PSCA reference

TM0012;TM0012	Protein Sequence Comparative Analysis (PSCA)

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TM0012 REFERENCE SYSTEM

Accession: TM0012
Description: NADP-reducing hydrogenase, subunit A.
Organism: Thermotoga maritima.
Keyword: Complete proteome;

References

PMID Filter

Deleting genome references

Reference classification

Trusted or extreme similarity

Gathering or high similarity

Noise or low similarity

Sequence reference

SP-EMBL: Q9WXM7; PMID:10360571;
GenBank: AAD35106; PMID:10360571;

Family annotation

1.          trusted          evalue:1.2e-39
    Pfam:PF01257   Thioredoxin-like [2Fe-2S] ferredoxin;  PMID:;
2.          trusted          evalue:3.2e-18
    Pfam:v3_1_0:1m2dA00   0;  PMID:;
3.          trusted or gathering
    InterPro:IPR002023   Cmplx1_24kDa;  PMID:2029890,1445936,7690854;

PDB similairty

No.    Start    End    Identity%    Coverage%    Evalue
1.          22          161          31          78.98          6.0e-20
     Pdb:3M9S CRYSTAL STRUCTURE OF RESPIRATORY COMPLEX I FROM THERMUS THER; PMID:;
     Pdb:3IAM CRYSTAL STRUCTURE OF THE HYDROPHILIC DOMAIN OF RESPIRATORY C; PMID:;
     Pdb:3I9V CRYSTAL STRUCTURE OF THE HYDROPHILIC DOMAIN OF RESPIRATORY C; PMID:;
     Pdb:3IAS CRYSTAL STRUCTURE OF THE HYDROPHILIC DOMAIN OF RESPIRATORY C; PMID:;
     Pdb:4HEA CRYSTAL STRUCTURE OF THE ENTIRE RESPIRATORY COMPLEX I FROM T; PMID:;
     Pdb:2YBB FITTED MODEL FOR BOVINE MITOCHONDRIAL SUPERCOMPLEX I1III2IV ; PMID:;
     Pdb:2FUG CRYSTAL STRUCTURE OF THE HYDROPHILIC DOMAIN OF RESPIRATORY C; PMID:;
2.          89          172          51          47.16          2.0e-19
     Pdb:2AUV SOLUTION STRUCTURE OF HNDAC : A THIOREDOXIN-LIKE [2FE-2S] FE; PMID:;
3.          102          176          30          42.05          7.0e-04
     Pdb:1M2A CRYSTAL STRUCTURE AT 1.5 ANGSTROMS RESOLUTION OF THE WILD TY; PMID:10884354,12089152;
     Pdb:1F37 STRUCTURE OF A THIOREDOXIN-LIKE [2FE-2S] FERREDOXIN FROM AQU; PMID:10441520,10884354;

