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   TM0175;TM0175
Protein Sequence Comparative Analysis   (PSCA)
 
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TM0175    TM0175            JCSG 282055 PDB Deposition 04-JUN-18              PDB id: 1vku

Protein Sequence Information


TOPSAN
JCSG Internal annotations

ACCESSIONTM0175
DESCRIPTIONAcyl carrier protein (ACP).
ORGANISMThermotoga maritima
COMMENT-!- FUNCTION: THIS PROTEIN IS THE CARRIER OF THE GROWING FATTY ACID
CHAIN IN FATTY ACID BIOSYNTHESIS (BY SIMILARITY).
There is also an other Acyl carrier protein in Thermotoiga genome: TM0662.
DR UNIPROT; Q9WY19_THEMA
DR SPTR; Q9WY19 (flat text); Q9WY19 (good view)
DR GenBank; AAD35268
DR Pfam; PF00550; PP-binding;
DR Interpro; IPR003231; Acyl_carrier;
DR Interpro; IPR006162; Ppantne_S;
DR Interpro; IPR006163; Pp_bind;
DR PDB; 1VKU; Identical; 17-AUG-04; ACYL CARRIER PROTEIN;
DR PDB; 2EHS; Highly similar; 11-SEP-07; ACYL CARRIER PROTEIN;
DR PDB; 2EHT; Highly similar; 11-SEP-07; ACYL CARRIER PROTEIN;
DR PDB; 1X3O; Highly similar; 16-MAY-06; ACYL CARRIER PROTEIN;
DR PDB; 2QNW; Highly similar; 31-JUL-07; ACYL CARRIER PROTEIN;
DR PDB; 4DXE; Highly similar; 14-MAR-12; ACYL-CARRIER-PROTEIN SYNTHASE;
DR PDB; 1HY8; Highly similar; 23-JAN-02; ACYL CARRIER PROTEIN;
DR PDB; 2X2B; Highly similar; 16-MAR-10; ACYL CARRIER PROTEIN;
DR FFAS; 282055; Fold and function assignment.
DR TVPC; TM0175; Homologs in PDB, JCSG and SG center.
DR OVP; TM0175; Ortholog view popup.
DR TPM; TM0175; Target PDB monitor.
DR FSS; TM0175; Target function coverage.
PROPERTY Residues: 88 aa
Molecule Weight: 10284.21 Dalton
Isoelectric Point: 4.33
Extinction Coefficient: 0
Gravy Index: -.33
Number of Met residues: 3
Percentage of Met residues: 3.41 %
Number of Cys residues: 0
Percentage of Cys residues: 0.00 %
SEQUENCE  amino acids 88 aa
>TM0175  TM0175 acyl carrier protein (acpP-1)
MERKKLIAKFVEIASEKMGKDLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEE
ISKIRKVKDLIDIVIKKLEEIDDEVSEG

CDS  cDNA 264 bp
   1 gtggaaagaa aaaagctcat tgcgaaattt gtcgaaatcg cgtcagagaa aatgggaaaa    60
  61 gatcttgaaa cggttgatga ggaaaacacg ttcaaagagc tcggattcga ttcgatagac   120
 121 gtgatagatc ttgtgatgtt cttcgaggat gaatttgcct tgagaataga agatgaggaa   180
 181 atatcgaaaa tccggaaggt taaggatttg atcgatatcg taatcaagaa gctggaggag   240
 241 atcgacgatg aggtatctga gggc   264
Warning: the change of start codon from ATG/M to GTG/V;
Target constructs
Download sequence in PIR or FASTA format
Chemical properties of sequence with tag
GENE PREDICTION
LEFT END RIGHT END FRAME PREDICTOR SCORE 
184520 184786 2 Glimmer3 score 14.03 good
Genemark probabilities .68   .98 good
GenemarkHMM class 1 good

Notes

The start codon is a ATG/Methionine in most of sequences, but the GTG/V, TTG/L, CTG/I can be the start codons in some cases as expressing in E.coli. The start codon warning is labelled by RED color in sequence(sample: 10174951).

Protein sequence information contains the annotation contents from both of JCSG and SWISS-PROT. The SWISS-PROT/TrEMBL annotation is accessed from SWALL(SPTR) on the EBI SRS server. PDB homologes show both identical and highly similar proteins with released date and protein function.


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