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   YP_001050605.1;MI4130F
 Protein Sequence Comparative Analysis   (PSCA)
 
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 YP_001050605.1    MI4130F            JCSG 398981 PDB Deposition 10-JUL-09              PDB id: 3nwp

Protein Sequence Information

TOPSAN
JCSG Internal annotations

ACCESSIONYP_001050605.1
DESCRIPTION6-phosphogluconolactonase
ORGANISMShewanella baltica os155
COMMENT 
DR UNIPROT; A3D4S3_SHEB5
DR SPTR; A3D4S3 (flat text); A3D4S3 (good view)
DR GenBank; YP_001050605
DR PDB; 3NWP; Identical; 28-JUL-10; 6-PHOSPHOGLUCONOLACTONASE;
DR PDB; 3LWD; Highly similar; 07-APR-10; 6-PHOSPHOGLUCONOLACTONASE;
DR PDB; 3LHI; Highly similar; 23-FEB-10; PUTATIVE 6-PHOSPHOGLUCONOLACTONASE;
DR PDB; 3TX2; Highly similar; 05-OCT-11; PROBABLE 6-PHOSPHOGLUCONOLACTONASE;
DR PDB; 3ICO; Highly similar; 28-JUL-09; 6-PHOSPHOGLUCONOLACTONASE;
DR PDB; 3OC6; Highly similar; 18-AUG-10; 6-PHOSPHOGLUCONOLACTONASE;
DR PDB; 3CH7; Highly similar; 18-MAR-08; 6-PHOSPHOGLUCONOLACTONASE;
DR PDB; 3CSS; Highly similar; 22-APR-08; 6-PHOSPHOGLUCONOLACTONASE;
DR KEGG; 3.1.1.31; Enzyme page
DR FFAS; 398981; Fold and function assignment.
DR TVPC; YP_001050605.1; Homologs in PDB, JCSG and SG center.
DR OVP; YP_001050605.1; Ortholog view popup.
DR TPM; YP_001050605.1; Target PDB monitor.
DR FSS; YP_001050605.1; Target function coverage.
PROPERTY Residues: 232 aa
Molecule Weight: 25424.48 Dalton
Isoelectric Point: 5.97
Extinction Coefficient: 26470
Gravy Index: -.13
Number of Met residues: 6
Percentage of Met residues: 2.59 %
Number of Cys residues: 3
Percentage of Cys residues: 1.29 %
SEQUENCE  amino acids 232 aa
>YP_001050605.1  gi|126174456|ref|YP_001050605.1| 6-phosphogluconolactonase [Shewanella baltica OS155]
MIKETVFKSFDTPSALEQQLASKIASQLQEAVDARGKASLVVSGGSTPLKLFQLLSMKSI
DWSDVYITLADERWVEADADASNERLVREHLLQNRASNAKFRGLKNMFSTAEAGADMAAE
SLSNFPRPFDVVVLGMGNDGHTCSWFPCSAELENALTTQALCVATNPTTAPHGRITLSKS
AILNSRQIYLHLVGEQKLSVYRQALESDDVHAMPIRAVLAQRKTPVDVFWSA

CDS  cDNA 699 bp
   1 atgattaaag aaaccgtatt caaatctttc gatacgccaa gtgcgttaga acagcaactg    60
  61 gccagcaaga ttgcaagcca gttacaggaa gccgtcgatg cccgcggaaa agcgagccta   120
 121 gtggtttccg gtggttcgac gccgcttaag ttatttcaac tattgagcat gaagtccatc   180
 181 gattggagtg atgtttatat cactctcgcc gatgagcgct gggttgaagc cgacgccgat   240
 241 gcttctaatg aacgtctagt gcgtgaacat ttattacaaa accgtgcgtc gaatgccaaa   300
 301 ttccgcggtt taaaaaacat gttttcgacc gcagaagcgg gcgccgatat ggccgccgag   360
 361 tctttgtcta atttcccacg tccttttgat gtggtggtat taggcatggg taacgatggt   420
 421 catacttgtt cttggtttcc ctgtagtgct gagcttgaaa atgcgctcac aacccaagcc   480
 481 ctgtgcgtgg cgactaaccc caccacagcg ccccacggca gaataacgct ctctaagagt   540
 541 gcgattctga acagcagaca aatttatctg cacttggtcg gggaacagaa attatccgta   600
 601 tatcgtcaag cgttagaaag tgatgatgtc catgctatgc ctatcagagc cgtattagcg   660
 661 cagcgtaaaa cgcccgttga tgtgttctgg agcgcttaa   699
Target constructs
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Chemical properties of sequence with tag
Notes

The start codon is a ATG/Methionine in most of sequences, but the GTG/V, TTG/L, CTG/I can be the start codons in some cases as expressing in E.coli. The start codon warning is labelled by RED color in sequence(sample: 10174951).

Protein sequence information contains the annotation contents from both of JCSG and SWISS-PROT. The SWISS-PROT/TrEMBL annotation is accessed from SWALL(SPTR) on the EBI SRS server. PDB homologes show both identical and highly similar proteins with released date and protein function.

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