NR homologs

No.    Start    End    Identity%    Coverage%    Evalue
1.          1          176          100          99.43          3.0e-98
     gi|4980495|gb|AAD35106.1| NADP-reducing hydrogenase, sub; PMID:10360571;
     gi|15642787|ref|NP_227828.1| NADP-reducing hydrogenase, sub; PMID:10360571;
     gi|7431971|pir||F72430 NADP-reducing hydrogenase, sub; PMID:10360571;
2.          9          175          31          94.32          8.0e-67
     gi|128865|sp|P04394|NUHM_BOVIN NADH-ubiquinone oxidoreductase; PMID:2500970,2598272,6861757;
     gi|27807025|ref|NP_776990.1| NADH dehydrogenase flavoprotei; PMID:2598272,2500970;
     gi|89673|pir||B30113 NADH2 dehydrogenase (ubiquinon; PMID:6861757,2500970,2598272;
     gi|163399|gb|AAA87358.1| NADH-ubiquinone reductase 24 k; PMID:2500970;
3.          9          175          31          94.32          1.0e-66
     gi|21410924|gb|AAH30946.1| Ndufv2 protein [Mus musculus] ; PMID:12477932;
     gi|26347169|dbj|BAC37233.1| unnamed protein product [Mus m; PMID:10349636,11042159,11076861,11217851;
4.          9          175          31          94.32          3.0e-65
     gi|3123721|dbj|BAA25988.1| 24-kDa subunit of complex I [H; PMID:9570948;
5.          9          156          31          83.52          2.0e-60
     gi|20900762|ref|XP_128725.1| NADH dehydrogenase (ubiquinone; PMID:;
6.          8          175          29          94.89          2.0e-60
     gi|6689656|emb|CAB65523.1| subunit NUHM of protein NADH:U; PMID:10924914;
7.          21          175          32          87.50          1.0e-59
     gi|26353142|dbj|BAC40201.1| unnamed protein product [Mus m; PMID:10349636,11042159,11076861,11217851;
8.          9          174          29          93.75          2.0e-59
     gi|32412364|ref|XP_326662.1| NADH-UBIQUINONE OXIDOREDUCTASE; PMID:12712197;
     gi|28923082|gb|EAA32299.1| NADH-UBIQUINONE OXIDOREDUCTASE; PMID:12712197;
     gi|730212|sp|P40915|NUHM_NEUCR NADH-ubiquinone oxidoreductase; PMID:7947902,12655011;
     gi|18376247|emb|CAD21361.1| NADH-UBIQUINONE OXIDOREDUCTASE; PMID:;
     gi|1092497|prf||2024210B NADH/ubiquinone oxidoreductase; PMID:;
     gi|577595|emb|CAA54990.1| NUO-24 [Neurospora crassa] ; PMID:7947902;
9.          14          175          27          91.48          5.0e-58
     gi|23013440|ref|ZP_00053334.1| hypothetical protein [Magnetos; PMID:;
10.          8          172          31          93.18          1.0e-56
     gi|23000555|ref|ZP_00044483.1| hypothetical protein [Magnetoc; PMID:;
11.          11          175          26          93.18          1.0e-55
     gi|22967571|ref|ZP_00015164.1| hypothetical protein [Rhodospi; PMID:;
12.          16          175          32          90.34          3.0e-55
     gi|28261979|gb|EAA25483.1| NADH dehydrogenase I chain E [; PMID:;
13.          9          176          26          94.89          7.0e-55
     gi|34328782|gb|AAQ63695.1| NADH:ubiquinone oxidoreductase; PMID:;
14.          16          175          26          90.34          1.0e-53
     gi|23109558|ref|ZP_00095736.1| hypothetical protein [Novosphi; PMID:;
15.          6          175          27          96.02          3.0e-53
     gi|25519933|pir||D97514 complex I 24K chain (Y10142) [; PMID:11743194;
     gi|15156323|gb|AAK87069.1| AGR_C_2348p [Agrobacterium tum; PMID:;
     gi|17739679|gb|AAL42280.1| NADH ubiquinone oxidoreductase; PMID:11743193;
     gi|25522168|pir||AB2733 NADH ubiquinone oxidoreductase; PMID:11743193;
     gi|17935174|ref|NP_531964.1| NADH ubiquinone oxidoreductase; PMID:11743193;
     gi|15888603|ref|NP_354284.1| AGR_C_2348p [Agrobacterium tum; PMID:11743194;
16.          6          175          29          96.02          7.0e-53
     gi|25285034|pir||AD3396 NADH2 dehydrogenase (ubiquinon; PMID:11756688;
     gi|23501693|ref|NP_697820.1| NADH dehydrogenase I, E subuni; PMID:12271122;
     gi|17987437|ref|NP_540071.1| NADH-QUINONE OXIDOREDUCTASE CH; PMID:12271122,11756688;
     gi|17983130|gb|AAL52335.1| NADH-QUINONE OXIDOREDUCTASE CH; PMID:11756688;
     gi|23347615|gb|AAN29735.1| NADH dehydrogenase I, E subuni; PMID:;
17.          7          175          27          95.45          2.0e-52
     gi|18411985|ref|NP_567244.1| NADH dehydrogenase (ubiquinone; PMID:;
     gi|24797038|gb|AAN64531.1| At4g02580/T10P11_14 [Arabidops; PMID:;
     gi|15450451|gb|AAK96519.1| AT4g02580/T10P11_14 [Arabidops; PMID:;
18.          7          175          27          95.45          5.0e-52
     gi|6647650|sp|O22769|NUHM_ARATH NADH-ubiquinone oxidoreductase; PMID:10617198;
     gi|3892051|gb|AAC78260.1|AAC78260 predicted NADH dehydrogenase 2; PMID:;
     gi|7427765|pir||T01091 NADH2 dehydrogenase (ubiquinon; PMID:;
     gi|7269018|emb|CAB80751.1| predicted NADH dehydrogenase 2; PMID:;
19.          19          174          27          88.07          1.0e-51
     gi|30249733|ref|NP_841803.1| Respiratory-chain NADH dehydro; PMID:12700255;
     gi|30180770|emb|CAD85684.1| Respiratory-chain NADH dehydro; PMID:12700255;
20.          19          175          27          88.64          2.0e-51
     gi|17429077|emb|CAD15765.1| probable nadh dehydrogenaseI(c; PMID:11823852;
     gi|17546777|ref|NP_520179.1| PROBABLE NADH DEHYDROGENASE I ; PMID:11823852;
21.          19          175          29          88.64          5.0e-51
     gi|22977696|ref|ZP_00023483.1| hypothetical protein [Ralstoni; PMID:;
22.          15          175          28          90.91          5.0e-51
     gi|150603|gb|AAA25588.1| NADH dehydrogenase ; PMID:1909571;
     gi|266652|sp|P29914|NQO2_PARDE NADH-quinone oxidoreductase ch; PMID:1909571;
     gi|94692|pir||A40296 NADH2 dehydrogenase (ubiquinon; PMID:1909571,1637825,7957917;
23.          7          175          23          95.45          1.0e-50
     gi|21355353|ref|NP_648965.1| CG6485-PA [Drosophila melanoga; PMID:10731132;
     gi|7294004|gb|AAF49361.1| CG6485-PA [Drosophila melanoga; PMID:10731132;
     gi|19528027|gb|AAL90128.1| AT21479p [Drosophila melanogas; PMID:;
24.          15          175          28          90.91          2.0e-50
     gi|3282563|gb|AAC24989.1| NUOE [Rhodobacter capsulatus] ; PMID:;
     gi|1938238|emb|CAA71230.1| complex I 24kDa subunit [Rhodo; PMID:9108316;
     gi|2182078|emb|CAA71011.1| NADH:ubiquinone oxidoreductase; PMID:9219542;
25.          19          172          28          86.93          6.0e-50
     gi|22982550|ref|ZP_00027799.1| hypothetical protein [Burkhold; PMID:;
26.          6          175          26          96.02          6.0e-50
     gi|8473988|sp|P56909|NUE1_RHIME NADH-quinone oxidoreductase ch; PMID:11481430;
     gi|15965022|ref|NP_385375.1| NADH DEHYDROGENASE I CHAIN E P; PMID:11481430,11474104;
     gi|15074201|emb|CAC45848.1| NADH DEHYDROGENASE I CHAIN E P; PMID:11481430;
27.          6          175          26          96.02          7.0e-50
     gi|5650739|emb|CAB51625.1| nuoE1 [Sinorhizobium meliloti]; PMID:;
28.          19          173          24          87.50          1.0e-49
     gi|7225467|gb|AAF40699.1| NADH dehydrogenase I, E subuni; PMID:10710307;
     gi|15676169|ref|NP_273301.1| NADH dehydrogenase I, E subuni; PMID:10710307;
     gi|11253217|pir||C81222 NADH dehydrogenase I, E chain ; PMID:10710307;
29.          6          175          26          96.02          2.0e-49
     gi|22964873|ref|ZP_00012479.1| hypothetical protein [Rhodopse; PMID:;
30.          19          173          23          87.50          2.0e-49
     gi|11253216|pir||C81992 NADH2 dehydrogenase (ubiquinon; PMID:10761919;
     gi|7378793|emb|CAB83335.1| NADH dehydrogenase I chain E [; PMID:10761919;
     gi|15793049|ref|NP_282871.1| NADH dehydrogenase I chain E [; PMID:10761919;
31.          6          175          27          96.02          3.0e-49
     gi|27353179|dbj|BAC50179.1| NADH ubiquinone oxidoreductase; PMID:12597275,12597279;
     gi|27380025|ref|NP_771554.1| NADH ubiquinone oxidoreductase; PMID:12597275;
32.          11          173          31          92.05          4.0e-48
     gi|480581|pir||S37062 NADH dehydrogenase (ubiquinone; PMID:7690854;
     gi|397902|emb|CAA48364.1| NADH dehydrogenase I, subunit ; PMID:7690854;
33.          11          175          25          93.18          5.0e-48
     gi|16126193|ref|NP_420757.1| NADH dehydrogenase I, E subuni; PMID:11259647;
     gi|13423409|gb|AAK23925.1| NADH dehydrogenase I, E subuni; PMID:11259647;
     gi|25285033|pir||A87491 NADH dehydrogenase I, E subuni; PMID:11259647;
34.          15          175          25          90.91          5.0e-48
     gi|22957141|ref|ZP_00004857.1| hypothetical protein [Rhodobac; PMID:;
35.          13          172          31          90.34          9.0e-48
     gi|23105374|ref|ZP_00091830.1| hypothetical protein [Azotobac; PMID:;
36.          24          175          51          85.80          1.0e-47
     gi|23021201|ref|ZP_00060885.1| hypothetical protein [Clostrid; PMID:;
37.          10          170          27          90.91          2.0e-47
     gi|23135656|ref|ZP_00117395.1| hypothetical protein [Cytophag; PMID:;
