchange and improved dynamic range in amide hydrogen/deuterium exchange mass spectrometry.
Analytical Chemistry (2012) , 84, 9601-8
(Pub Med ID: 23025328)
Times cited: 0
- Identification of unknown protein function using metabolite cocktail screening.
Structure (2012) , 20, 1715-25
(Pub Med ID: 22940582)
Times cited: 1
- The J-UNIO protocol for automated protein structure determination by NMR in solution.
Journal of Biomolecular NMR (2012) , 53, 341-54
(Pub Med ID: 22752932)
Times cited: 0
- Adapting federated cyberinfrastructure for shared data collection facilities in structural biology.
Journal of Synchrotron Radiation (2012) , 19, 462-7
(Pub Med ID: 22514186)
Times cited: 1
- Accessing protein conformational ensembles using room-temperature X-ray crystallography.
Proceedings of the National Academy of Sciences of the United States of America (2011) , 108, 16247-52
(Pub Med ID: 21918110)
Times cited: 26
- Solubilization of Native Integral Membrane Proteins in Aqueous Buffer by Noncovalent Chelation with Monomethoxy Poly(ethylene glycol) (mPEG) Polymers.
Bioconjugate chemistry (2011) , 22, 1513-8
(Pub Med ID: 21740061)
Times cited: 0
- Internal organization of large protein families: Relationship between the sequence, structure, and function-based clustering.
Proteins (2011) , 79, 2389-402
(Pub Med ID: 21671455)
Times cited: 1
- Improved molecular replacement by density- and energy-guided protein structure optimization.
Nature (2011) , 473, 540-3
(Pub Med ID: 21532589)
Times cited: 33
- Metagenomics and the protein universe.
Current Opinion in Structural Biology (2011) , 21, 398-403
(Pub Med ID: 21497084)
Times cited: 6
- Distributed structure determination at the JCSG.
Acta Crystallographica Section D: Biological Crystallography (2011) , 67, 368-75
(Pub Med ID: 21460455)
Times cited: 1
- Synthetic symmetrization in the crystallization and structure determination of CelA from Thermotoga maritima.
Protein Science (2011) , 20, 168-78
(Pub Med ID: 21082721)
Times cited: 1
- TOPSAN: a dynamic web database for structural genomics.
Nucleic Acids Research (2011) , 39, D494-6
(Pub Med ID: 20961957)
Times cited: 4
- NMR in a crystallography-based high-throughput protein structure-determination environment.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1365-6
(Pub Med ID: 20944233)
Times cited: 3
- Ligands in PSI structures.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1309-16
(Pub Med ID: 20944227)
Times cited: 9
- Viewing the human microbiome through three-dimensional glasses: integrating structural and functional studies to better define the properties of myriad carbohydrate-active enzymes.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1261-4
(Pub Med ID: 20944220)
Times cited: 8
- New variants of known folds: do they bring new biology?
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1226-9
(Pub Med ID: 20944215)
Times cited: 2
- Structural classification of proteins and structural genomics: new insights into protein folding and evolution.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1190-7
(Pub Med ID: 20944210)
Times cited: 11
- DUFs: families in search of function.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1148-52
(Pub Med ID: 20944204)
Times cited: 19
- TOPSAN: use of a collaborative environment for annotating, analyzing and disseminating data on JCSG and PSI structures.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1143-7
(Pub Med ID: 20944203)
Times cited: 28
- The JCSG high-throughput structural biology pipeline.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1137-42
(Pub Med ID: 20944202)
Times cited: 17
- TOPSAN: a collaborative annotation environment for structural genomics.
BMC Bioinformatics (2010) , 11, 426
(Pub Med ID: 20716366)
Times cited: 7
- Sequential nearest-neighbor effects on computed 13Calpha chemical shifts.
Journal of Biomolecular NMR (2010) , 48, 23-30
(Pub Med ID: 20644980)
Times cited: 4
- Screening the mammalian extracellular proteome for regulators of embryonic human stem cell pluripotency.
