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   BC039315;KN.B21279A.EFCAB6
Protein Sequence Comparative Analysis   (PSCA)
 
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BC039315    KN.B21279A.EFCAB6            JCSG 429677 PDB Deposition 15-AUG-10              PDB id: 5d67

Protein Sequence Information


TOPSAN
JCSG Internal annotations

ACCESSIONBC039315
DESCRIPTIONCASP Target
Description Hidden
ORGANISMHomo sapiens
COMMENT 
DR UNIPROT;
DR SPTR;
DR GenBank;
DR Pfam; PF08976; DUF1880;
DR PDB; 1WLZ; Identical; 23-AUG-05; CAP-BINDING PROTEIN COMPLEX INTERACTING PROTEIN 1 ISOFORM A;
DR FFAS; 429677; Fold and function assignment.
DR TVPC; BC039315; Homologs in PDB, JCSG and SG center.
DR OVP; BC039315; Ortholog view popup.
DR TPM; BC039315; Target PDB monitor.
DR FSS; BC039315; Target function coverage.
PROPERTY Residues: 1349 aa
Molecule Weight: 155742.96 Dalton
Isoelectric Point: 8.45
Extinction Coefficient: 125600
Gravy Index: -.57
Number of Met residues: 31
Percentage of Met residues: 2.30 %
Number of Cys residues: 31
Percentage of Cys residues: 2.30 %
SEQUENCE  amino acids 1349 aa
>BC039315  BC039315 Homo sapiens EF-hand calcium binding domain 6, mRNA (cDNA clone MGC:39806 IMAGE:5297436), c
MNCCRTLRELEIQVGEKVFKNIKTVMKAFELIDVNKTGLVRPQELRRVLETFCMKLRDEE
YEKFSKHYNIHKDTAVDYNVFLKNLSINNDLNLRYCMGNQEVSLENQQAKNSKKERLLGS
ASSEDIWRNYSLDEIERNFCLQLSKSYEKVEKALSAGDPCKGGYVSFNYLKIVLDTFVYQ
IPRRIFIQLMKRFGLKATTKINWKQFLTSFHEPQGLQVSSKGPLTKRNSINSRNESHKEN
IITKLFRHTEDHSASLKKALLIINTKPDGPITREEFRYILNCMAVKLSDSEFKELMQMLD
PGDTGVVNTSMFIDLIEENCRMRKTSPCTDAKTPFLLAWDSVEEIVHDTITRNLQAFYNM
LRSYDLGDTGRIGRNNFKKIMHVFCPFLTNAHFIKLCSKIQDIGSGRILYKKLLACIGID
GPPTVSPVLVPKDQLLSEHLQKDEQQQPDLSERTKLTEDKTTLTKKMTTEEVIEKFKKCI
QQQDPAFKKRFLDFSKEPNGKINVHDFKKVLEDTGMPMDDDQYALLTTKIGFEKEGMSYL
DFAAGFEDPPMRGPETTPPQPPTPSKSYVNSHFITAEECLKLFPRRLKESFRDPYSAFFK
TDADRDGIINMHDLHRLLLHLLLNLKDDEFERFLGLLGLRLSVTLNFREFQNLCEKRPWR
TDEAPQRLIRPKQKVADSELACEQAHQYLVTKAKNRWSDLSKNFLETDNEGNGILRRRDI
KNALYGFDIPLTPREFEKLWARYDTEGKGHITYQEFLQKLGINYSPAVHRPCAEDYFNFM
GHFTKPQQLQEEMKELQQSTEKAVAARDKLMDRHQDISKAFTKTDQSKTNYISICKMQEV
LEECGCSLTEGELTHLLNSWGVSRHDNAINYLDFLRAVENSKSTGAQPKEKEESMPINFA
TLNPQEVVRKIQEVVESSQLALSTAFSALGKEDTGFVKATEFGQVLKDFCYKLTDNQYHY
FLRKLRIHLTPYINWKYFLQNFSCFLEETADEWAEKMPKGPPPTSPKATADRDILARLHK
AVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFGRLWNEMPVNAKGRL
KYPDFLSRFSSETAATPMATGDSAVAQRGSSVPDVSEGTRSALSLPTQELRPGSKSQSHP
CTPASTTVIPGTPPLQNCDPIESRLRKRIQGCWRQLLKECKEKDVARQGDINASDFLALV
EKFNLDISKEECQQLIIKYDLKSNGKFAYCDFIQSCVLLLKAKESSLMHRMKIQNAHKMK
EAGAETPSFYSALLRIQPKIVHCWRPMRRTFKSYDEAGTGLLSVADFRTVLRQYSINLSE
EEFFHILEYYDKTLSSKISYNDFLRAFLQ