38.          11          172          27          91.48          2.0e-47
     gi|22125528|ref|NP_668951.1| NADH dehydrogenase I chain E [; PMID:12142430;
     gi|21958427|gb|AAM85202.1|AE013766_5 NADH dehydrogenase I chain E [; PMID:12142430;
39.          17          172          32          88.07          3.0e-47
     gi|24213591|ref|NP_711072.1| NADH dehydrogenase I chain E [; PMID:;
     gi|24194383|gb|AAN48090.1|AE011273_8 NADH dehydrogenase I chain E [; PMID:12712204;
40.          14          175          27          91.48          4.0e-47
     gi|14022145|dbj|BAB48755.1| NADH-ubiquinone dehydrogenase ; PMID:11214968;
     gi|13471403|ref|NP_102969.1| NADH-ubiquinone dehydrogenase ; PMID:11214968;
41.          4          173          23          96.02          9.0e-47
     gi|21231956|ref|NP_637873.1| NADH-ubiquinone oxidoreductase; PMID:12024217;
     gi|21113687|gb|AAM41797.1| NADH-ubiquinone oxidoreductase; PMID:12024217;
42.          13          172          31          90.34          1.0e-46
     gi|23058637|ref|ZP_00083678.1| hypothetical protein [Pseudomo; PMID:;
43.          2          173          25          97.16          1.0e-46
     gi|9105132|gb|AAF83120.1|AE003884_5 NADH-ubiquinone oxidoreductase; PMID:10910347;
     gi|28056245|gb|AAO28138.1| NADH-ubiquinone oxidoreductase; PMID:12533478;
     gi|22997662|ref|ZP_00041890.1| hypothetical protein [Xylella ; PMID:;
     gi|15836912|ref|NP_297600.1| NADH-ubiquinone oxidoreductase; PMID:10910347;
     gi|28198175|ref|NP_778489.1| NADH-ubiquinone oxidoreductase; PMID:12533478;
     gi|11362282|pir||G82821 NADH-ubiquinone oxidoreductase; PMID:;
44.          13          173          32          90.91          2.0e-46
     gi|28870532|ref|NP_793151.1| NADH dehydrogenase I, E subuni; PMID:12928499;
     gi|28853780|gb|AAO56846.1| NADH dehydrogenase I, E subuni; PMID:12928499;
45.          24          173          30          84.66          2.0e-46
     gi|5650748|emb|CAB51633.1| putative NADH-ubiquinone oxido; PMID:;
46.          13          173          31          90.91          3.0e-46
     gi|23473016|ref|ZP_00128335.1| hypothetical protein [Pseudomo; PMID:;
47.          4          173          23          96.02          3.0e-46
     gi|21108981|gb|AAM37546.1| NADH-ubiquinone oxidoreductase; PMID:12024217;
     gi|21243428|ref|NP_643010.1| NADH-ubiquinone oxidoreductase; PMID:12024217;
48.          2          173          25          97.16          6.0e-46
     gi|22995114|ref|ZP_00039596.1| hypothetical protein [Xylella ; PMID:;
49.          10          173          31          92.61          1.0e-45
     gi|11133961|sp|P57255|NUOE_BUCAI NADH-quinone oxidoreductase ch; PMID:10993077;
     gi|25285035|pir||C84948 NADH2 dehydrogenase (ubiquinon; PMID:10993077;
     gi|15616777|ref|NP_239989.1| NADH dehydrogenase I chain E [; PMID:10993077;
     gi|10038840|dbj|BAB12875.1| NADH dehydrogenase I chain E [; PMID:10993077;
50.          25          175          29          85.23          4.0e-45
     gi|23018405|ref|ZP_00058122.1| hypothetical protein [Thermobi; PMID:;
51.          18          172          45          87.50          5.0e-45
     gi|14250933|emb|CAC39229.1| HymA protein [Eubacterium acid; PMID:12560990;
52.          25          175          31          85.23          6.0e-45
     gi|21222949|ref|NP_628728.1| NuoE, NADH dehydrogenase subun; PMID:12000953,8843436;
     gi|7480288|pir||T34620 NADH2 dehydrogenase (ubiquinon; PMID:;
     gi|5042273|emb|CAB44527.1| NuoE, NADH dehydrogenase subun; PMID:12000953;
53.          16          175          27          90.34          7.0e-45
     gi|2499324|sp|Q56221|NQO2_THETH NADH-quinone oxidoreductase ch; PMID:9020134;
     gi|7520708|pir||T11902 NADH2 dehydrogenase (ubiquinon; PMID:;
     gi|1279865|gb|AAA97942.1| NADH dehydrogenase I, subunit ; PMID:;
54.          10          176          52          94.32          2.0e-44
     gi|88946050|ref|ZP_01149147.1| NADH dehydrogenase I chain E [; PMID:;
55.          27          175          28          84.09          4.0e-44
     gi|29831384|ref|NP_826018.1| putative NADH dehydrogenase ch; PMID:11572948;
     gi|29608499|dbj|BAC72553.1| putative NADH dehydrogenase ch; PMID:11572948,12692562;
56.          10          173          40          92.61          1.0e-43
     gi|23113164|ref|ZP_00098565.1| hypothetical protein [Desulfit; PMID:;
57.          22          172          31          85.23          2.0e-42
     gi|22974813|ref|ZP_00020949.1| hypothetical protein [Chlorofl; PMID:;
58.          11          173          28          92.05          2.0e-42
     gi|21672440|ref|NP_660507.1| ATP synthase subunit E [Buchne; PMID:12089438;
     gi|21623052|gb|AAM67718.1| NADH dehydrogenase I chain E [; PMID:12089438;
     gi|25008858|sp|Q8K9Y4|NUOE_BUCAP NADH-quinone oxidoreductase ch; PMID:12089438;
59.          24          175          24          85.80          7.0e-42
     gi|22981368|ref|ZP_00026885.1| hypothetical protein [Ralstoni; PMID:;
60.          19          173          23          87.50          1.0e-41
     gi|34102253|gb|AAQ58619.1| NADH-ubiquinone oxidoreductase; PMID:;
61.          20          175          45          88.07          2.0e-41
     gi|22652020|gb|AAN03564.1|AF381045_1 hydrogenase subunit E [Synecho; PMID:;
62.          16          175          51          90.34          3.0e-41
     gi|67916529|ref|ZP_00510236.1| NADH dehydrogenase (ubiquinone; PMID:;
63.          20          154          45          76.14          8.0e-41
     gi|3947770|emb|CAA73872.1| hoxE [Synechococcus sp. PCC 63; PMID:9541559;
64.          17          172          28          88.07          1.0e-40
     gi|33504287|emb|CAD83179.1| NADH dehydrogenase I chain E [; PMID:12886019;
     gi|33519941|ref|NP_878773.1| NADH dehydrogenase I chain E [; PMID:12886019;
65.          18          173          31          88.07          2.0e-40
     gi|22959072|ref|ZP_00006730.1| hypothetical protein [Rhodobac; PMID:;
66.          25          174          29          84.66          2.0e-40
     gi|3724143|emb|CAA11233.1| NAD-dependent formate dehydrog; PMID:9756865;
67.          25          175          23          85.23          4.0e-40
     gi|123467|sp|P22317|HOXF_ALCEU NAD-reducing hydrogenase hoxS ; PMID:2188945,2496982;
     gi|141947|gb|AAC06140.1| NAD-reducing hydrogenase [Rals; PMID:2188945,1377901;
     gi|95476|pir||A35385 hydrogen dehydrogenase (EC 1.1; PMID:2496982,2188945;
     gi|32527091|gb|AAP85841.1| NAD-reducing hydrogenase diaph; PMID:;
68.          20          172          50          86.36          5.0e-40
     gi|82499406|ref|ZP_00884852.1| NADH:ubiquinone oxidoreductase; PMID:;
69.          5          176          37          97.16          5.0e-40
     gi|23055809|ref|ZP_00081889.1| hypothetical protein [Geobacte; PMID:;
70.          20          172          51          86.36          2.0e-39
     gi|77919442|ref|YP_357257.1| NADH:ubiquinone oxidoreductase; PMID:;
71.          43          174          40          74.43          2.0e-39
     gi|23055989|ref|ZP_00082055.1| hypothetical protein [Geobacte; PMID:;
72.          25          175          24          85.23          4.0e-39
     gi|1617570|gb|AAB57889.1| NAD-reducing hydrogenase alpha; PMID:9141690;
73.          20          172          49          86.36          5.0e-39
     gi|466363|gb|AAA87054.1| potential NAD-reducing hydroge; PMID:7751270;
     gi|2126446|pir||A57150 NADP-reducing hydrogenase (EC ; PMID:7751270;
74.          16          173          50          89.20          3.0e-38
     gi|90572927|ref|ZP_01229448.1| hypothetical protein CdifQ_020; PMID:;
75.          37          174          32          77.84          3.0e-38
     gi|15890287|ref|NP_355959.1| AGR_L_350p [Agrobacterium tume; PMID:11743194;
     gi|15158484|gb|AAK88744.1| AGR_L_350p [Agrobacterium tume; PMID:;
     gi|25520759|pir||F98152 NAD-dependent formate dehydrog; PMID:11743194;
76.          37          174          32          77.84          9.0e-38
     gi|17938395|ref|NP_535184.1| NADH dehydrogenase I chain E [; PMID:11743193;
     gi|17743209|gb|AAL45500.1| NADH dehydrogenase I chain E [; PMID:11743193;
     gi|25524515|pir||AF3135 NADH dehydrogenase I chain E n; PMID:11743193;
77.          22          172          50          85.23          1.0e-37
     gi|77919201|ref|YP_357016.1| NADH:ubiquinone oxidoreductase; PMID:;
78.          22          172          49          85.23          2.0e-37
     gi|77919235|ref|YP_357050.1| NADH:ubiquinone oxidoreductase; PMID:;
79.          20          173          0          86.93          3.0e-36
     gi|77996687|gb|ABB15586.1| Fe-hydrogenase, gamma subunit ; PMID:;
80.          20          173          47          86.93          7.0e-36
     gi|77686402|ref|ZP_00801754.1| NADH dehydrogenase (ubiquinone; PMID:;
81.          22          172          49          85.23          1.0e-35
     gi|71836215|ref|ZP_00675984.1| NADH dehydrogenase (ubiquinone; PMID:;
82.          20          172          0          86.36          5.0e-35
