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   YP_001714229.1;SP2417A
Protein Sequence Comparative Analysis   (PSCA)
 
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YP_001714229.1    REFERENCE SYSTEM

Accession: YP_001714229.1
Description: gi|169796436|ref|YP_001714229.1| ankyrin repeat-containing protein [Acinetobacter baumannii AYE]
Organism: Acinetobacter baumannii AYE
Keyword: gi|169796436|ref|YP_001714229.1| ankyrin repeat-containing protein [Acinetobacter baumannii AYE]

  

References           
PMID Filter
     Deleting genome references          
     Reference classification      Trusted or extreme similarity       Gathering or high similarity       Noise or low similarity
 
Sequence reference                    
   SP-EMBL: ;  PMID:;
   GenBank: ;  PMID:;
Family annotation                  
1.          trusted          evalue:1.8e-52
    Pfam:v3_1_0:1n11A00   0;  PMID:;
2.          trusted          evalue:2.6e-49
    Pfam:v3_1_0:2f8yB00   0;  PMID:;
3.          trusted          evalue:9.9e-49
    Pfam:v3_1_0:1k1aA00   0;  PMID:;
4.          trusted          evalue:8.4e-48
    Pfam:v3_1_0:1wdyA00   0;  PMID:;
5.          trusted          evalue:1.7e-47
    Pfam:v3_1_0:1iknD00   0;  PMID:;
6.          trusted          evalue:2.0e-46
    Pfam:v3_1_0:1yyhB00   0;  PMID:;
7.          trusted          evalue:2.1e-49
    Pfam:v3_1_0:1uohA00   0;  PMID:;
8.          trusted          evalue:9.1e-51
    Pfam:v3_1_0:1ixvA00   0;  PMID:;
9.          trusted          evalue:6.9e-43
    Pfam:v3_1_0:1sw6A00   0;  PMID:;
10.          trusted          evalue:3.3e-35
    Pfam:v3_1_0:2bkgA00   0;  PMID:;
11.          trusted          evalue:4.7e-35
    Pfam:v3_1_0:1bd8000   0;  PMID:;
12.          trusted          evalue:2.5e-34
    Pfam:v3_1_0:1bi7B00   0;  PMID:;
13.          trusted          evalue:1.4e-26
    Pfam:v3_1_0:1ycsB01   0;  PMID:;
14.          trusted          evalue:2.3e-24
    Pfam:v3_1_0:1ympA00   0;  PMID:;
15.          trusted          evalue:9.7e-25
    Pfam:v3_1_0:1s70B01   0;  PMID:;
16.          trusted          evalue:1.4e-22
    Pfam:v3_1_0:1n0rA00   0;  PMID:;
17.          trusted          evalue:2.9e-23
    Pfam:v3_1_0:1n0qB00   0;  PMID:;
18.          trusted          evalue:4.2e-23
    Pfam:v3_1_0:1s70B02   0;  PMID:;
19.          trusted          evalue:4.9e-08
    Pfam:PF00023   Ankyrin repeat;  PMID:9013872,2141669;
 