Proceedings of the National Academy of Sciences of the United States of America (2010) , 107, 3552-7
(Pub Med ID: 20133595)
Times cited: 15
- NMR characterization of membrane protein-detergent micelle solutions by use of microcoil equipment.
Journal of the American Chemical Society (2009) , 131, 18450-6
(Pub Med ID: 19950959)
Times cited: 6
- Modeling discrete heterogeneity in X-ray diffraction data by fitting multi-conformers.
Acta Crystallographica Section D: Biological Crystallography (2009) , 65, 1107-17
(Pub Med ID: 19770508)
Times cited: 12
- Applications of bioinformatics to protein structures: how protein structure and bioinformatics overlap.
Methods in Molecular Biology (2009) , 569, 157-72
(Pub Med ID: 19623490)
Times cited: 0
- PSI-2: structural genomics to cover protein domain family space.
Structure (2009) , 17, 869-81
(Pub Med ID: 19523904)
Times cited: 55
- Mixing and matching detergents for membrane protein NMR structure determination.
Journal of the American Chemical Society (2009) , 131, 7320-6
(Pub Med ID: 19425578)
Times cited: 25
- Outcome of a workshop on applications of protein models in biomedical research.
Structure (2009) , 17, 151-9
(Pub Med ID: 19217386)
Times cited: 32
- Structural genomics is the largest contributor of novel structural leverage.
Journal of Structural and Functional Genomics (2009) , 10, 181-91
(Pub Med ID: 19194785)
Times cited: 34
- The Polymerase Incomplete Primer Extension (PIPE) method applied to high-throughput cloning and site-directed mutagenesis.
Methods in Molecular Biology (2009) , 498, 91-103
(Pub Med ID: 18988020)
Times cited: 26
- New paradigm for macromolecular crystallography experiments at SSRL: automated crystal screening and remote data collection.
Acta Crystallographica Section D: Biological Crystallography (2008) , 64, 1210-21
(Pub Med ID: 19018097)
Times cited: 40
- Image-based crystal detection: a machine-learning approach.
Acta Crystallographica Section D: Biological Crystallography (2008) , 64, 1187-95
(Pub Med ID: 19018095)
Times cited: 6
- Genome pool strategy for structural coverage of protein families.
Structure (2008) , 16, 1659-67
(Pub Med ID: 19000818)
Times cited: 7
- APSY-NMR with proteins: practical aspects and backbone assignment.
Journal of Biomolecular NMR (2008) , 42, 179-95
(Pub Med ID: 18841481)
Times cited: 19
- Solution NMR structure determination of proteins revisited.
Journal of Biomolecular NMR (2008) , 42, 155-8
(Pub Med ID: 18827972)
Times cited: 31
- Automated amino acid side-chain NMR assignment of proteins using (13)C- and (15)N-resolved 3D [ (1)H, (1)H]-NOESY.
Journal of Biomolecular NMR (2008) , 42, 23-33
(Pub Med ID: 18709333)
Times cited: 30
- Automated sequence-specific protein NMR assignment using the memetic algorithm MATCH.
Journal of Biomolecular NMR (2008) , 41, 127-38
(Pub Med ID: 18512031)
Times cited: 37
- Microscale NMR screening of new detergents for membrane protein structural biology.
Journal of the American Chemical Society (2008) , 130, 7357-63
(Pub Med ID: 18479092)
Times cited: 21
- Protein production and purification.
Nature Methods (2008) , 5, 135-46
(Pub Med ID: 18235434)
Times cited: 75
- Structural genomics: from genes to structures with valuable materials and many questions in between.
Nature Methods (2008) , 5, 129-32
(Pub Med ID: 18235432)
PDB ID(s):
Times cited: 22
- Contributions to the NIH-NIGMS Protein Structure Initiative from the PSI Production Centers
Structure (2008) , 16(1), 5-11
(Pub Med ID: 18184575)
Times cited: 30
- The JCSG MR pipeline: optimized alignments, multiple models and parallel searches.
