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   ZP_02043836.1;SP17439A
Protein Sequence Comparative Analysis   (PSCA)
 
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ZP_02043836.1    REFERENCE SYSTEM

Accession: ZP_02043836.1
Description: gi|154508194|ref|ZP_02043836.1| hypothetical protein ACTODO_00688 [Actinomyces odontolyticus ATCC 17982]
Organism: ACTINOMYCES ODONTOLYTICUS ATCC 17982
Keyword: gi|154508194|ref|ZP_02043836.1| hypothetical protein ACTODO_00688 [Actinomyces odontolyticus ATCC 17982]

  

References           
PMID Filter
     Deleting genome references          
     Reference classification      Trusted or extreme similarity       Gathering or high similarity       Noise or low similarity
 
Sequence reference                    
   SP-EMBL: ;  PMID:;
   GenBank: ;  PMID:;
Family annotation                  
1.          trusted          evalue:5.4e-23
    Pfam:v3_1_0:8abp001   0;  PMID:;
2.          trusted          evalue:3.7e-18
    Pfam:v3_1_0:1gudA01   0;  PMID:;
3.          trusted          evalue:2.1e-18
    Pfam:v3_1_0:2dri002   0;  PMID:;
4.          trusted          evalue:8.0e-15
    Pfam:v3_1_0:1jx6A02   0;  PMID:;
5.          trusted          evalue:8.1e-13
    Pfam:v3_1_0:2dri001   0;  PMID:;
6.          trusted          evalue:1.8e-13
    Pfam:v3_1_0:8abp002   0;  PMID:;
7.          trusted          evalue:7.5e-11
    Pfam:v3_1_0:1gca001   0;  PMID:;
8.          trusted          evalue:1.0e-09
    Pfam:v3_1_0:1gca002   0;  PMID:;
9.          trusted          evalue:4.1e-03
    Pfam:v3_1_0:1jyeA02   0;  PMID:;
 
PDB similairty                    
No.    Start    End    Identity%    Coverage%    Evalue
1.          20          352          54          94.32          4.0e-95
     Pdb:4KVF THE CRYSTAL STRUCTURE OF A RHAMNOSE ABC TRANSPORTER, PERIPLA; PMID:;
2.          46          350          34          86.36          3.0e-47
3.          46          352          34          86.93          1.0e-45
     Pdb:1TM2 CRYSTAL STRUCTURE OF THE APO FORM OF THE SALMONELLA TYPHIMUR; PMID:;
     Pdb:1TJY CRYSTAL STRUCTURE OF SALMONELLA TYPHIMURIUM AI-2 RECEPTOR LS; PMID:;
4.          47          352          35          86.65          5.0e-43
     Pdb:3T95 CRYSTAL STRUCTURE OF LSRB FROM YERSINIA PESTIS COMPLEXED WIT; PMID:;
5.          52          352          32          85.23          2.0e-41
     Pdb:4PZ0 THE CRYSTAL STRUCTURE OF A SOLUTE BINDING PROTEIN FROM BACIL; PMID:;
6.          50          352          33          85.80          2.0e-37
     Pdb:3EJW CRYSTAL STRUCTURE OF THE SINORHIZOBIUM MELILOTI AI-2 RECEPTO; PMID:;
7.          69          299          27          65.34          4.0e-15
     Pdb:2H3H CRYSTAL STRUCTURE OF THE LIGANDED FORM OF THERMOTOGA MARITIM; PMID:;
8.          69          299          27          65.34          4.0e-15
     Pdb:2QVC CRYSTAL STRUCTURE OF A PERIPLASMIC SUGAR ABC TRANSPORTER FRO; PMID:;
9.          69          299          27          65.34          1.0e-14
     Pdb:3C6Q APO AND LIGAND-BOUND FORM OF A THERMOPHILIC GLUCOSE/XYLOSE B; PMID:;
10.          84          348          25          75.00          3.0e-14
     Pdb:3D02 CRYSTAL STRUCTURE OF PERIPLASMIC SUGAR-BINDING PROTEIN (YP_0; PMID:;
11.          43          295          25          71.59          1.0e-12
     Pdb:4WUT CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTE; PMID:;
12.          48          323          23          78.12          6.0e-09
     Pdb:2IOY CRYSTAL STRUCTURE OF THERMOANAEROBACTER TENGCONGENSIS RIBOSE; PMID:;
13.          49          295          24          69.89          2.0e-05
     Pdb:1DRK PROBING PROTEIN-PROTEIN INTERACTIONS: THE RIBOSE-BINDING PRO; PMID:7982928,2179563,1583688,1304894;
14.          55          311          23          72.73          4.0e-05
     Pdb:4RY9 CRYSTAL STRUCTURE OF CARBOHYDRATE TRANSPORTER SOLUTE BINDING; PMID:;
15.          49          295          24          69.89          6.0e-05
     Pdb:1DRJ PROBING PROTEIN-PROTEIN INTERACTIONS: THE RIBOSE-BINDING PRO; PMID:7982928,2179563,1583688,1304894;
16.          49          296          20          70.17          7.0e-05
     Pdb:4RXT CRYSTAL STRUCTURE OF CARBOHYDRATE TRANSPORTER SOLUTE BINDING; PMID:;
17.          49          295          24          69.89          8.0e-05
     Pdb:2DRI PROBING PROTEIN-PROTEIN INTERACTIONS: THE RIBOSE BINDING PRO; PMID:7982928,2179563,1583688,1304894;
     Pdb:1URP D-RIBOSE-BINDING PROTEIN FROM ESCHERICHIA COLI ; PMID:1583688,8157648,7982928,1304894;
18.          49          295          24          69.89          1.0e-04
     Pdb:1DBP IDENTICAL MUTATIONS AT CORRESPONDING POSITIONS IN TWO HOMOLO; PMID:8157648,2179563,1583688,1304894;
19.          49          295          23          69.89          6.0e-04
     Pdb:1BA2 D67R MUTANT OF D-RIBOSE-BINDING PROTEIN FROM ESCHERICHIA COL; PMID:1583688,8157648,9641984,7982928,1304894;
20.          49          295          23          69.89          7.0e-04
     Pdb:2GX6 RATIONAL STABILIZATION OF E. COLI RIBOSE BINDING PROTEIN ; PMID:;
 
NR homologs                 
No.    Start    End    Identity%    Coverage%    Evalue
 

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