PDB similairty                    
No.    Start    End    Identity%    Coverage%    Evalue
1.          48          230          45          77.12          3.0e-36
     Pdb:3HRA CRYSTAL STRUCTURE OF EF0377 AN ANKYRIN REPEAT PROTEIN ; PMID:;
2.          78          235          39          66.53          1.0e-19
     Pdb:4HQD CRYSTAL STRUCTURE OF ENGINEERED PROTEIN. NORTHEAST STRUCTURA; PMID:;
3.          78          235          39          66.53          7.0e-19
4.          78          235          37          66.53          1.0e-18
5.          78          235          37          66.53          2.0e-18
6.          78          230          38          64.41          4.0e-18
     Pdb:4HLL CRYSTAL STRUCTURE OF ARTIFICIAL ANKYRIN REPEAT PROTEIN_ANK(G; PMID:;
7.          78          230          39          64.41          1.0e-17
     Pdb:4YDY CRYSTAL STRUCTURE OF DARPIN 44C12V5 IN COMPLEX WITH HUMAN IL; PMID:;
     Pdb:4YDW CRYSTAL STRUCTURE OF ANTI-IL4 DARPIN 44C12V5 ; PMID:;
8.          78          230          37          64.41          3.0e-17
     Pdb:2XEH STRUCTURAL DETERMINANTS FOR IMPROVED THERMAL STABILITY OF DE; PMID:;
9.          44          163          38          50.42          5.0e-17
     Pdb:1N0R 4ANK: A DESIGNED ANKYRIN REPEAT PROTEIN WITH FOUR IDENTICAL ; PMID:12461176;
10.          78          230          37          64.41          1.0e-16
     Pdb:2XEE STRUCTURAL DETERMINANTS FOR IMPROVED THERMAL STABILITY OF DE; PMID:;
11.          78          230          39          64.41          3.0e-16
     Pdb:4HRM STRUCTURAL BASIS FOR ELICITING A CYTOTOXIC EFFECT IN HER2- O; PMID:;
12.          78          230          36          64.41          3.0e-15
     Pdb:1SVX CRYSTAL STRUCTURE OF A DESIGNED SELECTED ANKYRIN REPEAT PROT; PMID:;
13.          48          197          33          63.14          4.0e-15
     Pdb:3NOC DESIGNED ANKYRIN REPEAT PROTEIN (DARPIN) BINDERS TO ACRB: PL; PMID:;
14.          78          230          37          64.41          7.0e-15
     Pdb:4K5B CO-CRYSTALLIZATION WITH CONFORMATION-SPECIFIC DESIGNED ANKYR; PMID:;
15.          78          230          35          64.41          7.0e-15
     Pdb:2QYJ CRYSTAL STRUCTURE OF A DESIGNED FULL CONSENSUS ANKYRIN ; PMID:;
16.          78          230          35          64.41          7.0e-15
     Pdb:4F6R TUBULIN:STATHMIN-LIKE DOMAIN COMPLEX ; PMID:;
     Pdb:4HNA KINESIN MOTOR DOMAIN IN THE ADP-MG-ALFX STATE IN COMPLEX WIT; PMID:;
17.          44          235          31          80.93          9.0e-15
     Pdb:4RLV CRYSTAL STRUCTURE OF ANKB 24 ANKYRIN REPEATS IN COMPLEX WITH; PMID:;
18.          78          230          35          64.41          1.0e-14
     Pdb:2BKG CRYSTAL STRUCTURE OF E3_19 A DESIGNED ANKYRIN REPEAT PROTEIN; PMID:;
19.          78          228          37          63.56          2.0e-14
     Pdb:2V5Q CRYSTAL STRUCTURE OF WILD-TYPE PLK-1 KINASE DOMAIN IN COMPLE; PMID:;
20.          78          230          35          64.41          6.0e-14
     Pdb:2P2C INHIBITION OF CASPASE-2 BY A DESIGNED ANKYRIN REPEAT PROTEIN; PMID:;
21.          78          230          35          64.41          6.0e-14
     Pdb:3NOG DESIGNED ANKYRIN REPEAT PROTEIN (DARPIN) BINDERS TO ACRB: PL; PMID:;
22.          78          230          36          64.41          8.0e-14
