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   YP_001299918.1;GS13848A
Protein Sequence Comparative Analysis   (PSCA)
 
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YP_001299918.1    REFERENCE SYSTEM

Accession: YP_001299918.1
Description: Putative uncharacterized protein.
Organism: Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154).
Keyword: Complete proteome.

  

References           
PMID Filter
     Deleting genome references          
     Reference classification      Trusted or extreme similarity       Gathering or high similarity       Noise or low similarity
 
Sequence reference                    
   SP-EMBL: A6L3N2;  PMID:;
   GenBank: YP_001299918;  PMID:;
Family annotation                  
1.          trusted          evalue:7.8e-10
    Pfam:v3_1_0:1qnrA00   0;  PMID:;
2.          trusted          evalue:5.2e-05
    Pfam:v3_1_0:1bhgA03   0;  PMID:;
3.          trusted          evalue:6.2e-05
    Pfam:v3_1_0:1jz7A03   0;  PMID:;
4.          trusted          evalue:3.0e-05
    Pfam:v3_1_0:1uuqA00   0;  PMID:;
5.          trusted          evalue:9.3e-05
    Pfam:v3_1_0:1eceA00   0;  PMID:;
6.          trusted          evalue:6.1e-05
    Pfam:v3_1_0:1bqcA00   0;  PMID:;
7.          trusted          evalue:1.2e-04
    Pfam:v3_1_0:1vjzA00   0;  PMID:;
8.          trusted          evalue:2.4e-04
    Pfam:v3_1_0:1ceo000   0;  PMID:;
9.          trusted          evalue:7.2e-04
    Pfam:v3_1_0:1cz1A00   0;  PMID:;
10.          trusted          evalue:2.1e-03
    Pfam:v3_1_0:1tvnA00   0;  PMID:;
11.          trusted          evalue:2.2e-03
    Pfam:v3_1_0:1edg000   0;  PMID:;
 
PDB similairty                    
No.    Start    End    Identity%    Coverage%    Evalue
1.          19          489          99          96.11          0.0e+00
     Pdb:4QFU CRYSTAL STRUCTURE OF A GLYCOSIDE HYDROLASE FAMILY 5 (BVU_264; PMID:;
2.          22          475          80          92.64          0.0e+00
     Pdb:3KZS CRYSTAL STRUCTURE OF GLYCOSYL HYDROLASE FAMILY 5 (NP_809925.; PMID:;
 
NR homologs                 
No.    Start    End    Identity%    Coverage%    Evalue
1.          1          475          78          96.93          0.0e+00
     gi|29346422|ref|NP_809925.1| hypothetical protein BT1012 [B;  PMID:12663928;
     gi|29338318|gb|AAO76119.1| conserved hypothetical protein;  PMID:12663928;
2.          14          465          42          92.23          1.0e-104
3.          38          465          44          87.32          1.0e-103
     gi|86142966|ref|ZP_01061388.1| hypothetical protein MED217_09;  PMID:;
     gi|85830411|gb|EAQ48870.1| hypothetical protein MED217_09;  PMID:17215843;
4.          25          468          31          90.59          1.0e-58
5.          36          434          24          81.39          6.0e-23
     gi|15890182|ref|NP_355854.1| hypothetical protein AGR_L_146;  PMID:11743194;
     gi|17938499|ref|NP_535288.1| hypothetical protein Atu4810 [;  PMID:11743193;
     gi|17743323|gb|AAL45604.1| hypothetical protein [Agrobact;  PMID:11743193;
     gi|15158360|gb|AAK88639.1| AGR_L_146p [Agrobacterium tume;  PMID:;
     gi|25379874|pir||E98139 hypothetical protein AGR_L_146;  PMID:11743194;
     gi|25379875|pir||AF3148 hypothetical protein Atu4810 [;  PMID:11743193;
6.          7          379          26          76.07          5.0e-17
     gi|16740540|gb|AAL27674.1| Bme25 [Brucella melitensis] ;  PMID:9308175,10338472,11598046;
     gi|17989178|ref|NP_541811.1| hypothetical protein BMEII0833;  PMID:12271122,11756688;
     gi|17985032|gb|AAL54075.1| hypothetical protein [Brucella;  PMID:11756688;
     gi|25379876|pir||AH3613 hypothetical protein BMEII0833;  PMID:11756688;
7.          37          390          23          72.19          5.0e-17
     gi|58255063|gb|AAV43300.1| putative beta-glucosidase [Lac;  PMID:15671160;
     gi|58337746|ref|YP_194331.1| putative beta-glucosidase [Lac;  PMID:15671160;
8.          43          435          22          80.16          1.0e-16
9.          7          379          25          76.07          2.0e-16
     gi|23463784|gb|AAN33628.1| conserved hypothetical protein;  PMID:12271122;
     gi|23500183|ref|NP_699623.1| hypothetical protein BRA0434 [;  PMID:12271122;
10.          37          323          25          58.49          7.0e-14
     gi|42519188|ref|NP_965118.1| hypothetical protein LJ1263 [L;  PMID:;
     gi|41583475|gb|AAS09084.1| hypothetical protein LJ_1263 [;  PMID:14983040;
11.          48          368          24          65.44          1.0e-13
     gi|47015471|gb|EAL06404.1| conserved hypothetical protein;  PMID:15115801;
     gi|47096122|ref|ZP_00233722.1| conserved hypothetical protein;  PMID:15115801;
12.          48          368          24          65.44          1.0e-13
     gi|16803076|ref|NP_464561.1| hypothetical protein lmo1036 [;  PMID:11679669;
     gi|16410438|emb|CAC99114.1| lmo1036 [Listeria monocytogene;  PMID:11679669;
     gi|25514882|pir||AD1204 hypothetical protein lmo1036 [;  PMID:11679669;
13.          48          368          25          65.44          2.0e-12
     gi|47092928|ref|ZP_00230709.1| conserved hypothetical protein;  PMID:15115801;
     gi|47018675|gb|EAL09427.1| conserved hypothetical protein;  PMID:15115801;
14.          48          368          24          65.44          2.0e-12
     gi|46907268|ref|YP_013657.1| hypothetical protein LMOf2365_;  PMID:15115801;
     gi|46880535|gb|AAT03834.1| conserved hypothetical protein;  PMID:15115801;
15.          36          306          26          55.21          3.0e-12
     gi|40744811|gb|EAA63967.1| hypothetical protein AN1791.2 ;  PMID:16372000;
     gi|67522669|ref|XP_659395.1| hypothetical protein AN1791.2 ;  PMID:16372000;
16.          32          387          24          72.60          2.0e-11
     gi|32446281|emb|CAD76109.1| conserved hypothetical protein;  PMID:12835416;
     gi|32475738|ref|NP_868732.1| hypothetical protein RB9146 [R;  PMID:12835416;
 

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