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   YP_193882.1;GD9765C
Protein Sequence Comparative Analysis   (PSCA)
 
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YP_193882.1    REFERENCE SYSTEM

Accession: YP_193882.1
Description: Putative trp repressor binding protein.
Organism: Lactobacillus acidophilus.
Keyword: Complete proteome.

  

References           
PMID Filter
     Deleting genome references          
     Reference classification      Trusted or extreme similarity       Gathering or high similarity       Noise or low similarity
 
Sequence reference                    
   SP-EMBL: Q5FKC3;  PMID:;
   GenBank: YP_193882;  PMID:;
Family annotation                  
1.          trusted          evalue:8.5e-12
    Pfam:v3_1_0:1oboA00   0;  PMID:;
2.          trusted          evalue:8.9e-12
    Pfam:v3_1_0:1e5dA01   0;  PMID:;
3.          trusted          evalue:2.3e-10
    Pfam:v3_1_0:5nul000   0;  PMID:;
4.          trusted          evalue:3.9e-09
    Pfam:v3_1_0:1ydgA00   0;  PMID:;
5.          trusted          evalue:1.2e-08
    Pfam:v3_1_0:2fcr000   0;  PMID:;
6.          trusted          evalue:6.2e-08
    Pfam:v3_1_0:1f4pA00   0;  PMID:;
7.          trusted          evalue:3.8e-08
    Pfam:v3_1_0:1vmeA02   0;  PMID:;
 
PDB similairty                    
No.    Start    End    Identity%    Coverage%    Evalue
1.          1          150          100          99.33          1.0e-83
     Pdb:2MWM NMR STRUCTURE OF THE PROTEIN YP_193882.1 FROM LACTOBACILLUS ; PMID:;
     Pdb:2N1M NMR STRUCTURE OF THE APO-FORM OF THE FLAVOPROTEIN YP_193882.; PMID:;
     Pdb:3EDO CRYSTAL STRUCTURE OF FLAVOPROTEIN IN COMPLEX WITH FMN (YP_19; PMID:;
2.          3          132          28          86.00          4.0e-04
     Pdb:3KLB CRYSTAL STRUCTURE OF PUTATIVE FLAVOPROTEIN IN COMPLEX WITH F; PMID:;
 
