PSCA reference

NM_002092;NM_002092	Protein Sequence Comparative Analysis (PSCA)

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NM_002092 REFERENCE SYSTEM

Accession: NM_002092
Description: NM_002092 Homo sapiens G-rich RNA sequence binding factor 1 (GRSF1), transcript variant 1, mRNA, coding region:84-1526
Organism: HOMO SAPIENS
Keyword: NM_002092 Homo sapiens G-rich RNA sequence binding factor 1 (GRSF1), transcript variant 1, mRNA, coding region:84-1526

References

PMID Filter

Deleting genome references

Reference classification

Trusted or extreme similarity

Gathering or high similarity

Noise or low similarity

Sequence reference

SP-EMBL: ; PMID:;
GenBank: ; PMID:;

Family annotation

1.          trusted          evalue:3.4e-12
    Pfam:PF00076   RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain);  PMID:8290338;
2.          trusted          evalue:2.1e-13
    Pfam:v3_1_0:1p1tA00   0;  PMID:;
3.          trusted          evalue:6.0e-12
    Pfam:v3_1_0:1s79A00   0;  PMID:;
4.          trusted          evalue:5.7e-13
    Pfam:v3_1_0:1fjeB02   0;  PMID:;
5.          trusted          evalue:1.4e-13
    Pfam:v3_1_0:1rk8A00   0;  PMID:;
6.          trusted          evalue:1.5e-12
    Pfam:v3_1_0:1sxl000   0;  PMID:;
7.          trusted          evalue:1.6e-11
    Pfam:v3_1_0:2hzcA00   0;  PMID:;
8.          trusted          evalue:1.4e-11
    Pfam:v3_1_0:1hl6C00   0;  PMID:;
9.          trusted          evalue:6.5e-12
    Pfam:v3_1_0:1no8A00   0;  PMID:;
10.          trusted          evalue:7.0e-11
    Pfam:v3_1_0:1cvjG02   0;  PMID:;
11.          trusted          evalue:3.3e-11
    Pfam:v3_1_0:1l3kA01   0;  PMID:;
12.          trusted          evalue:5.6e-11
    Pfam:v3_1_0:1fxlA02   0;  PMID:;
13.          trusted          evalue:5.0e-11
    Pfam:v3_1_0:1fjeB01   0;  PMID:;
14.          trusted          evalue:8.0e-11
    Pfam:v3_1_0:1l3kA02   0;  PMID:;
15.          trusted          evalue:2.2e-10
    Pfam:v3_1_0:1x5uA01   0;  PMID:;
16.          trusted          evalue:2.7e-10
    Pfam:v3_1_0:1n54B00   0;  PMID:;
17.          trusted          evalue:2.6e-10
    Pfam:v3_1_0:2u2fA00   0;  PMID:;
18.          trusted          evalue:1.8e-10
    Pfam:v3_1_0:1h2vZ00   0;  PMID:;
19.          trusted          evalue:2.7e-09
    Pfam:v3_1_0:1cvjA01   0;  PMID:;
20.          trusted          evalue:3.6e-09
    Pfam:v3_1_0:1oiaB00   0;  PMID:;
21.          trusted          evalue:1.3e-09
    Pfam:v3_1_0:1qm9A02   0;  PMID:;
22.          trusted          evalue:9.7e-09
    Pfam:v3_1_0:1fxlA01   0;  PMID:;
23.          trusted          evalue:3.3e-09
    Pfam:v3_1_0:1nu4A00   0;  PMID:;
24.          trusted          evalue:1.9e-08
    Pfam:v3_1_0:2u1a000   0;  PMID:;
25.          trusted          evalue:4.5e-09
    Pfam:v3_1_0:1qm9A01   0;  PMID:;
26.          trusted          evalue:2.1e-08
    Pfam:v3_1_0:1sjrA00   0;  PMID:;
27.          trusted          evalue:5.9e-07
    Pfam:v3_1_0:1o0pA00   0;  PMID:;
28.          trusted          evalue:7.4e-07
    Pfam:v3_1_0:1jmtA00   0;  PMID:;
29.          trusted          evalue:2.6e-05
    Pfam:v3_1_0:3sxlA02   0;  PMID:;
30.          trusted          evalue:8.5e-05
    Pfam:v3_1_0:1cvjH02   0;  PMID:;
31.          trusted          evalue:9.8e-04
    Pfam:v3_1_0:1whvA00   0;  PMID:;