Acta Crystallographica Section D: Biological Crystallography (2008) , 64(Pt 1), 133-40
(Pub Med ID: 18094477)
Times cited: 22
- Combining the polymerase incomplete primer extension method for cloning and mutagenesis with microscreening to accelerate structural genomics efforts.
Proteins (2008) , 71(2), 982-94
(Pub Med ID: 18004753)
Times cited: 90
- Five years of Increasing Structural Biology Throughput – A Retrospective Analysis.
Structure-based Drug Discovery, H. Jhoti and A. Leach, Eds., Springer (Netherlands) (2007) Structure-based Drug Discovery, H. Jhoti and A. Leach, Eds., Springer (Netherlands)
Times cited: no data - An X-ray microsource based system for crystal screening and beamline development during synchrotron shutdown periods.
Nuclear Instruments and Methods in Physics Research, Sec. A (2007) , 582, 233-235
(Pub Med ID: 19005562)
Times cited: 4
- The challenge of protein structure determination--lessons from structural genomics.
Protein Science (2007) , 16(11), 2472-82
(Pub Med ID: 17962404)
Times cited: 42
- Size and shape of detergent micelles determined by small-angle X-ray scattering.
Journal of Physical Chemistry B (2007) , 111(43), 12427-38
(Pub Med ID: 17924686)
Times cited: 51
- XtalPred: a web server for prediction of protein crystallizability.
Bioinformatics (2007) , 23(24), 3403-5
(Pub Med ID: 17921170)
Times cited: 51
- Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins.
Structure (2007) , 15, 1141-7
(Pub Med ID: 17850753)
Times cited: 30
- Computational protein function prediction: are we making progress?
Cellular and Molecular Life Science (2007) , 64(19-20), 2505-11
(Pub Med ID: 17611711)
Times cited: 30
- The 2006 automated function prediction meeting.
BMC Bioinformatics (2007) , 8 Suppl 4, S1-4
(Pub Med ID: 17570143)
Times cited: 7
- The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.
PLoS Biology (2007) , 5(3), e16
(Pub Med ID: 17355171)
Times cited: 330
- Using an alignment of fragment strings for comparing protein structures.
Bioinformatics (2007) , 23(2), e219-24
(Pub Med ID: 17237095)
Times cited: 19
- Tools for Computational Protein Annotation and Functional Assignment
In Silico technology in drug target identification and validation, D. León and S. Markel, Eds. New York; Marcel Dekker, Inc (2006) In Silico technology in drug target identification and validation, D. León and S. Markel, Eds. New York; Marcel Dekker, Inc
Times cited: no data - Representing and comparing protein structures as paths in three-dimensional space.
BMC Bioinformatics (2006) , 7(2), 460
(Pub Med ID: 17052359)
Times cited: 9
- Experimental and computational assessment of conditionally essential genes in Escherichia coli.
Journal of Bacteriology (2006) , 188(23), 8259-71
(Pub Med ID: 17012394)
Times cited: 77
- New avenues in protein function prediction.
Protein Science (2006) , 15(6), 1527-9
(Pub Med ID: 16731984)
Times cited: 29
- Expression, purification, and characterization of Thermotoga maritima membrane proteins for structure determination.
Protein Science (2006) , 15(5), 961-75
(Pub Med ID: 16597824)
Times cited: 28
- Automated protein NMR structure determination in crude cell-extract.
Journal of Biomolecular NMR (2006) , 34(1), 3-11
(Pub Med ID: 16505959)
Times cited: 6
- Automated diffraction image analysis and spot searching for high-throughput crystal screening
Journal of Applied Crystallography (2006) , 39, 112-9
Times cited: 24
- Advances in High-Throughput methods for crystallizing proteins
Biotechnology & Genetic Engineering Reviews (2006) , 23, 1-19
Times cited: 1
- Crystallization Optimum Solubility Screening: using crystallization results to identify the optimal buffer for protein crystal formation.