     Pdb:4LNU NUCLEOTIDE-FREE KINESIN MOTOR DOMAIN IN COMPLEX WITH TUBULIN; PMID:;
     Pdb:4DRX GTP-TUBULIN IN COMPLEX WITH A DARPIN ; PMID:;
     Pdb:4DUI DARPIN D1 BINDING TO TUBULIN BETA CHAIN (NOT IN COMPLEX) ; PMID:;
23.          78          230          35          64.41          1.0e-13
     Pdb:4J7W E3_5 DARPIN L86A MUTANT ; PMID:;
24.          78          230          35          64.41          1.0e-13
     Pdb:4JB8 CASPASE-7 IN COMPLEX WITH DARPIN C7_16 ; PMID:;
25.          78          230          35          64.41          1.0e-13
     Pdb:4LSZ CASPASE-7 IN COMPLEX WITH DARPIN D7.18 ; PMID:;
26.          78          230          35          64.41          2.0e-13
     Pdb:1MJ0 SANK E3_5: AN ARTIFICIAL ANKYRIN REPEAT PROTEIN ; PMID:12566564;
27.          48          197          32          63.14          2.0e-13
28.          44          215          30          72.46          2.0e-13
     Pdb:1WDY CRYSTAL STRUCTURE OF RIBONUCLEASE ; PMID:;
29.          44          232          28          79.66          2.0e-13
     Pdb:1N11 D34 REGION OF HUMAN ANKYRIN-R AND LINKER ; PMID:12456646;
30.          78          230          36          64.41          3.0e-13
     Pdb:4HRL STRUCTURAL BASIS FOR ELICITING A CYTOTOXIC EFFECT IN HER2- O; PMID:;
31.          92          230          36          58.47          3.0e-13
     Pdb:4K5C FROM DARPINS TO LOOPDARPINS: NOVEL LOOPDARPIN DESIGN ALLOWS ; PMID:;
32.          78          230          35          64.41          3.0e-13
     Pdb:4J8Y E3_5 DARPIN D77S MUTANT ; PMID:;
33.          92          230          37          58.47          5.0e-13
     Pdb:4K5A CO-CRYSTALLIZATION WITH CONFORMATION-SPECIFIC DESIGNED ANKYR; PMID:;
34.          78          230          34          64.41          5.0e-13
     Pdb:3Q9U IN SILICO AND IN VITRO CO-EVOLUTION OF A HIGH AFFINITY COMPL; PMID:;
     Pdb:3Q9N IN SILICO AND IN VITRO CO-EVOLUTION OF A HIGH AFFINITY COMPL; PMID:;
35.          78          230          33          64.41          2.0e-12
36.          40          215          26          74.15          7.0e-12
     Pdb:4OAV COMPLETE HUMAN RNASE L IN COMPLEX WITH 2-5A (5'-PPP HEPTAMER; PMID:;
     Pdb:4OAU COMPLETE HUMAN RNASE L IN COMPLEX WITH BIOLOGICAL ACTIVATORS; PMID:;
37.          40          215          26          74.15          8.0e-12
     Pdb:4G8L ACTIVE STATE OF INTACT SENSOR DOMAIN OF HUMAN RNASE L WITH 2; PMID:;
     Pdb:4G8K INTACT SENSOR DOMAIN OF HUMAN RNASE L IN THE INACTIVE SIGNAL; PMID:;
38.          78          197          36          50.42          9.0e-12
     Pdb:2XZT CASPASE-3 IN COMPLEX WITH DARPIN-3.4_I78S ; PMID:;
39.          55          235          31          76.27          9.0e-12
     Pdb:3AJI STRUCTURE OF GANKYRIN-S6ATPASE PHOTO-CROSS-LINKED SITE-SPECI; PMID:;
40.          78          230          34          64.41          1.0e-11
     Pdb:2Y1L CASPASE-8 IN COMPLEX WITH DARPIN-8.4 ; PMID:;
41.          78          230          34          64.41          1.0e-11
     Pdb:4ATZ AD5 KNOB IN COMPLEX WITH A DESIGNED ANKYRIN REPEAT PROTEIN ; PMID:;
42.          44          218          28          73.73          1.0e-11
     Pdb:3B7B EUHMT1 (GLP) ANKYRIN REPEAT DOMAIN (STRUCTURE 1) ; PMID:;
     Pdb:3B95 EUHMT1 (GLP) ANKYRIN REPEAT DOMAIN (STRUCTURE 2) ; PMID:;
43.          78          197          36          50.42          2.0e-11