NR homologs                 
No.    Start    End    Identity%    Coverage%    Evalue
1.          1          150          100          99.33          4.0e-83
     gi|58254614|gb|AAV42851.1| putative trp repressor binding;  PMID:;
     gi|58337297|ref|YP_193882.1| putative trp repressor binding;  PMID:;
2.          1          94          53          62.00          2.0e-19
     gi|58254710|gb|AAV42947.1| putative flavodoxin [Lactobaci;  PMID:;
     gi|58337393|ref|YP_193978.1| putative flavodoxin [Lactobaci;  PMID:;
3.          1          142          38          94.00          5.0e-18
     gi|62514439|ref|ZP_00385942.1| COG0716: Flavodoxins [Lactobac;  PMID:;
4.          1          113          41          74.67          3.0e-16
     gi|89078618|gb|EAR57955.1| hypothetical protein LreuDRAFT;  PMID:;
     gi|89091560|ref|ZP_01164554.1| hypothetical protein LreuDRAFT;  PMID:;
5.          4          148          29          96.00          1.0e-10
     gi|89090461|ref|ZP_01163509.1| conserved hypothetical protein;  PMID:;
     gi|89079714|gb|EAR58997.1| conserved hypothetical protein;  PMID:;
6.          4          148          29          96.00          3.0e-10
     gi|91804806|gb|EAS89643.1| conserved hypothetical protein;  PMID:;
     gi|92088449|ref|ZP_01273411.1| conserved hypothetical protein;  PMID:;
7.          4          128          31          82.67          1.0e-09
     gi|90820305|gb|ABD98944.1| Flavodoxin [Lactobacillus sali;  PMID:;
     gi|90961111|ref|YP_535027.1| Flavodoxin [Lactobacillus sali;  PMID:;
8.          6          118          30          74.67          3.0e-08
     gi|29338702|gb|AAO76502.1| conserved hypothetical protein;  PMID:;
     gi|29346805|ref|NP_810308.1| hypothetical protein BT1395 [B;  PMID:;
9.          4          114          27          73.33          3.0e-07
     gi|88602916|ref|YP_503094.1| transcriptional regulator, Ars;  PMID:;
     gi|88188378|gb|ABD41375.1| transcriptional regulator, Ars;  PMID:;
10.          4          135          29          87.33          4.0e-07
     gi|26554131|ref|NP_758065.1| flavodoxin [Mycoplasma penetra;  PMID:;
     gi|26454139|dbj|BAC44469.1| conserved hypothetical protein;  PMID:;
11.          4          114          29          73.33          6.0e-07
     gi|15678867|ref|NP_275984.1| hypothetical protein MTH847 [M;  PMID:;
     gi|2621938|gb|AAB85345.1| unknown [Methanothermobacter t;  PMID:;
12.          1          116          33          76.67          1.0e-06
     gi|76588134|gb|EAO64545.1| flavodoxin, putative [Thermoan;  PMID:;
     gi|76796464|ref|ZP_00778825.1| flavodoxin, putative [Thermoan;  PMID:;
13.          2          120          29          78.67          2.0e-06
     gi|88941961|ref|ZP_01147341.1| hypothetical protein AcryDRAFT;  PMID:;
     gi|88919298|gb|EAR38469.1| hypothetical protein AcryDRAFT;  PMID:;
14.          3          116          33          75.33          3.0e-06
     gi|78193579|gb|ABB31346.1| Flavodoxin/nitric oxide syntha;  PMID:;
     gi|78222324|ref|YP_384071.1| Flavodoxin/nitric oxide syntha;  PMID:;
15.          4          137          32          88.67          5.0e-06
     gi|15896658|ref|NP_350007.1| Flavodoxin [Clostridium acetob;  PMID:;
     gi|15026505|gb|AAK81347.1| Flavodoxin [Clostridium acetob;  PMID:;
16.          4          107          26          68.67          5.0e-06
     gi|88602568|ref|YP_502746.1| hypothetical protein Mhun_1284;  PMID:;
     gi|88188030|gb|ABD41027.1| hypothetical protein Mhun_1284;  PMID:;
17.          4          119          34          76.67          7.0e-06
     gi|84358557|ref|ZP_00983331.1| COG0655: Multimeric flavodoxin;  PMID:;
18.          4          119          33          76.67          1.0e-05
     gi|74017391|ref|ZP_00688015.1| Flavoprotein WrbA [Burkholderi;  PMID:;
19.          3          116          32          75.33          1.0e-05
     gi|39983187|gb|AAR34581.1| flavodoxin family protein [Geo;  PMID:;
     gi|39996307|ref|NP_952258.1| flavodoxin family protein [Geo;  PMID:14671304;
20.          4          118          28          76.00          1.0e-05
     gi|52216061|dbj|BAD48654.1| conserved hypothetical protein;  PMID:;
     gi|53713196|ref|YP_099188.1| flavodoxin [Bacteroides fragil;  PMID:;
21.          1          116          30          76.67          2.0e-05
     gi|45357996|ref|NP_987553.1| putative flavodoxin [Methanoco;  PMID:;