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2005) , 61(Pt 12), 1035-8
(Pub Med ID: 16511228)
Times cited: 13
- Towards miniaturization of a structural genomics pipeline using micro-expression and microcoil NMR.
Journal of Structural and Functional Genomics (2005) , 6(4), 259-67
(Pub Med ID: 16283429)
Times cited: 25
- Shotgun crystallization strategy for structural genomics II: crystallization conditions that produce high resolution structures for T. maritima proteins.
Journal of Structural and Functional Genomics (2005) , 6(2-3), 209-17
(Pub Med ID: 16211521)
Times cited: 13
- High-throughput protein production for X-ray crystallography and use of size exclusion chromatography to validate or refute computational biological unit predictions.
Journal of Structural and Functional Genomics (2005) , 6(2-3), 135-41
(Pub Med ID: 16211510)
Times cited: 9
- Methods and results for semi-automated cloning using integrated robotics.
Journal of Structural and Functional Genomics (2005) , 6(2-3), 89-94
(Pub Med ID: 16211504)
Times cited: 20
- Protein production and crystallization at the Joint Center for Structural Genomics
Journal of Structural and Functional Genomics (2005) , 6(2-3), 71-9
(Pub Med ID: 16211502)
Times cited: 24
- FFAS03: a server for profile--profile sequence alignments.
Nucleic Acids Research (2005) , 33(Web Server issue), W284-8
(Pub Med ID: 15980471)
Times cited: 220
- NMR screening and crystal quality of bacterially expressed prokaryotic and eukaryotic proteins in a structural genomics pipeline.
Proceedings of the National Academy of Sciences of the United States of America (2005) , 102(6), 1901-5
(Pub Med ID: 15677718)
Times cited: 47
- Real-space protein-model completion: an inverse-kinematics approach.
Acta Crystallographica Section D: Biological Crystallography (2005) , 61(Pt 1), 2-13
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Times cited: 29
- Reduction in diffuse-convective disturbances in nanovolume protein crystallization experiments
Journal of Applied Crystallography (2005) , 38, 87-90
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- Finding a cold needle in a warm haystack: infrared imaging applied to locating crycocooled crystals in loops
Journal of Applied Crystallography (2005) , 38, 69-77
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- High Throughput Cloning, Expression and Purification Technologies
Genomics, Proteomics, and Vaccines, G. Grandi, Ed. West Sussex, England; John Wiley & Sons, Ltd. (2004) Genomics, Proteomics, and Vaccines, G. Grandi, Ed. West Sussex, England; John Wiley & Sons, Ltd.
Times cited: no data - On the use of DXMS to produce more crystallizable proteins: structures of the T. maritima proteins TM0160 and TM1171.
Protein Science (2004) , 13(12), 3187-99
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PDB ID(s): 1VJL
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- Protein biophysical properties that correlate with crystallization success in Thermotoga maritima: maximum clustering strategy for structural genomics.
Journal of Molecular Biology (2004) , 344(4), 977-91
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- Scalable high-throughput micro-expression device for recombinant proteins.
Biotechniques (2004) , 37(3), 364
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- The site-specific incorporation of p-iodo-L-phenylalanine into proteins for structure determination.
Nature Biotechnology (2004) , 22, 1297-301
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Times cited: 60
- Crystallization data mining in structural genomics: using positive and negative results to optimize protein crystallization screens.
Methods (2004) , 34(3), 373-89
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- A scaleable and integrated crystallization pipeline applied to mining the Thermotoga maritima proteome.
Journal of Structural and Functional Genomics (2004) , 5(1-2), 133-46
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- NMR for structural proteomics of Thermotoga maritima: screening and structure determination.
Journal of Structural and Functional Genomics (2004) , 5(3), 205-15
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- Database searching by flexible protein structure alignment.
Protein Science (2004) , 13(7), 1841-50
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- The importance of alignment accuracy for molecular replacement.