     Pdb:2XZD CASPASE-3 IN COMPLEX WITH AN INHIBITORY DARPIN-3.4 ; PMID:;
44.          78          230          34          64.41          2.0e-11
     Pdb:4C48 CRYSTAL STRUCTURE OF ACRB-ACRZ COMPLEX ; PMID:;
     Pdb:4U95 COUPLING OF REMOTE ALTERNATING-ACCESS TRANSPORT MECHANISMS F; PMID:;
     Pdb:4DX5 TRANSPORT OF DRUGS BY THE MULTIDRUG TRANSPORTER ACRB INVOLVE; PMID:;
     Pdb:5ENP MBX2931 BOUND STRUCTURE OF BACTERIAL EFFLUX PUMP. ; PMID:;
     Pdb:5ENO MBX2319 BOUND STRUCTURE OF BACTERIAL EFFLUX PUMP. ; PMID:;
     Pdb:5ENQ MBX3132 BOUND STRUCTURE OF BACTERIAL EFFLUX PUMP. ; PMID:;
     Pdb:5ENS RHODAMINE BOUND STRUCTURE OF BACTERIAL EFFLUX PUMP. ; PMID:;
     Pdb:4DX7 TRANSPORT OF DRUGS BY THE MULTIDRUG TRANSPORTER ACRB INVOLVE; PMID:;
     Pdb:4U8Y COUPLING OF REMOTE ALTERNATING-ACCESS TRANSPORT MECHANISMS F; PMID:;
     Pdb:4U96 COUPLING OF REMOTE ALTERNATING-ACCESS TRANSPORT MECHANISMS F; PMID:;
     Pdb:5ENR MBX3135 BOUND STRUCTURE OF BACTERIAL EFFLUX PUMP. ; PMID:;
     Pdb:5ENT MINOCYCLINE BOUND STRUCTURE OF BACTERIAL EFFLUX PUMP. ; PMID:;
     Pdb:4DX6 TRANSPORT OF DRUGS BY THE MULTIDRUG TRANSPORTER ACRB INVOLVE; PMID:;
     Pdb:4U8V COUPLING OF REMOTE ALTERNATING-ACCESS TRANSPORT MECHANISMS F; PMID:;
     Pdb:5EN5 APO STRUCTURE OF BACTERIAL EFFLUX PUMP. ; PMID:;
45.          78          197          36          50.42          4.0e-11
     Pdb:2Y0B CASPASE-3 IN COMPLEX WITH AN INHIBITORY DARPIN-3.4_S76R ; PMID:;
46.          55          235          31          76.27          4.0e-11
     Pdb:2DVW STRUCTURE OF THE ONCOPROTEIN GANKYRIN IN COMPLEX WITH S6 ATP; PMID:;
     Pdb:2DWZ STRUCTURE OF THE ONCOPROTEIN GANKYRIN IN COMPLEX WITH S6 ATP; PMID:;
47.          34          236          27          85.59          6.0e-11
     Pdb:3UTM CRYSTAL STRUCTURE OF A MOUSE TANKYRASE-AXIN COMPLEX ; PMID:;
     Pdb:5HKP CRYSTAL STRUCTURE OF MOUSE TANKYRASE/HUMAN TRF1 COMPLEX ; PMID:;
48.          73          163          39          38.14          1.0e-10
     Pdb:1N0Q 3ANK: A DESIGNED ANKYRIN REPEAT PROTEIN WITH THREE IDENTICAL; PMID:12461176;
49.          55          235          31          76.27          1.0e-10
     Pdb:1TR4 SOLUTION STRUCTURE OF HUMAN ONCOGENIC PROTEIN GANKYRIN ; PMID:;
     Pdb:1UOH HUMAN GANKYRIN ; PMID:14573599;
50.          55          235          31          76.27          1.0e-10
     Pdb:4NIK STRUCTURE OF HUMAN GANKYRIN IN COMPLEX TO THE SINGLE CHAIN A; PMID:;
51.          78          197          36          50.42          2.0e-10
     Pdb:4HRN STRUCTURAL BASIS FOR ELICITING A CYTOTOXIC EFFECT IN HER2- O; PMID:;
52.          55          235          31          76.27          2.0e-10
     Pdb:1QYM X-RAY STRUCTURE OF HUMAN GANKYRIN ; PMID:;
53.          35          236          24          85.17          2.0e-10
     Pdb:4RLY CRYSTAL STRUCTURE OF ANKB ANKYRIN REPEATS (R1-R9) IN COMPLEX; PMID:;
54.          38          197          28          67.37          4.0e-10
     Pdb:2RFM STRUCTURE OF A THERMOPHILIC ANKYRIN REPEAT PROTEIN ; PMID:;
55.          78          197          35          50.42          6.0e-10
     Pdb:3ZUV CRYSTAL STRUCTURE OF A DESIGNED SELECTED ANKYRIN REPEAT PROT; PMID:;
 
NR homologs                 
No.    Start    End    Identity%    Coverage%    Evalue
 

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