     gi|44920753|emb|CAF29989.1| putative flavodoxin [Methanoco;  PMID:;
22.          4          117          29          75.33          3.0e-05
     gi|91205723|ref|YP_538078.1| Tryptophan repressor binding p;  PMID:;
     gi|91069267|gb|ABE04989.1| Tryptophan repressor binding p;  PMID:;
23.          4          117          28          75.33          3.0e-05
     gi|60280079|gb|AAX16418.1| flavodoxin [uncultured murine ;  PMID:;
24.          4          127          27          82.00          3.0e-05
     gi|84489364|ref|YP_447596.1| hypothetical protein Msp_0554 ;  PMID:;
     gi|84372683|gb|ABC56953.1| hypothetical protein Msp_0554 ;  PMID:;
25.          3          150          25          98.00          3.0e-05
     gi|60681618|ref|YP_211762.1| flavodoxin [Bacteroides fragil;  PMID:;
     gi|60493052|emb|CAH07833.1| conserved hypothetical protein;  PMID:;
26.          4          119          32          76.67          6.0e-05
     gi|67548485|ref|ZP_00426373.1| Flavoprotein WrbA [Burkholderi;  PMID:;
     gi|67530211|gb|EAM27056.1| Flavoprotein WrbA [Burkholderi;  PMID:;
27.          4          136          25          88.00          6.0e-05
     gi|23023473|ref|ZP_00062708.1| COG0716: Flavodoxins [Leuconos;  PMID:;
28.          5          137          29          88.00          1.0e-04
     gi|84489366|ref|YP_447598.1| hypothetical protein Msp_0556 ;  PMID:;
     gi|84372685|gb|ABC56955.1| conserved hypothetical protein;  PMID:;
29.          3          141          28          92.00          2.0e-04
     gi|53715589|ref|YP_101581.1| flavodoxin [Bacteroides fragil;  PMID:;
     gi|52218454|dbj|BAD51047.1| probable flavodoxin [Bacteroid;  PMID:;
30.          3          141          28          92.00          2.0e-04
     gi|60494973|emb|CAH09789.1| conserved hypothetical protein;  PMID:;
     gi|60683539|ref|YP_213683.1| flavodoxin [Bacteroides fragil;  PMID:;
31.          4          134          26          86.67          2.0e-04
     gi|58254716|gb|AAV42953.1| putative exported [Lactobacill;  PMID:;
     gi|58337399|ref|YP_193984.1| putative exported [Lactobacill;  PMID:15671160;
32.          3          148          25          96.67          3.0e-04
     gi|72395485|gb|AAZ69758.1| hypothetical protein Mbar_A078;  PMID:;
     gi|73668323|ref|YP_304338.1| hypothetical protein Mbar_A078;  PMID:;
33.          4          119          31          76.67          4.0e-04
     gi|77965297|gb|ABB06678.1| Flavoprotein WrbA [Burkholderi;  PMID:;
     gi|78060747|ref|YP_367322.1| Flavoprotein WrbA [Burkholderi;  PMID:;
34.          4          122          29          78.67          4.0e-04
     gi|77637610|gb|EAO80058.1| flavodoxin [Alkaliphilus metal;  PMID:;
     gi|77686583|ref|ZP_00801923.1| flavodoxin [Alkaliphilus metal;  PMID:;
35.          4          116          28          74.67          4.0e-04
     gi|18892727|gb|AAL80838.1| hypothetical protein [Pyrococc;  PMID:;
     gi|18977086|ref|NP_578443.1| hypothetical protein PF0714 [P;  PMID:;
36.          4          119          31          76.67          5.0e-04
     gi|84352241|ref|ZP_00977210.1| COG0655: Multimeric flavodoxin;  PMID:;
37.          4          116          30          74.67          5.0e-04
     gi|89893316|ref|YP_516803.1| hypothetical protein DSY0570 [;  PMID:;
     gi|89332764|dbj|BAE82359.1| hypothetical protein [Desulfit;  PMID:;
38.          1          124          27          82.00          5.0e-04
     gi|89145010|emb|CAJ80379.1| trp repressor binding protein ;  PMID:;
     gi|56603866|emb|CAG44845.1| trp repressor binding protein ;  PMID:15640799;
     gi|56707374|ref|YP_169270.1| trp repressor binding protein ;  PMID:15640799;
     gi|89257179|ref|YP_514541.1| trp repressor binding protein ;  PMID:;
39.          4          128          27          82.67          5.0e-04
     gi|19713547|gb|AAL94328.1| Flavodoxin [Fusobacterium nucl;  PMID:;
     gi|19703467|ref|NP_603029.1| Flavodoxin [Fusobacterium nucl;  PMID:;
40.          4          119          31          76.67          7.0e-04
     gi|105897676|gb|ABF80634.1| Flavoprotein WrbA [Burkholderi;  PMID:;
41.          4          116          30          74.67          7.0e-04
42.          4          116          28          74.67          7.0e-04
     gi|84372684|gb|ABC56954.1| hypothetical protein Msp_0555 ;  PMID:;
     gi|84489365|ref|YP_447597.1| hypothetical protein Msp_0555 ;  PMID:;
 

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