     gi|98663257|dbj|GAA00016.1| unnamed protein product [Pelot; PMID:;
83.          17          173          43          88.64          2.0e-34
     gi|76795777|ref|ZP_00778148.1| NADH dehydrogenase (ubiquinone; PMID:;
84.          20          154          0          76.14          9.0e-34
     gi|20807371|ref|NP_622542.1| NADH:ubiquinone oxidoreductase; PMID:11997336;
     gi|20515890|gb|AAM24146.1| NADH:ubiquinone oxidoreductase; PMID:11997336;
85.          23          174          46          85.80          1.0e-33
     gi|51858031|dbj|BAD42189.1| putative iron hydrogenase smal; PMID:;
86.          19          174          44          88.07          1.0e-33
     gi|98661928|dbj|GAA01125.1| unnamed protein product [Pelot; PMID:;
87.          16          171          44          88.07          1.0e-33
     gi|29345533|ref|NP_809036.1| NADH-ubiquinone oxidoreductase; PMID:12663928;
     gi|29337425|gb|AAO75230.1| NADH-ubiquinone oxidoreductase; PMID:12663928;
88.          20          172          44          86.36          2.0e-33
     gi|77685015|ref|ZP_00800428.1| NADH dehydrogenase (ubiquinone; PMID:;
89.          18          152          50          76.14          2.0e-32
     gi|1653182|dbj|BAA18098.1| potential NAD-reducing hydroge; PMID:8590279,8905231;
     gi|16330690|ref|NP_441418.1| ATP synthase subunit E [Synech; PMID:8905231,8590279;
     gi|7427770|pir||S75537 NADH2 dehydrogenase (ubiquinon; PMID:8905231;
90.          13          172          42          90.34          2.0e-32
     gi|77918522|ref|YP_356337.1| NADH:ubiquinone oxidoreductase; PMID:;
91.          21          173          46          86.36          4.0e-32
     gi|77918445|ref|YP_356260.1| NADH dehydrogenase I, E subuni; PMID:;
92.          35          176          45          80.11          4.0e-32
     gi|85857932|ref|YP_460134.1| NADH:ubiquinone oxidoreductase; PMID:;
93.          20          174          43          87.50          4.0e-32
     gi|77685387|ref|ZP_00800788.1| NADH dehydrogenase (ubiquinone; PMID:;
94.          22          173          43          85.80          8.0e-32
     gi|71546927|ref|ZP_00667670.1| NADH dehydrogenase (ubiquinone; PMID:;
95.          5          173          43          95.45          8.0e-32
     gi|83630909|gb|ABC26906.1| HoxE [Arthrospira platensis FA; PMID:;
96.          35          175          45          79.55          1.0e-31
     gi|82499675|ref|ZP_00885114.1| NADH dehydrogenase I chain E [; PMID:;
97.          18          175          19          89.20          1.0e-31
     gi|19115849|ref|NP_594937.1| (NC_003424) probable nadh ubiq; PMID:11859360;
     gi|3183091|sp|O13691|NUHM_SCHPO Probable NADH-ubiquinone oxido; PMID:11859360;
     gi|2330670|emb|CAB11191.1| (Z98595) probable nadh ubiquin; PMID:11859360;
     gi|7492748|pir||T37540 probable nadh ubiquinone dehyd; PMID:;
98.          20          175          43          88.07          4.0e-31
     gi|2865515|gb|AAC02684.1| Fe-hydrogenase gamma subunit [; PMID:10482784;
99.          20          175          43          88.07          4.0e-31
     gi|4981988|gb|AAD36494.1| Fe-hydrogenase, subunit gamma ; PMID:10360571;
     gi|7431970|pir||E72256 Fe-hydrogenase, subunit gamma ; PMID:10360571;
     gi|15644175|ref|NP_229224.1| Fe-hydrogenase, subunit gamma ; PMID:10360571;
100.          10          154          0          81.82          5.0e-31
     gi|98660580|dbj|GAA02161.1| unnamed protein product [Pelot; PMID:;
101.          40          175          46          76.70          1.0e-30
     gi|81299089|ref|YP_399297.1| NADH:ubiquinone oxidoreductase; PMID:;
102.          18          171          0          86.93          1.0e-30
     gi|77993212|dbj|BAE46792.1| bidirectional hydrogenase E su; PMID:;
103.          35          173          46          78.41          2.0e-30
     gi|57159873|dbj|BAD85803.1| NADH:ubiquinone oxidoreductase; PMID:;
104.          10          173          42          92.61          2.0e-30
     gi|68207724|ref|ZP_00559875.1| NADH dehydrogenase (ubiquinone; PMID:;
105.          35          173          0          78.41          2.0e-30
     gi|88944751|ref|ZP_01147975.1| NADH dehydrogenase I, E subuni; PMID:;
106.          10          173          42          92.61          4.0e-30
     gi|89896717|ref|YP_520204.1| NADH dehydrogenase I chain E [; PMID:;
107.          18          171          44          86.93          8.0e-30
     gi|25285040|pir||AE1900 NADH dehydrogenase I chain E a; PMID:11759840;
     gi|17228246|ref|NP_484794.1| NADH dehydrogenase I chain E [; PMID:11759840;
     gi|17130096|dbj|BAB72708.1| NADH dehydrogenase I chain E [; PMID:11759840;
108.          35          173          46          78.41          2.0e-29
     gi|88945914|ref|ZP_01149053.1| NADH dehydrogenase I chain E [; PMID:;
109.          42          172          45          73.86          2.0e-29
     gi|91202658|emb|CAJ72297.1| similar to nuoE subunit of the; PMID:;
110.          42          172          45          73.86          2.0e-29
     gi|91200212|emb|CAJ73256.1| strongly similar to to proton-; PMID:;
111.          41          175          43          76.14          2.0e-29
     gi|77684580|ref|ZP_00800006.1| NADH dehydrogenase (ubiquinone; PMID:;
112.          7          173          39          94.32          4.0e-29
     gi|91203918|emb|CAJ71571.1| similar to to proton-transloca; PMID:;
113.          26          174          19          84.09          4.0e-29
     gi|7522122|pir||T18557 probable hydrogenase (EC 1.18.; PMID:9859986;
     gi|4034791|emb|CAA76373.1| hydrogenase [Nyctotherus ovali; PMID:9859986;
114.          23          176          0          86.93          4.0e-29
     gi|62632269|gb|AAX89148.1| HoxE [Allochromatium vinosum] ; PMID:;
115.          19          171          43          86.36          8.0e-29
     gi|67941662|ref|ZP_00533727.1| NADH dehydrogenase (ubiquinone; PMID:;
116.          17          172          42          88.07          1.0e-28
     gi|88933089|ref|ZP_01138770.1| NADH dehydrogenase (ubiquinone; PMID:;
117.          17          172          42          88.07          1.0e-28
     gi|73660381|emb|CAI82988.1| hydrogenase subunit HymA [Deha; PMID:;
118.          15          171          41          88.64          2.0e-28
     gi|88945911|ref|ZP_01149050.1| NADH dehydrogenase I chain E [; PMID:;
119.          17          169          41          86.36          2.0e-28
     gi|57224955|gb|AAW40012.1| [Fe] hydrogenase, HymA subunit; PMID:;
120.          24          172          0          84.09          4.0e-28
     gi|71492467|gb|EAO24772.1| NADH dehydrogenase (ubiquinone; PMID:;
121.          24          175          47          85.80          5.0e-28
     gi|76258513|ref|ZP_00766168.1| NADH dehydrogenase (ubiquinone; PMID:;
122.          18          163          44          82.39          5.0e-28
     gi|71546724|ref|ZP_00667490.1| NADH dehydrogenase (ubiquinone; PMID:;
123.          35          151          29          65.91          6.0e-28
     gi|4007678|emb|CAA22364.1| (AL034443) putative respirator; PMID:12000953;
     gi|21224862|ref|NP_630641.1| (NC_003888) putative respirato; PMID:12000953,8843436;
     gi|7481266|pir||T35002 probable respiratory chain oxi; PMID:;
124.          39          175          45          77.27          7.0e-28
     gi|91203806|emb|CAJ71459.1| similar to NADH:ubiquinone oxi; PMID:;
125.          23          163          43          79.55          7.0e-28
     gi|39984708|gb|AAR36094.1| NAD-reducing hydrogenase, puta; PMID:;
126.          25          172          42          83.52          7.0e-28
     gi|57224806|gb|AAW39863.1| hydrogenase subunit HymA, puta; PMID:;
127.          24          173          40          84.66          7.0e-28
     gi|85860697|ref|YP_462899.1| NADH-quinone oxidoreductase ch; PMID:;
128.          33          169          44          77.27          1.0e-27
     gi|73660240|emb|CAI82847.1| putative [Fe] hydrogenase, Hym; PMID:;
129.          24          173          0          84.66          4.0e-27
     gi|85860878|ref|YP_463080.1| NADH-quinone oxidoreductase ch; PMID:;
130.          20          153          43          75.57          5.0e-27
     gi|93453746|gb|EAT04122.1| NADH dehydrogenase (ubiquinone; PMID:;
131.          18          153          44          76.70          6.0e-27
     gi|67932217|ref|ZP_00525365.1| NADH dehydrogenase (ubiquinone; PMID:;
132.          23          176          42          86.93          6.0e-27
     gi|67875537|ref|ZP_00504833.1| NADH dehydrogenase (ubiquinone; PMID:;
133.          6          152          37          82.95          4.0e-26
     gi|50877097|emb|CAG36937.1| probable NADH dehydrogenase (u; PMID:;
134.          18          176          36          89.77          4.0e-26
     gi|71492496|gb|EAO24800.1| NADH dehydrogenase (ubiquinone; PMID:;
135.          33          153          46          68.18          5.0e-26
     gi|93449983|gb|EAT01387.1| NADH dehydrogenase (ubiquinone; PMID:;