CDS  cDNA 4050 bp
   1 atgaattgct gccgcacatt aagagaactt gaaatccaag tgggagaaaa ggttttcaaa    60
  61 aacattaaga ctgttatgaa agcctttgag ctcattgatg ttaacaagac tggactggtt   120
 121 cgaccgcagg agctaagaag ggttctggag accttctgta tgaagttaag agacgaggaa   180
 181 tacgaaaagt tttcgaaaca ctacaacatc cacaaggata ctgcagtaga ttacaacgtg   240
 241 tttttgaaga atctcagcat aaataacgac ttgaacctta gatattgtat gggaaatcaa   300
 301 gaggtctcat tggagaatca acaagccaaa aattccaaaa aggaacgttt gctaggttct   360
 361 gcatcatctg aagatatctg gagaaactac tccttggatg aaattgagag gaacttttgt   420
 421 ctacaacttt cgaagtctta tgaaaaggtt gaaaaggccc tcagtgcagg ggacccctgt   480
 481 aaaggtggct acgtgtcttt taattatcta aagattgtcc tcgacacttt tgtataccaa   540
 541 ataccaagaa gaatttttat ccagttaatg aaaagatttg gacttaaagc caccactaaa   600
 601 atcaattgga agcaatttct aacatcattt catgagcctc aggggttgca agttagcagt   660
 661 aaaggtcccc tgacaaaaag aaatagcatc aactctagaa atgaatctca caaggaaaac   720
 721 atcatcacaa agttatttag acacactgaa gatcactctg cgtcactgaa gaaagcatta   780
 781 ctgataatca acactaaacc cgatggaccg ataacaagag aagaatttcg atatattcta   840
 841 aattgcatgg ctgtaaaact aagcgattca gaattcaaag aactaatgca aatgcttgac   900
 901 cctggggaca ctggagtggt caacaccagc atgtttattg atctgattga agagaactgt   960
 961 aggatgagaa agacatctcc ctgtacagat gctaagacac ctttcctcct ggcctgggat  1020
1021 tcagtggaag aaattgttca tgatacaatt actaggaacc tacaagcttt ttataacatg  1080
1081 ctacgctcat atgaccttgg agacacaggg cgcattggcc gaaataattt caagaaaatc  1140
1141 atgcacgtct tctgtccatt tttaacgaat gcacatttca taaaactctg cagtaagatt  1200
1201 caggacattg gttcaggaag aatcctttac aagaaacttt tggcatgcat aggaattgat  1260
1261 ggcccaccca ctgtctctcc agttcttgtt ccaaaggatc agctgttaag tgaacattta  1320
1321 caaaaagatg aacagcagca gccagatctt tctgagagaa ccaagctcac ggaggataaa  1380
1381 accaccctga ccaagaagat gaccacagaa gaagtgattg aaaaattcaa aaagtgtata  1440
1441 cagcagcagg acccggcatt caaaaaacga tttcttgact tcagcaagga gcctaatgga  1500
1501 aaaattaacg tgcatgactt taagaaggta ctggaagaca ctgggatgcc catggacgat  1560
1561 gatcagtatg ccctgctgac cactaaaata ggcttcgaga aggaagggat gagctatctt  1620
1621 gattttgcag caggatttga agatcctcca atgagagggc cggaaaccac tccgccgcag  1680
1681 cctccaactc cttcaaaaag ttacgtgaac agccacttta tcaccgcaga agaatgcctg  1740
1741 aagcttttcc ctaggaggct gaaggagtca ttccgggacc cctactctgc cttctttaaa  1800
1801 acagatgctg acagggatgg cataatcaac atgcatgacc ttcacagact gctcctgcat  1860
1861 ctactgctta atctcaaaga cgacgagttt gagcgcttcc ttggccttct tggcttgaga  1920
1921 cttagtgtca ctttaaattt tcgggaattt caaaatttgt gtgagaagag accatggaga  1980
1981 acagatgaag cgcctcaaag actcattaga ccaaaacaga aggttgcgga ttcagaacta  2040
2041 gcttgtgagc aggctcatca gtatcttgtt accaaagcaa aaaacagatg gtcagacttg  2100
2101 tctaagaatt ttctagaaac cgataatgag ggcaatggca ttcttcgacg ccgggacata  2160
2161 aagaacgcac tgtacggttt tgatattccc ctcacaccaa gagagtttga aaagctttgg  2220
2221 gcaagatacg acaccgaggg aaaagggcac attacttacc aggaattttt acagaaattg  2280
