PSCA reference

NP_717203.1;PG9878A	Protein Sequence Comparative Analysis (PSCA)

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NP_717203.1 REFERENCE SYSTEM

Accession: NP_717203.1
Description: gi|24373160|ref|NP_717203.1| hypothetical protein SO1590 [Shewanella oneidensis MR-1]
Organism: SHEWANELLA ONEIDENSIS
Keyword: gi|24373160|ref|NP_717203.1| hypothetical protein SO1590 [Shewanella oneidensis MR-1]

References

PMID Filter

Deleting genome references

Reference classification

Trusted or extreme similarity

Gathering or high similarity

Noise or low similarity

Sequence reference

SP-EMBL: ; PMID:;
GenBank: NP_717203; PMID:;

Family annotation

1. trusted evalue:2.3e-100
Pfam:BIG_478 0; PMID:;

PDB similairty

No.    Start    End    Identity%    Coverage%    Evalue
1.          1          140          100          99.29          3.0e-77
     Pdb:2OOJ CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION FROM DU; PMID:;
2.          2          130          26          91.43          7.0e-07
     Pdb:2Q03 CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN (YP_563039.1) F; PMID:;

NR homologs

No.    Start    End    Identity%    Coverage%    Evalue
1.          1          140          100          99.29          1.0e-75
     gi|24373160|ref|NP_717203.1| hypothetical protein SO1590 [S; PMID:;
     gi|24347365|gb|AAN54647.1| hypothetical protein SO_1590 [; PMID:;
2.          1          137          93          97.14          8.0e-69
3.          1          133          95          94.29          3.0e-68
     gi|78686457|ref|ZP_00851224.1| conserved hypothetical protein; PMID:;
     gi|78505775|gb|EAP19301.1| conserved hypothetical protein; PMID:;
4.          1          137          92          97.14          3.0e-68
5.          1          137          85          97.14          2.0e-62
     gi|68540884|ref|ZP_00580633.1| conserved hypothetical protein; PMID:;
     gi|68521512|gb|EAN45005.1| conserved hypothetical protein; PMID:;
6.          5          130          65          89.29          3.0e-40
     gi|88857053|ref|ZP_01131696.1| hypothetical protein PTD2_0079; PMID:;
     gi|88820250|gb|EAR30062.1| hypothetical protein PTD2_0079; PMID:;
7.          5          130          54          89.29          2.0e-30
     gi|94550528|gb|ABF40452.1| conserved hypothetical protein; PMID:;
     gi|94968478|ref|YP_590526.1| hypothetical protein Acid345_1; PMID:;
8.          8          130          55          87.14          3.0e-29
     gi|78060611|ref|YP_367186.1| hypothetical protein Bcep18194; PMID:;
     gi|77965161|gb|ABB06542.1| hypothetical protein Bcep18194; PMID:;
9.          8          137          53          92.14          8.0e-29
     gi|84352157|ref|ZP_00977128.1| hypothetical protein BcenP_010; PMID:;
10.          8          137          53          92.14          3.0e-28
     gi|67666415|ref|ZP_00463663.1| conserved hypothetical protein; PMID:;
     gi|67100027|gb|EAM17189.1| conserved hypothetical protein; PMID:;
     gi|105897596|gb|ABF80554.1| conserved hypothetical protein; PMID:;
11.          5          130          44          89.29          2.0e-24
     gi|88797209|ref|ZP_01112799.1| hypothetical protein MED297_20; PMID:;
     gi|88780078|gb|EAR11263.1| hypothetical protein MED297_20; PMID:;
12.          7          130          40          87.86          3.0e-15
13.          2          129          27          90.71          2.0e-07
     gi|91793388|ref|YP_563039.1| hypothetical protein Sden_2034; PMID:;
     gi|91715390|gb|ABE55316.1| hypothetical protein Sden_2034; PMID:;
14.          25          120          36          67.86          3.0e-07
     gi|26541553|gb|AAN85540.1| hypothetical protein [Streptom; PMID:;
15.          10          129          29          85.00          8.0e-05
     gi|34499779|ref|NP_903994.1| hypothetical protein CV4324 [C; PMID:;
     gi|34105629|gb|AAQ61983.1| conserved hypothetical protein; PMID:;
16.          1          129          26          91.43          1.0e-04
     gi|88860648|ref|ZP_01135285.1| hypothetical protein PTD2_0530; PMID:;
     gi|88817243|gb|EAR27061.1| hypothetical protein PTD2_0530; PMID:;

Notes: The reference system provides subject-oriented search and sequence-oriented search for reference collection. The reference filter supports the classification and selection of references. You can use a group of buttons to select references based on your interest or the relative level of references that are justified base on some criteria, e.g. trusted or high similairties. By deafult, PSCA shows the references whose levels are better than gathering or high similarity of reference classification.

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