136.          35          170          42          76.70          5.0e-26
     gi|71546557|ref|ZP_00667343.1| NADH dehydrogenase (ubiquinone; PMID:;
137.          42          174          42          75.00          7.0e-26
     gi|88933974|ref|ZP_01139618.1| NADH dehydrogenase I, E subuni; PMID:;
138.          14          175          39          91.48          7.0e-26
     gi|82744629|ref|ZP_00907144.1| NADH dehydrogenase I chain E [; PMID:;
139.          42          174          42          75.00          1.0e-25
     gi|39982214|gb|AAR33675.1| NADH dehydrogenase I, E subuni; PMID:;
140.          42          174          0          75.00          1.0e-25
     gi|67940619|ref|ZP_00533000.1| NADH dehydrogenase (ubiquinone; PMID:;
141.          27          175          38          84.09          3.0e-25
     gi|91068751|gb|ABE04473.1| NADH dehydrogenase I chain E [; PMID:;
142.          35          170          0          76.70          2.0e-24
     gi|15606025|ref|NP_213402.1| NADH dehydrogenase I chain E [; PMID:9537320;
     gi|6647652|sp|O66842|NUOE_AQUAE NADH-quinone oxidoreductase ch; PMID:9537320;
     gi|2983200|gb|AAC06799.1| NADH dehydrogenase I chain E [; PMID:9537320;
     gi|7427768|pir||F70351 NADH2 dehydrogenase (ubiquinon; PMID:9537320;
143.          23          171          38          84.09          6.0e-24
     gi|71836643|ref|ZP_00676411.1| NADH dehydrogenase (ubiquinone; PMID:;
144.          34          171          39          77.84          8.0e-24
     gi|2622669|gb|AAB86022.1| NADP-reducing hydrogenase, sub; PMID:9371463;
     gi|7427769|pir||E69073 NADP-reducing hydrogenase (EC ; PMID:9371463;
     gi|15679544|ref|NP_276661.1| NADP-reducing hydrogenase, sub; PMID:9371463;
145.          1          175          33          98.86          1.0e-23
     gi|88658623|ref|YP_507425.1| NADH dehydrogenase I, E subuni; PMID:;
146.          17          174          0          89.20          3.0e-23
     gi|89210551|ref|ZP_01188939.1| NADH dehydrogenase (ubiquinone; PMID:;
147.          33          172          37          78.98          4.0e-23
     gi|50875573|emb|CAG35413.1| probable NADH-ubiquinone oxido; PMID:;
148.          16          171          36          88.07          4.0e-23
     gi|58419167|gb|AAW71182.1| NADH:ubiquinone oxidoreductase; PMID:;
149.          20          175          33          88.07          4.0e-23
     gi|95926779|ref|ZP_01309553.1| hypothetical protein CburR_010; PMID:;
150.          20          175          33          88.07          4.0e-23
     gi|94490936|ref|ZP_01298159.1| hypothetical protein CburD_010; PMID:;
151.          20          175          33          88.07          5.0e-23
     gi|29654735|ref|NP_820427.1| NADH dehydrogenase I, E subuni; PMID:12704232;
     gi|29542003|gb|AAO90941.1| NADH dehydrogenase I, E subuni; PMID:12704232;
152.          17          169          34          86.36          9.0e-23
     gi|45658579|ref|YP_002665.1| NADH dehydrogenase I E subunit; PMID:;
153.          33          173          32          79.55          1.0e-22
     gi|71492625|gb|EAO24928.1| NADH dehydrogenase (ubiquinone; PMID:;
154.          38          173          38          76.70          2.0e-22
     gi|91079340|ref|XP_969318.1| PREDICTED: similar to CG5703-P; PMID:;
155.          25          171          36          82.95          2.0e-22
     gi|88812972|ref|ZP_01128215.1| NADH dehydrogenase (ubiquinone; PMID:;
156.          27          175          35          84.09          2.0e-22
     gi|52698788|ref|ZP_00340196.1| COG1905: NADH:ubiquinone oxido; PMID:;
157.          35          169          0          76.14          2.0e-22
     gi|87303136|ref|ZP_01085934.1| NADH dehydrogenase (ubiquinone; PMID:;
158.          32          174          39          80.68          3.0e-22
     gi|46399838|emb|CAF23287.1| putative NADH-ubiquinone oxido; PMID:;
159.          21          173          35          86.36          4.0e-22
     gi|62857879|ref|NP_001017166.1| hypothetical protein LOC549920; PMID:;
160.          21          171          35          85.23          6.0e-22
     gi|42410316|gb|AAS14426.1| NADH dehydrogenase I, E subuni; PMID:;
161.          21          171          35          85.23          6.0e-22
     gi|58699915|ref|ZP_00374508.1| NADH dehydrogenase I, E subuni; PMID:;
162.          38          174          37          77.27          1.0e-21
     gi|94468524|gb|ABF18111.1| NADH:ubiquinone oxidoreductase; PMID:;
163.          21          173          35          86.36          1.0e-21
     gi|73962198|ref|XP_537328.2| PREDICTED: similar to NADH deh; PMID:;
164.          7          175          0          95.45          1.0e-21
     gi|67938722|ref|ZP_00531243.1| NADH dehydrogenase (ubiquinone; PMID:;
165.          27          175          36          84.09          2.0e-21
     gi|15892404|ref|NP_360118.1| NADH dehydrogenase I chain E [; PMID:11557893,11030655;
     gi|15619555|gb|AAL03019.1| NADH dehydrogenase I chain E [; PMID:11030655,11557893;
     gi|20139044|sp|Q92ID9|NUOE_RICCN NADH-quinone oxidoreductase ch; PMID:11557893;
     gi|25285037|pir||A97760 NADH2 dehydrogenase (ubiquinon; PMID:11557893;
166.          21          173          35          86.36          2.0e-21
     gi|74268334|gb|AAI02402.1| NADH dehydrogenase flavoprotei; PMID:;
167.          21          173          35          86.36          2.0e-21
     gi|1364245|emb|CAA32848.1| NADH dehydrogenase 24 kDa subu; PMID:2598272;
168.          27          175          35          84.09          2.0e-21
     gi|102191935|ref|ZP_01347747.1| hypothetical protein RcanM_010; PMID:;
169.          27          175          0          84.09          2.0e-21
     gi|66534614|ref|XP_393287.2| PREDICTED: similar to CG5703-P; PMID:;
170.          35          174          37          78.98          4.0e-21
     gi|57225192|gb|AAW40249.1| [Fe] hydrogenase, HymA subunit; PMID:;
171.          35          174          37          78.98          4.0e-21
     gi|73660004|emb|CAI82611.1| putative [Fe] hydrogenase, Hym; PMID:;
172.          27          175          34          84.09          4.0e-21
     gi|7427766|pir||C71692 NADH2 dehydrogenase (ubiquinon; PMID:9823893;
     gi|15604221|ref|NP_220737.1| NADH DEHYDROGENASE I CHAIN E (; PMID:9823893;
     gi|3860913|emb|CAA14813.1| NADH DEHYDROGENASE I CHAIN E (; PMID:9823893;
     gi|6647681|sp|Q9ZDH5|NUOE_RICPR NADH-quinone oxidoreductase ch; PMID:9823893;
173.          21          173          34          86.36          4.0e-21
     gi|20178012|sp|Q9D6J6|NUHM_MOUSE NADH-ubiquinone oxidoreductase; PMID:11217851;
     gi|12850902|dbj|BAB28888.1| unnamed protein product [Mus m; PMID:10349636,11042159,11076861,11217851;
174.          38          175          36          77.84          5.0e-21
     gi|27820078|gb|AAL68189.2| GH08937p [Drosophila melanogas; PMID:;
     gi|7293367|gb|AAF48745.1| CG5703-PA [Drosophila melanoga; PMID:10731132;
     gi|18859877|ref|NP_573228.1| CG5703-PA [Drosophila melanoga; PMID:10731132;
175.          38          173          37          76.70          6.0e-21
     gi|39590534|emb|CAE66274.1| Hypothetical protein CBG11518 ; PMID:;
176.          21          173          0          86.36          6.0e-21
     gi|7504066|pir||T22573 hypothetical protein F53F4.10 ; PMID:;
     gi|6647669|sp|Q20719|NUHM_CAEEL NADH-ubiquinone oxidoreductase; PMID:;
     gi|17561328|ref|NP_506376.1| F53F4.10 [Caenorhabditis elega; PMID:;
     gi|3877525|emb|CAB01203.1| Hypothetical protein F53F4.10 ; PMID:9851916;
177.          38          174          36          77.27          8.0e-21
     gi|55246338|gb|EAA03768.2| ENSANGP00000019442 [Anopheles ; PMID:;
     gi|31198141|ref|XP_308018.1| ENSANGP00000019442 [Anopheles ; PMID:;
178.          27          175          36          84.09          8.0e-21
     gi|42453619|ref|ZP_00153526.1| COG1905: NADH:ubiquinone oxido; PMID:;
179.          37          175          37          78.41          1.0e-20
     gi|34580594|ref|ZP_00142074.1| NADH dehydrogenase I chain E [; PMID:;
180.          20          173          36          86.93          1.0e-20
     gi|47223039|emb|CAG07126.1| unnamed protein product [Tetra; PMID:;
181.          21          173          34          86.36          1.0e-20
     gi|10835025|ref|NP_066552.1| NADH dehydrogenase (ubiquinone; PMID:9570948,7488192,7607668,2500970;
     gi|188852|gb|AAA75390.1| NADH-ubiquinone reductase ; PMID:2500970;
     gi|88230|pir||A30113 NADH2 dehydrogenase (ubiquinon; PMID:2500970;
182.          21          173          34          86.36          1.0e-20
     gi|12804451|gb|AAH01632.1|AAH01632 Similar to NADH dehydrogenase ; PMID:;
     gi|20455499|sp|P19404|NUHM_HUMAN NADH-ubiquinone oxidoreductase; PMID:2500970,12477932;
     gi|17028359|gb|AAH17487.1| NADH dehydrogenase (ubiquinone; PMID:;
183.          20          171          33          85.80          1.0e-20
     gi|68244762|gb|EAN26915.1| NADH dehydrogenase (ubiquinone; PMID:;
184.          21          173          33          86.36          1.0e-20