PDB similairty

No.    Start    End    Identity%    Coverage%    Evalue
1.          140          245          100          21.88          2.0e-58
     Pdb:2LMI NMR STRUCTURE OF THE PROTEIN BC040485 FROM HOMO SAPIENS ; PMID:;
     Pdb:4QU6 CRYSTAL STRUCTURE OF A G-RICH RNA SEQUENCE BINDING FACTOR 1 ; PMID:;
2.          400          480          98          16.67          3.0e-42
     Pdb:4QU7 CRYSTAL STRUCTURE OF A G-RICH RNA SEQUENCE BINDING FACTOR 1 ; PMID:;
3.          397          476          61          16.46          4.0e-23
     Pdb:2HGN NMR STRUCTURE OF THE THIRD QRRM DOMAIN OF HUMAN HNRNP F ; PMID:;
     Pdb:2KG1 STRUCTURE OF THE THIRD QRRM DOMAIN OF HNRNP F IN COMPLEX WIT; PMID:;
4.          150          250          46          20.83          2.0e-22
     Pdb:2LXU SOLUTION NMR STRUCTURE OF THE EUKARYOTIC RNA RECOGNITION MOT; PMID:;
5.          397          475          59          16.25          4.0e-22
     Pdb:1WEZ SOLUTION STRUCTURE OF RRM DOMAIN IN HETEROGENEOUS NUCLEAR RI; PMID:;
6.          248          331          59          17.29          4.0e-21
     Pdb:1WG5 SOLUTION STRUCTURE OF THE FIRST RRM DOMAIN IN HETEROGENEOUS ; PMID:;
7.          150          237          46          18.12          8.0e-21
     Pdb:2KFY NMR STRUCTURE OF THE FIRST QRRM OF HNRNP F IN COMPLEX WITH A; PMID:;
     Pdb:2HGL NMR STRUCTURE OF THE FIRST QRRM DOMAIN OF HUMAN HNRNP F ; PMID:;
8.          150          237          46          18.12          9.0e-21
     Pdb:2DB1 SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN IN HETEROGENEOU; PMID:;
9.          243          332          53          18.54          3.0e-19
     Pdb:2HGM NMR STRUCTURE OF THE SECOND QRRM DOMAIN OF HUMAN HNRNP F ; PMID:;
     Pdb:2KG0 STRUCTURE OF THE SECOND QRRM DOMAIN OF HNRNP F IN COMPLEX WI; PMID:;
10.          151          245          34          19.58          3.0e-11
     Pdb:2DHA SOLUTION STRUCTURE OF THE SECOND RNA RECOGNITION MOTIF IN HY; PMID:;
11.          251          322          43          14.79          1.0e-07
     Pdb:2DGW SOLUTION STRUCTURE OF THE SECOND RNA RECOGNITION MOTIF IN RN; PMID:;
12.          150          240          31          18.75          3.0e-07
     Pdb:1WEL SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN NP_006038 ; PMID:;
13.          147          224          37          16.04          8.0e-07
     Pdb:2DNN SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN RNA-BINDING PROT; PMID:;
14.          157          245          31          18.33          3.0e-04
     Pdb:2CPY SOLUTION STRUCTURE OF RNA BINDING DOMAIN 3 IN RNA BINDING MO; PMID:;

NR homologs

No. Start End Identity% Coverage% Evalue

Notes: The reference system provides subject-oriented search and sequence-oriented search for reference collection. The reference filter supports the classification and selection of references. You can use a group of buttons to select references based on your interest or the relative level of references that are justified base on some criteria, e.g. trusted or high similairties. By deafult, PSCA shows the references whose levels are better than gathering or high similarity of reference classification.

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