2281 ggtattaact attcgcctgc tgtccatcgg ccctgtgcag aggattattt caacttcatg  2340
2341 ggtcatttta caaagccaca gcagctacag gaagagatga aggagctgca gcagagcaca  2400
2401 gagaaggctg tggcagccag ggataagctt atggaccgcc atcaagatat cagcaaagca  2460
2461 ttcaccaaaa ctgatcaatc caaaaccaac tacatatcca tatgcaagat gcaggaagtg  2520
2521 ctggaagaat gtggatgttc tcttaccgaa ggggagctga cccatctgct aaacagttgg  2580
2581 ggagtcagcc ggcatgataa tgctatcaat tacctcgact tcctgagagc agtggagaac  2640
2641 agcaagtcaa caggagctca gcccaaggaa aaagaagaga gcatgccaat caattttgca  2700
2701 acgctgaatc cacaggaggt tgtgaggaag atccaggaag tagttgagtc ctcccagctg  2760
2761 gctttgtcca cggcattttc tgcattgggt aaagaggata caggatttgt aaaggctaca  2820
2821 gaattcggac aagttcttaa ggatttctgt tacaaactaa cggacaatca gtatcattat  2880
2881 tttttgagga aactaagaat tcatctaacc ccctatataa attggaaata ttttctccag  2940
2941 aactttagct gtttccttga ggagacagct gatgagtggg ctgagaaaat gcccaaaggc  3000
3001 ccgccgccta cctctcccaa ggccacagcc gacagagaca tcctggctcg cctccacaaa  3060
3061 gcagtgactt cccattacca tgccatcacc caggagtttg agaattttga caccatgaaa  3120
3121 acgaacacca tctccagaga ggagtttagg gccatttgta atcgccgcgt ccaaatcctg  3180
3181 acggacgaac agtttggcag actctggaac gagatgccag tcaatgccaa ggggaggctg  3240
3241 aaatacccgg acttcctgag caggttcagt tccgagacag cagccacacc aatggccact  3300
3301 ggtgactcgg ccgtggccca gagagggagc agtgtccctg acgtctcgga aggcaccaga  3360
3361 tctgccctct cattgcccac tcaggagctg agaccagggt caaagtcgca gagccacccc  3420
3421 tgtactccag cgagcaccac cgtgatcccg ggcactccac ccttgcagaa ctgtgatccc  3480
3481 atagagagca ggctccggaa gagaatccag ggctgctggc gccagctcct gaaagaatgc  3540
3541 aaggagaagg acgtggccag acagggggac atcaacgcct ccgatttcct ggctcttgtg  3600
3601 gagaaattca acctggacat aagcaaagag gagtgtcagc agctcattat aaaatacgac  3660
3661 ttaaagagca acgggaaatt tgcatactgt gacttcattc agagctgtgt cctcctgcta  3720
3721 aaagcaaagg aaagctcact gatgcacagg atgaagatcc agaatgcaca caagatgaaa  3780
3781 gaagccggcg cggagacgcc atctttttac tctgctctgc tgcgtattca gcccaaaatt  3840
3841 gtgcactgct ggaggccaat gcggcgcacg ttcaaaagct atgatgaggc tggaacaggg  3900
3901 ctgctaagcg tcgcagattt caggacggtc ctgagacagt acagcatcaa cctctctgag  3960
3961 gaagagttct tccatattct ggagtattac gataagacgc tgtcttcaaa aatctcctac  4020
4021 aacgacttcc tccgggcatt cctccagtag  4050
Target constructs
Download sequence in PIR or FASTA format
Chemical properties of sequence with tag

Notes

The start codon is a ATG/Methionine in most of sequences, but the GTG/V, TTG/L, CTG/I can be the start codons in some cases as expressing in E.coli. The start codon warning is labelled by RED color in sequence(sample: 10174951).

Protein sequence information contains the annotation contents from both of JCSG and SWISS-PROT. The SWISS-PROT/TrEMBL annotation is accessed from SWALL(SPTR) on the EBI SRS server. PDB homologes show both identical and highly similar proteins with released date and protein function.


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