     gi|51092268|ref|NP_112326.1| NADH dehydrogenase (ubiquinone; PMID:;
185.          21          173          33          86.36          1.0e-20
     gi|92528|pir||A31868 NADH2 dehydrogenase (ubiquinon; PMID:2974699;
     gi|205628|gb|AAA41669.1| 24-kDa mitochondrial NADH dehy; PMID:2974699;
     gi|128867|sp|P19234|NUHM_RAT NADH-ubiquinone oxidoreductase; PMID:2974699;
186.          21          173          32          86.36          1.0e-20
     gi|50549567|ref|XP_502254.1| YlNUHM [Yarrowia lipolytica] s; PMID:;
187.          23          173          0          85.23          1.0e-20
     gi|54643109|gb|EAL31853.1| GA19069-PA [Drosophila pseudoo; PMID:;
188.          21          173          0          86.36          1.0e-20
     gi|55647061|ref|XP_512027.1| PREDICTED: similar to NADH deh; PMID:;
189.          21          173          33          86.36          2.0e-20
     gi|83360446|gb|EAP63973.1| NAD-dependent formate dehydrog; PMID:;
190.          20          173          32          86.93          2.0e-20
     gi|88608494|ref|YP_506514.1| NADH dehydrogenase I, E subuni; PMID:;
191.          8          173          30          93.75          2.0e-20
     gi|74317164|ref|YP_314904.1| ATP synthase subunit E [Thioba; PMID:;
192.          42          174          0          75.00          2.0e-20
     gi|50800491|ref|XP_424129.1| PREDICTED: similar to NADH2 de; PMID:;
193.          36          174          35          78.41          4.0e-20
     gi|15966764|ref|NP_387117.1| PUTATIVE NAD-DEPENDENT FORMATE; PMID:11481430,11474104;
     gi|15076036|emb|CAC47590.1| PUTATIVE NAD-DEPENDENT FORMATE; PMID:11481430;
194.          24          176          32          86.36          4.0e-20
     gi|68472685|ref|XP_719661.1| putative mitochondrial complex; PMID:;
195.          27          172          0          82.39          4.0e-20
     gi|85722016|gb|ABC76959.1| NADH-quinone oxidoreductase ch; PMID:17442750;
     gi|85858925|ref|YP_461127.1| NADH-quinone oxidoreductase ch; PMID:;
196.          31          172          35          80.11          5.0e-20
     gi|67155890|ref|ZP_00417517.1| NADH dehydrogenase (ubiquinone; PMID:;
197.          20          173          30          86.93          5.0e-20
     gi|57225453|gb|AAW40510.1| [Fe] hydrogenase, HymA subunit; PMID:;
198.          33          173          0          79.55          7.0e-20
     gi|73659813|emb|CAI82420.1| putative [Fe] hydrogenase, Hym; PMID:;
199.          42          174          33          75.00          9.0e-20
     gi|86359440|ref|YP_471332.1| formate dehydrogenase, gamma s; PMID:;
200.          29          174          33          82.39          9.0e-20
     gi|94968340|ref|YP_590388.1| NADH-quinone oxidoreductase, E; PMID:;
201.          12          173          33          91.48          9.0e-20
     gi|86160616|ref|YP_467401.1| NADH-quinone oxidoreductase, E; PMID:;
202.          24          173          30          84.66          9.0e-20
     gi|53752553|emb|CAH13985.1| NADH dehydrogenase I chain E [; PMID:;
203.          31          173          33          80.68          1.0e-19
     gi|15832423|ref|NP_311196.1| ATP synthase subunit E [Escher; PMID:11258796,11111050,11108008,10734605;
     gi|13362639|dbj|BAB36592.1| NADH dehydrogenase I chain E [; PMID:10734605,11108008,11111050,11258796;
     gi|12516635|gb|AAG57414.1|AE005460_8 NADH dehydrogenase I chain E [; PMID:11206551;
     gi|15802832|ref|NP_288859.1| NADH dehydrogenase I chain E [; PMID:11206551;
     gi|25285032|pir||B85869 NADH dehydrogenase I chain E [; PMID:11206551;
     gi|25285031|pir||A91025 NADH dehydrogenase I chain E E; PMID:11258796;
204.          21          163          0          80.68          1.0e-19
     gi|71549642|ref|ZP_00669833.1| NADH dehydrogenase (ubiquinone; PMID:;
205.          20          169          34          84.66          2.0e-19
     gi|94493701|ref|ZP_01300904.1| hypothetical protein Rgryl_010; PMID:;
206.          35          173          33          78.41          2.0e-19
     gi|75230334|ref|ZP_00716824.1| COG1905: NADH:ubiquinone oxido; PMID:;
207.          31          173          33          80.68          2.0e-19
     gi|16765652|ref|NP_461267.1| NADH dehydrogenase I chain E [; PMID:11677609;
     gi|16503549|emb|CAD07557.1| NADH dehydrogenase I chain E [; PMID:11677608;
     gi|29141054|ref|NP_804396.1| NADH dehydrogenase I chain E [; PMID:12644504;
     gi|16761250|ref|NP_456867.1| NADH dehydrogenase I chain E [; PMID:11677608;
     gi|464276|sp|P33903|NUOE_SALTY NADH-quinone oxidoreductase ch; PMID:8234329,11677609,11677608,12644504;
     gi|29136680|gb|AAO68245.1| NADH dehydrogenase I chain E [; PMID:12644504;
     gi|25285038|pir||AC0797 NADH2 dehydrogenase (ubiquinon; PMID:11677608;
     gi|16420866|gb|AAL21226.1| NADH dehydrogenase I chain E [; PMID:11677609;
     gi|349636|gb|AAA16061.1| NADH dehydrogenase subunit ; PMID:8234329;
208.          36          170          32          76.14          2.0e-19
     gi|15806513|ref|NP_295224.1| NADH dehydrogenase I, E subuni; PMID:10567266;
     gi|7473201|pir||G75387 NADH dehydrogenase I, E subuni; PMID:10567266;
     gi|6459263|gb|AAF11068.1| NADH dehydrogenase I, E subuni; PMID:10567266;
209.          5          173          32          95.45          2.0e-19
     gi|83816470|ref|YP_444542.1| NADH-ubiquinone oxidoreductase; PMID:;
210.          17          175          31          89.77          2.0e-19
     gi|58579127|ref|YP_197339.1| ATP synthase subunit E [Ehrlic; PMID:;
211.          25          173          30          84.09          2.0e-19
     gi|53755446|emb|CAH16942.1| NADH dehydrogenase I chain E [; PMID:;
212.          25          173          0          84.09          2.0e-19
     gi|2506955|sp|P33601|NUOE_ECOLI NADH-quinone oxidoreductase ch; PMID:7690854,8157582,9278503,9205837,12471157,12384590,12704152;
     gi|1799646|dbj|BAA16114.1| NADH dehydrogenase (ubiquinone; PMID:9205837;
     gi|26109077|gb|AAN81280.1|AE016763_239 NADH dehydrogenase I chain E [; PMID:12471157;
     gi|1788621|gb|AAC75345.1| NADH dehydrogenase I chain E [; PMID:9278503;
     gi|30063711|ref|NP_837882.1| NADH dehydrogenase I chain E [; PMID:12704152;
     gi|26248672|ref|NP_754712.1| NADH dehydrogenase I chain E [; PMID:12471157;
     gi|1799652|dbj|BAA16119.1| NADH dehydrogenase (ubiquinone; PMID:9205837;
     gi|431019|gb|AAA03536.1| NADH dehydrogenase ; PMID:;
     gi|24113657|ref|NP_708167.1| NADH dehydrogenase I chain E [; PMID:12384590;
     gi|30041966|gb|AAP17692.1| NADH dehydrogenase I chain E [; PMID:12704152;
     gi|24052721|gb|AAN43874.1| NADH dehydrogenase I chain E [; PMID:12384590;
     gi|16130220|ref|NP_416788.1| NADH dehydrogenase I chain E [; PMID:9278503;
     gi|7427767|pir||C65000 NADH2 dehydrogenase (ubiquinon; PMID:7690854,7607227,9278503;
213.          36          173          33          77.84          3.0e-19
     gi|13474500|ref|NP_106069.1| NAD-dependent formate dehydrog; PMID:11214968;
     gi|14025254|dbj|BAB51855.1| NAD-dependent formate dehydrog; PMID:11214968;
214.          20          169          34          84.66          4.0e-19
     gi|71369537|ref|ZP_00659976.1| NADH dehydrogenase (ubiquinone; PMID:;
215.          35          173          31          78.41          4.0e-19
     gi|71491585|gb|EAO23906.1| NADH dehydrogenase (ubiquinone; PMID:;
216.          21          174          0          86.93          4.0e-19
     gi|227297|prf||1701345A NADH dehydrogenase FeS protein; PMID:2583350;
217.          31          172          35          80.11          5.0e-19
     gi|49081510|gb|AAT50155.1| PA2640 [synthetic construct] ; PMID:;
218.          31          172          35          80.11          5.0e-19
     gi|32037675|ref|ZP_00135947.1| hypothetical protein [Pseudomo; PMID:;
     gi|15597836|ref|NP_251330.1| NADH dehydrogenase I chain E [; PMID:10984043;
     gi|9948708|gb|AAG06028.1| NADH dehydrogenase I chain E [; PMID:10984043;
     gi|11350642|pir||E83316 NADH dehydrogenase I chain E P; PMID:10984043;
219.          33          173          33          79.55          5.0e-19
     gi|83372465|ref|ZP_00917245.1| NAD-dependent formate dehydrog; PMID:;
220.          21          173          33          86.36          5.0e-19
     gi|56416799|ref|YP_153873.1| ATP synthase subunit E [Anapla; PMID:;
221.          35          175          34          79.55          6.0e-19
     gi|6647664|sp|P95177|NUOE_MYCTU NADH-quinone oxidoreductase ch; PMID:9634230,12218036,12788972;
     gi|7427771|pir||F70647 NADH2 dehydrogenase (ubiquinon; PMID:9634230;
     gi|31794325|ref|NP_856818.1| PROBABLE NADH DEHYDROGENASE I ; PMID:;
     gi|13883047|gb|AAK47576.1| NADH dehydrogenase I, E subuni; PMID:;
     gi|15610285|ref|NP_217665.1| nuoE [Mycobacterium tuberculos; PMID:9634230;
     gi|31619921|emb|CAD95265.1| PROBABLE NADH DEHYDROGENASE I ; PMID:;
     gi|15842725|ref|NP_337762.1| NADH dehydrogenase I, E subuni; PMID:;
     gi|1781219|emb|CAB06290.1| nuoE [Mycobacterium tuberculos; PMID:9634230;
