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   NM_002092;NM_002092
Protein Sequence Comparative Analysis   (PSCA)
 
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NM_002092    REFERENCE SYSTEM

Accession: NM_002092
Description: NM_002092 Homo sapiens G-rich RNA sequence binding factor 1 (GRSF1), transcript variant 1, mRNA, coding region:84-1526
Organism: HOMO SAPIENS
Keyword: NM_002092 Homo sapiens G-rich RNA sequence binding factor 1 (GRSF1), transcript variant 1, mRNA, coding region:84-1526

  

References           
PMID Filter
     Deleting genome references          
     Reference classification      Trusted or extreme similarity       Gathering or high similarity       Noise or low similarity
 
Sequence reference                    
   SP-EMBL: ;  PMID:;
   GenBank: ;  PMID:;
Family annotation                  
1.          trusted          evalue:3.4e-12
    Pfam:PF00076   RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain);  PMID:8290338;
2.          trusted          evalue:2.1e-13
    Pfam:v3_1_0:1p1tA00   0;  PMID:;
3.          trusted          evalue:6.0e-12
    Pfam:v3_1_0:1s79A00   0;  PMID:;
4.          trusted          evalue:5.7e-13
    Pfam:v3_1_0:1fjeB02   0;  PMID:;
5.          trusted          evalue:1.4e-13
    Pfam:v3_1_0:1rk8A00   0;  PMID:;
6.          trusted          evalue:1.5e-12
    Pfam:v3_1_0:1sxl000   0;  PMID:;
7.          trusted          evalue:1.6e-11
    Pfam:v3_1_0:2hzcA00   0;  PMID:;
8.          trusted          evalue:1.4e-11
    Pfam:v3_1_0:1hl6C00   0;  PMID:;
9.          trusted          evalue:6.5e-12
    Pfam:v3_1_0:1no8A00   0;  PMID:;
10.          trusted          evalue:7.0e-11
    Pfam:v3_1_0:1cvjG02   0;  PMID:;
11.          trusted          evalue:3.3e-11
    Pfam:v3_1_0:1l3kA01   0;  PMID:;
12.          trusted          evalue:5.6e-11
    Pfam:v3_1_0:1fxlA02   0;  PMID:;
13.          trusted          evalue:5.0e-11
    Pfam:v3_1_0:1fjeB01   0;  PMID:;
14.          trusted          evalue:8.0e-11
    Pfam:v3_1_0:1l3kA02   0;  PMID:;
15.          trusted          evalue:2.2e-10
    Pfam:v3_1_0:1x5uA01   0;  PMID:;
16.          trusted          evalue:2.7e-10
    Pfam:v3_1_0:1n54B00   0;  PMID:;
17.          trusted          evalue:2.6e-10
    Pfam:v3_1_0:2u2fA00   0;  PMID:;
18.          trusted          evalue:1.8e-10
    Pfam:v3_1_0:1h2vZ00   0;  PMID:;
19.          trusted          evalue:2.7e-09
    Pfam:v3_1_0:1cvjA01   0;  PMID:;
20.          trusted          evalue:3.6e-09
    Pfam:v3_1_0:1oiaB00   0;  PMID:;
21.          trusted          evalue:1.3e-09
    Pfam:v3_1_0:1qm9A02   0;  PMID:;
22.          trusted          evalue:9.7e-09
    Pfam:v3_1_0:1fxlA01   0;  PMID:;
23.          trusted          evalue:3.3e-09
    Pfam:v3_1_0:1nu4A00   0;  PMID:;
24.          trusted          evalue:1.9e-08
    Pfam:v3_1_0:2u1a000   0;  PMID:;
25.          trusted          evalue:4.5e-09
    Pfam:v3_1_0:1qm9A01   0;  PMID:;
26.          trusted          evalue:2.1e-08
    Pfam:v3_1_0:1sjrA00   0;  PMID:;
27.          trusted          evalue:5.9e-07
    Pfam:v3_1_0:1o0pA00   0;  PMID:;
28.          trusted          evalue:7.4e-07
    Pfam:v3_1_0:1jmtA00   0;  PMID:;
29.          trusted          evalue:2.6e-05
    Pfam:v3_1_0:3sxlA02   0;  PMID:;
30.          trusted          evalue:8.5e-05
    Pfam:v3_1_0:1cvjH02   0;  PMID:;
31.          trusted          evalue:9.8e-04
    Pfam:v3_1_0:1whvA00   0;  PMID:;
 