Acta Crystallographica Section D: Biological Crystallography (2004) , 60(Pt 7), 1229-36
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Times cited: 86
- PCR primer selection tool optimized for high-throughput proteomics and structural genomics.
Biotechniques (2004) , 36(6), 1040-2
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- The interplay of fold recognition and experimental structure determination in structural genomics.
Current Opinion in Structural Biology (2004) , 14(3), 307-12
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- Automated sample mounting and alignment system for biological crystallography at a synchrotron source.
Structure (2004) , 12(4), 537-45
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Times cited: 56
- Long live structural biology.
Nature Structural & Molecular Biology (2004) , 11(4), 293-5
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- Comparative analysis of protein domain organization.
Genome Research (2004) , 14(3), 343-53
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- The status of structural genomics defined through the analysis of current targets and structures.
Pac Symp Biocomput. (2004) , 9, 375-86
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- Rapid refinement of crystallographic protein construct definition employing enhanced hydrogen/deuterium exchange MS.
Proceedings of the National Academy of Sciences of the United States of America (2004) , 101(3), 751-6
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Times cited: 73
- Automatic classification of protein crystallization images using a curve tracking algorithm
Journal of Applied Crystallography (2004) , 37, 279-287
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- The cost and value of three-dimensional protein structure
Drug Discovery World (2003) , 4, 35-48
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Methods in Enzymology (2003) , 368(Pt 6), 45-76
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- Flexible structure alignment by chaining aligned fragment pairs allowing twists.
Bioinformatics (2003) , 19 Suppl 2(20), ii246-55
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- Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family.
Protein Science (2003) , 12(9), 1872-81
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- Shotgun crystallization strategy for structural genomics: an optimized two-tiered crystallization screen against the Thermotoga maritima proteome.
Acta Crystallographica Section D: Biological Crystallography (2003) , 59(Pt 6), 1028-37
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- A fully integrated protein crystallization platform for small-molecule drug discovery.
Journal of Structural Biology (2003) , 142(1), 207-17
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- Challenges of structural genomics: bioinformatics
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Times cited: no data - The genesis of high-throughput structure-based drug discovery using protein crystallography.
Current Opinion in Chemical Biology (2002) , 6(5), 704-10
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- Blu-Ice and the Distributed Control System: software for data acquisition and instrument control at macromolecular crystallography beamlines.
Journal of Synchrotron Radiation (2002) , 9(Pt 6), 401-6
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- Computational analysis of crystallization trials.
Acta Crystallographica Section D: Biological Crystallography (2002) , 58(Pt 11), 1915-23
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- Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline.
Proceedings of the National Academy of Sciences of the United States of America (2002) , 99(18), 11664-9
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- Gene expression response to misfolded protein as a screen for soluble recombinant protein.
Protein Engineering, Design and Selection (2002) , 15(2), 153-60
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- An approach to rapid protein crystallization using nanodroplets
Journal of Applied Crystallography (2002) , 35, 278-281
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- An automated system to mount cryo-cooled protein crystals on a synchtrotron beam line, using compact sample cassettes and a small-scale robot
Journal of Applied Crystallography (2002) , 35, 720-6
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- Global efforts in structural genomics.
Science (2001) , 294(5540), 89-92
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- Tech.Sight. Industrializing structural biology.
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- High-throughput proteomics: protein expression and purification in the postgenomic world.
Protein Expression and Purification (2001) , 22(2), 159-64
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- High-throughput X-ray crystallography for structure-based drug design
Drug Discovery Today (2001) , 6, S113-8
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- Combining structural genomics and enzymology: completing the picture in metabolic pathways and enzyme active sites.
Current Opinion in Structural Biology (2000) , 10(6), 719-30
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- Automation of X-ray crystallography.
Nature Structural & Molecular Biology (2000) , 7 Suppl(20), 973-7
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- High-throughput protein crystallization.
Current Opinion in Structural Biology (2000) , 10(5), 558-63
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- Design of high-throughput methods of protein production for structural biology.
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Average number of citations per publication (methodological): 40.8