222.          16          170          33          87.50          6.0e-19
     gi|90588299|ref|ZP_01243951.1| NADH dehydrogenase (ubiquinone; PMID:;
223.          23          161          32          78.41          6.0e-19
     gi|46200218|ref|YP_005885.1| NADH-quinone oxidoreductase ch; PMID:;
224.          17          173          31          88.64          6.0e-19
     gi|67539814|ref|XP_663681.1| hypothetical protein AN6077.2 ; PMID:;
225.          38          175          35          77.84          8.0e-19
     gi|95102970|gb|ABF51426.1| NADH-ubiquinone reductase [Bom; PMID:;
226.          35          173          33          78.41          8.0e-19
     gi|76259277|ref|ZP_00766927.1| NADH dehydrogenase (ubiquinone; PMID:;
227.          41          173          0          75.00          8.0e-19
     gi|94413138|ref|ZP_01293029.1| hypothetical protein PaerP_010; PMID:;
228.          31          172          35          80.11          1.0e-18
     gi|26990816|ref|NP_746241.1| ATP synthase subunit E [Pseudo; PMID:;
     gi|24985822|gb|AAN69705.1|AE016606_8 NADH dehydrogenase I, E subuni; PMID:;
229.          31          172          35          80.11          1.0e-18
     gi|9719441|gb|AAF97801.1| NADH dehydrogenase I subunit E; PMID:12118882;
230.          31          172          35          80.11          1.0e-18
     gi|71554161|gb|AAZ33372.1| NADH-quinone oxidoreductase, E; PMID:;
231.          35          173          32          78.41          1.0e-18
     gi|39576683|emb|CAE80847.1| NADH dehydrogenase I chain E [; PMID:;
232.          7          172          31          93.75          1.0e-18
     gi|24346629|gb|AAN54091.1|AE015546_8 NADH dehydrogenase I, E subuni; PMID:12368813;
     gi|24372604|ref|NP_716646.1| ATP synthase subunit E [Shewan; PMID:12368813;
233.          20          176          30          88.64          1.0e-18
     gi|33592011|ref|NP_879655.1| respiratory-chain NADH dehydro; PMID:;
     gi|33571655|emb|CAE41148.1| respiratory-chain NADH dehydro; PMID:;
     gi|33602812|ref|NP_890372.1| respiratory-chain NADH dehydro; PMID:;
     gi|33577254|emb|CAE35811.1| respiratory-chain NADH dehydro; PMID:;
234.          20          176          0          88.64          1.0e-18
     gi|82738363|ref|ZP_00901197.1| NADH dehydrogenase (ubiquinone; PMID:;
235.          21          175          0          87.50          1.0e-18
     gi|94403992|ref|XP_987021.1| PREDICTED: similar to NADH-ubi; PMID:;
236.          31          172          35          80.11          2.0e-18
     gi|104782524|ref|YP_609022.1| NADH dehydrogenase I chain E [; PMID:;
237.          24          172          33          84.09          2.0e-18
     gi|85858941|ref|YP_461143.1| NADH-quinone oxidoreductase ch; PMID:;
     gi|85722032|gb|ABC76975.1| NADH-quinone oxidoreductase ch; PMID:;
238.          35          169          32          76.14          2.0e-18
     gi|84494926|ref|ZP_00994045.1| ATP synthase subunit E [Janiba; PMID:;
239.          31          173          32          80.68          2.0e-18
     gi|82777693|ref|YP_404042.1| NADH dehydrogenase I chain E [; PMID:;
240.          35          173          31          78.41          2.0e-18
     gi|71491242|gb|EAO23573.1| NADH dehydrogenase (ubiquinone; PMID:;
241.          36          175          30          78.98          2.0e-18
     gi|94985020|ref|YP_604384.1| NADH-quinone oxidoreductase, E; PMID:;
242.          21          173          0          86.36          2.0e-18
     gi|71491248|gb|EAO23579.1| NADH dehydrogenase (ubiquinone; PMID:;
243.          31          172          35          80.11          3.0e-18
     gi|70731259|ref|YP_261000.1| ATP synthase subunit E [Pseudo; PMID:;
244.          20          173          32          86.93          3.0e-18
     gi|72007636|ref|XP_783224.1| PREDICTED: similar to NADH-ubi; PMID:;
245.          31          173          32          80.68          3.0e-18
     gi|49612474|emb|CAG75924.1| NADH-quinone oxidoreductase ch; PMID:;
246.          17          173          30          88.64          3.0e-18
     gi|71001132|ref|XP_755247.1| NADH-ubiquinone dehydrogenase ; PMID:;
247.          20          176          29          88.64          3.0e-18
     gi|33574336|emb|CAE38672.1| respiratory-chain NADH dehydro; PMID:;
     gi|33597907|ref|NP_885550.1| respiratory-chain NADH dehydro; PMID:;
248.          35          169          0          76.14          3.0e-18
     gi|99034475|ref|ZP_01314468.1| hypothetical protein Wendoof_0; PMID:;
249.          41          169          33          72.73          4.0e-18
     gi|89210763|ref|ZP_01189148.1| NADH dehydrogenase (ubiquinone; PMID:;
250.          24          173          32          84.66          4.0e-18
     gi|85103526|ref|XP_961535.1| NADH-UBIQUINONE OXIDOREDUCTASE; PMID:;
251.          42          174          0          75.00          5.0e-18
     gi|68234895|ref|ZP_00573947.1| NADH dehydrogenase (ubiquinone; PMID:;
252.          9          70          22          34.66          6.0e-18
     gi|19070773|gb|AAL83989.1| (AF358773) NADH-ubiquinine oxi; PMID:;
253.          21          175          0          87.50          7.0e-18
     gi|47573250|ref|ZP_00243289.1| COG1905: NADH:ubiquinone oxido; PMID:;
254.          38          172          32          76.14          9.0e-18
     gi|48855031|ref|ZP_00309191.1| COG1905: NADH:ubiquinone oxido; PMID:;
255.          31          172          0          80.11          9.0e-18
     gi|83775104|dbj|BAE65227.1| unnamed protein product [Asper; PMID:;
256.          35          154          35          67.61          1.0e-17
     gi|88941315|ref|ZP_01146735.1| putative NAD-dependent formate; PMID:;
257.          41          173          34          75.00          1.0e-17
     gi|72019000|ref|XP_797683.1| PREDICTED: similar to NADH-ubi; PMID:;
258.          21          169          29          84.09          1.0e-17
     gi|82702224|ref|YP_411790.1| NADH-quinone oxidoreductase, E; PMID:;
259.          27          174          33          83.52          2.0e-17
     gi|77740100|ref|ZP_00808589.1| NADH dehydrogenase (ubiquinone; PMID:;
260.          20          171          32          85.80          2.0e-17
     gi|71004230|ref|XP_756781.1| hypothetical protein UM00634.1; PMID:;
261.          31          172          31          80.11          2.0e-17
     gi|77975476|ref|ZP_00831011.1| COG1905: NADH:ubiquinone oxido; PMID:;
262.          31          172          31          80.11          2.0e-17
     gi|51590185|emb|CAH21822.1| NADH dehydrogenase I chain E [; PMID:;
263.          31          172          31          80.11          2.0e-17
     gi|45437016|gb|AAS62568.1| NADH dehydrogenase I chain E [; PMID:;
264.          31          172          31          80.11          2.0e-17
     gi|15980543|emb|CAC91354.1| NADH dehydrogenase I chain E [; PMID:11586360;
     gi|16122770|ref|NP_406083.1| NADH dehydrogenase I chain E [; PMID:11586360;
     gi|25285039|pir||AF0311 NADH2 dehydrogenase (ubiquinon; PMID:11586360;
265.          31          172          31          80.11          2.0e-17
     gi|77961184|ref|ZP_00825028.1| COG1905: NADH:ubiquinone oxido; PMID:;
266.          54          156          38          57.95          3.0e-17
     gi|94496478|ref|ZP_01303055.1| NADH-quinone oxidoreductase, E; PMID:;
267.          22          173          32          85.80          3.0e-17
     gi|88940694|ref|ZP_01146128.1| NADH-quinone oxidoreductase, E; PMID:;
268.          35          173          32          78.41          3.0e-17
     gi|41409303|ref|NP_962139.1| ATP synthase subunit E [Mycoba; PMID:;
269.          6          172          31          94.32          3.0e-17
     gi|36786407|emb|CAE15460.1| NADH dehydrogenase I chain E (; PMID:;
270.          17          173          31          88.64          3.0e-17
     gi|90306040|gb|EAS35671.1| hypothetical protein CIMG_0102; PMID:;
271.          35          169          0          76.14          3.0e-17
     gi|67930068|ref|ZP_00523244.1| NADH dehydrogenase (ubiquinone; PMID:;
272.          27          174          34          83.52          4.0e-17
     gi|90426118|ref|YP_534488.1| NADH dehydrogenase (ubiquinone; PMID:;
273.          35          173          32          78.41          4.0e-17
     gi|14523960|gb|AAK65488.1| NuoE2 NADH I CHAIN E [Sinorhiz; PMID:11481432;
     gi|25285036|pir||F95365 NADH2 dehydrogenase (ubiquinon; PMID:11474104,11481432;
     gi|17380452|sp|P56910|NUE2_RHIME NADH-quinone oxidoreductase ch; PMID:11481432;
     gi|16263283|ref|NP_436076.1| NuoE2 NADH I CHAIN E [Sinorhiz; PMID:11481432,11474104;
274.          92          176          37          47.73          5.0e-17
     gi|20515893|gb|AAM24149.1| NADH:ubiquinone oxidoreductase; PMID:11997336;
     gi|20807374|ref|NP_622545.1| NADH:ubiquinone oxidoreductase; PMID:11997336;
275.          24          169          31          82.39          6.0e-17
     gi|78363452|gb|ABB41417.1| NADH-quinone oxidoreductase, E; PMID:;
276.          41          171          30          73.86          6.0e-17