PDB similairty                    
No.    Start    End    Identity%    Coverage%    Evalue
1.          140          245          100          21.88          2.0e-58
     Pdb:2LMI NMR STRUCTURE OF THE PROTEIN BC040485 FROM HOMO SAPIENS ; PMID:;
     Pdb:4QU6 CRYSTAL STRUCTURE OF A G-RICH RNA SEQUENCE BINDING FACTOR 1 ; PMID:;
2.          400          480          98          16.67          3.0e-42
     Pdb:4QU7 CRYSTAL STRUCTURE OF A G-RICH RNA SEQUENCE BINDING FACTOR 1 ; PMID:;
3.          397          476          61          16.46          4.0e-23
     Pdb:2HGN NMR STRUCTURE OF THE THIRD QRRM DOMAIN OF HUMAN HNRNP F ; PMID:;
     Pdb:2KG1 STRUCTURE OF THE THIRD QRRM DOMAIN OF HNRNP F IN COMPLEX WIT; PMID:;
4.          150          250          46          20.83          2.0e-22
     Pdb:2LXU SOLUTION NMR STRUCTURE OF THE EUKARYOTIC RNA RECOGNITION MOT; PMID:;
5.          397          475          59          16.25          4.0e-22
     Pdb:1WEZ SOLUTION STRUCTURE OF RRM DOMAIN IN HETEROGENEOUS NUCLEAR RI; PMID:;
6.          248          331          59          17.29          4.0e-21
     Pdb:1WG5 SOLUTION STRUCTURE OF THE FIRST RRM DOMAIN IN HETEROGENEOUS ; PMID:;
7.          150          237          46          18.12          8.0e-21
     Pdb:2KFY NMR STRUCTURE OF THE FIRST QRRM OF HNRNP F IN COMPLEX WITH A; PMID:;
     Pdb:2HGL NMR STRUCTURE OF THE FIRST QRRM DOMAIN OF HUMAN HNRNP F ; PMID:;
8.          150          237          46          18.12          9.0e-21
     Pdb:2DB1 SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN IN HETEROGENEOU; PMID:;
9.          243          332          53          18.54          3.0e-19
     Pdb:2HGM NMR STRUCTURE OF THE SECOND QRRM DOMAIN OF HUMAN HNRNP F ; PMID:;
     Pdb:2KG0 STRUCTURE OF THE SECOND QRRM DOMAIN OF HNRNP F IN COMPLEX WI; PMID:;
10.          151          245          34          19.58          3.0e-11
     Pdb:2DHA SOLUTION STRUCTURE OF THE SECOND RNA RECOGNITION MOTIF IN HY; PMID:;
11.          251          322          43          14.79          1.0e-07
     Pdb:2DGW SOLUTION STRUCTURE OF THE SECOND RNA RECOGNITION MOTIF IN RN; PMID:;
12.          150          240          31          18.75          3.0e-07
     Pdb:1WEL SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN NP_006038 ; PMID:;
13.          147          224          37          16.04          8.0e-07
     Pdb:2DNN SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN RNA-BINDING PROT; PMID:;
14.          157          245          31          18.33          3.0e-04
     Pdb:2CPY SOLUTION STRUCTURE OF RNA BINDING DOMAIN 3 IN RNA BINDING MO; PMID:;
 
NR homologs                 
No.    Start    End    Identity%    Coverage%    Evalue
 

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