     gi|33595782|ref|NP_883425.1| NAD-dependent formate dehydrog; PMID:;
     gi|33565861|emb|CAE36408.1| NAD-dependent formate dehydrog; PMID:;
277.          41          171          30          73.86          6.0e-17
     gi|33600309|ref|NP_887869.1| NAD-dependent formate dehydrog; PMID:;
     gi|33567908|emb|CAE31821.1| NAD-dependent formate dehydrog; PMID:;
278.          38          173          0          76.70          6.0e-17
     gi|91200366|emb|CAJ73412.1| strongly similar to NADH dehyd; PMID:;
279.          91          176          32          48.30          3.0e-16
     gi|40563|emb|CAA79492.1| [2Fe-2S] ferredoxin [Clostridi; PMID:7916603,8334159;
     gi|119942|sp|P07324|FER2_CLOPA Ferredoxin, 2Fe-2S (2FeCpFd) ; PMID:7916603,8334159,3790505,8392833;
     gi|65694|pir||FECL2P ferredoxin [2Fe-2S] - Clostrid; PMID:3790505,7916603,8334159,7947772,8688437;
280.          95          176          33          46.02          5.0e-15
     gi|15644176|ref|NP_229225.1| Fe-hydrogenase, subunit beta [; PMID:10360571;
     gi|4981989|gb|AAD36495.1| Fe-hydrogenase, subunit beta [; PMID:10360571;
     gi|2865516|gb|AAC02685.1| Fe-hydrogenase beta subunit [T; PMID:10482784;
     gi|7431974|pir||F72256 Fe-hydrogenase, subunit beta -; PMID:10360571;
281.          85          176          19          51.70          5.0e-15
     gi|27376876|ref|NP_768405.1| ferredoxin [Bradyrhizobium jap; PMID:12597275;
     gi|27350018|dbj|BAC47030.1| ferredoxin [Bradyrhizobium jap; PMID:12597275,12597279;
     gi|12620475|gb|AAG60751.1|AF322012_56 Fer2 [Bradyrhizobium japonicum; PMID:11157954;
282.          89          176          30          49.43          1.0e-14
     gi|7431975|pir||D72430 NADP-reducing hydrogenase, sub; PMID:10360571;
     gi|4980493|gb|AAD35104.1| NADP-reducing hydrogenase, sub; PMID:10360571;
     gi|15642785|ref|NP_227826.1| NADP-reducing hydrogenase, sub; PMID:10360571;
283.          83          172          23          50.57          2.0e-14
     gi|25530495|pir||AC1881 hypothetical protein all0596 [; PMID:11759840;
     gi|17129942|dbj|BAB72554.1| all0596 [Nostoc sp. PCC 7120] ; PMID:11759840;
     gi|17228092|ref|NP_484640.1| hypothetical protein all0596 [; PMID:11759840;
284.          94          176          24          46.59          5.0e-14
     gi|7514860|pir||JC7085 ferredoxin [2Fe-2S] fdx4 [vali; PMID:9537320,10441520;
     gi|12644516|sp|O66511|FER2_AQUAE Ferredoxin, 2Fe-2S (AaFd4) ; PMID:10441520,9537320,10884354;
285.          94          176          24          46.59          5.0e-14
     gi|9955119|pdb|1F37|A Chain A, Structure Of A Thiore; PMID:10441520,10884354;
     gi|24158927|pdb|1M2A|A Chain A, Crystal Structure At ; PMID:;
     gi|24158928|pdb|1M2A|B Chain B, Crystal Structure At ; PMID:;
     gi|9955120|pdb|1F37|B Chain B, Structure Of A Thiore; PMID:10441520,10884354;
286.          95          176          29          46.02          6.0e-14
     gi|15644171|ref|NP_229220.1| hypothetical protein [Thermoto; PMID:10360571;
     gi|4981984|gb|AAD36490.1| hypothetical protein TM_1420 [; PMID:10360571;
     gi|7462421|pir||A72256 hypothetical protein - Thermot; PMID:10360571;
287.          92          176          26          47.73          3.0e-13
     gi|14250934|emb|CAC39230.1| HymB protein [Eubacterium acid; PMID:12560990;
288.          92          176          24          47.73          3.0e-13
     gi|11356511|pir||T44682 ferredoxin homolog [imported] ; PMID:9742225;
     gi|12644506|sp|O87688|CBIW_BACME Putative 2Fe-2S ferredoxin ; PMID:9742225;
     gi|3724037|emb|CAA04306.1| putative ferredoxin [Bacillus ; PMID:9742225;
289.          85          176          23          51.70          3.0e-13
     gi|17231522|ref|NP_488070.1| unknown protein [Nostoc sp. PC; PMID:11759840;
     gi|25533984|pir||AG2309 hypothetical protein alr4030 [; PMID:11759840;
     gi|17133165|dbj|BAB75729.1| ORF_ID:alr4030~unknown protein; PMID:11759840;
290.          94          172          28          44.32          4.0e-13
     gi|16554498|ref|NP_444222.1| Ferredoxin [Halobacterium sp. ; PMID:11016950;
291.          94          172          28          44.32          4.0e-13
     gi|10581045|gb|AAG19841.1| Vng1561c [Halobacterium sp. NR; PMID:11016950;
     gi|25410183|pir||E84309 hypothetical protein Vng1561c ; PMID:11016950;
292.          86          174          25          50.00          1.0e-12
     gi|7427777|pir||S75536 NADH2 dehydrogenase (ubiquinon; PMID:8905231;
     gi|1771717|emb|CAA66209.1| hydrogenase subunit [Synechocy; PMID:8980640;
     gi|16330689|ref|NP_441417.1| hydrogenase subunit [Synechocy; PMID:8905231,8590279;
     gi|1653181|dbj|BAA18097.1| hydrogenase subunit [Synechocy; PMID:8590279,8905231;
293.          86          175          24          50.57          1.0e-12
     gi|17130097|dbj|BAB72709.1| hydrogenase subunit [Nostoc sp; PMID:11759840;
     gi|17228247|ref|NP_484795.1| hydrogenase subunit [Nostoc sp; PMID:11759840;
     gi|25285054|pir||AF1900 hydrogenase chain [imported] -; PMID:11759840;
294.          94          176          17          46.59          2.0e-12
     gi|17548848|ref|NP_522188.1| PUTATIVE FERREDOXIN PROTEIN [R; PMID:11823852;
     gi|17431097|emb|CAD17778.1| PUTATIVE FERREDOXIN PROTEIN [R; PMID:11823852;
295.          94          170          21          43.18          4.0e-12
     gi|3947771|emb|CAA73873.1| hoxF [Synechococcus sp. PCC 63; PMID:9541559;
296.          88          169          26          46.02          1.0e-11
     gi|13366092|dbj|BAB39382.1| hydrogenase diaphorase large s; PMID:;
297.          94          170          20          43.18          1.0e-11
     gi|21674473|ref|NP_662538.1| (NC_002932) ferredoxin, 2Fe-2S; PMID:12093901;
     gi|21647662|gb|AAM72880.1| (AE012921) ferredoxin, 2Fe-2S ; PMID:12093901;
298.          93          176          23          47.16          2.0e-11
     gi|17545048|ref|NP_518450.1| PUTATIVE FERREDOXIN 2FE-2S PRO; PMID:11823852;
     gi|17427338|emb|CAD13857.1| PUTATIVE FERREDOXIN 2FE-2S PRO; PMID:11823852;
299.          90          175          23          48.30          1.0e-09
     gi|21647538|gb|AAM72767.1| (AE012910) ferredoxin, 2Fe-2S ; PMID:12093901;
     gi|21674360|ref|NP_662425.1| (NC_002932) ferredoxin, 2Fe-2S; PMID:12093901;
300.          95          173          20          44.32          4.0e-09
     gi|17130757|dbj|BAB73367.1| alr1410 [Nostoc sp. PCC 7120] ; PMID:11759840;
     gi|17228905|ref|NP_485453.1| hypothetical protein alr1410 [; PMID:11759840;
301.          89          171          36          46.59          1.0e-08
     gi|15644177|ref|NP_229226.1| Fe-hydrogenase, subunit alpha ; PMID:10360571;
     gi|2865517|gb|AAC02686.1| Fe-hydrogenase alpha subunit [; PMID:10482784;
     gi|7433128|pir||G72256 hydrogenase (EC 1.18.99.1) (Fe; PMID:10360571;
     gi|4981990|gb|AAD36496.1| Fe-hydrogenase, subunit alpha ; PMID:10360571;
302.          134          176          36          23.86          1.0e-08
     gi|7430735|pir||D70310 ferredoxin [2Fe-2S] - Aquifex ; PMID:9537320;
     gi|2982853|gb|AAC06474.1| ferredoxin [Aquifex aeolicus V; PMID:9537320;
     gi|15605694|ref|NP_213071.1| ferredoxin [Aquifex aeolicus] ; PMID:9537320;
303.          86          175          23          50.57          6.0e-08
     gi|75910850|ref|YP_325146.1| Respiratory-chain NADH dehydro; PMID:;
     gi|1032476|emb|CAA55873.1| hydrogenase subunit [Anabaena ; PMID:7588754;
     gi|2126554|pir||I39730 NADH2 dehydrogenase (ubiquinon; PMID:7588754;
     gi|75704575|gb|ABA24251.1| Respiratory-chain NADH dehydro; PMID:;
304.          92          172          20          45.45          1.0e-07
     gi|16329813|ref|NP_440541.1| unknown protein [Synechocystis; PMID:8905231,8590279;
     gi|1652298|dbj|BAA17221.1| ORF_ID:sll1584~unknown protein; PMID:8590279,8905231;
     gi|7430736|pir||S75307 ferredoxin [2Fe-2S] sll1584 [s; PMID:8905231;
305.          90          175          17          48.30          7.0e-07
     gi|15612930|ref|NP_241233.1| BH0367~unknown conserved prote; PMID:11058132,10972189,10805564,10484179,10427704,10192928,10086842,10086841;
     gi|25489263|pir||G83695 hypothetical protein BH0367 [i; PMID:11058132;
     gi|10172980|dbj|BAB04086.1| BH0367~unknown conserved prote; PMID:10086841,10086842,10192928,10484179,10427704,10805564,10972189,11058132;
306.          57          176          28          67.61          1.0e-05
     gi|94448907|emb|CAJ44288.1| NADH dehydrogenase (ubiquinone; PMID:;

Notes: The reference system provides subject-oriented search and sequence-oriented search for reference collection. The reference filter supports the classification and selection of references. You can use a group of buttons to select references based on your interest or the relative level of references that are justified base on some criteria, e.g. trusted or high similairties. By deafult, PSCA shows the references whose levels are better than gathering or high similarity of reference classification.

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