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   BC039315;KN.B21279A.EFCAB6
Protein Sequence Comparative Analysis   (PSCA)
 
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BC039315    REFERENCE SYSTEM

Accession: BC039315
Description: BC039315 Homo sapiens EF-hand calcium binding domain 6, mRNA (cDNA clone MGC:39806 IMAGE:5297436), complete cds, coding region:266-4315
Organism: HOMO SAPIENS
Keyword: BC039315 Homo sapiens EF-hand calcium binding domain 6, mRNA (cDNA clone MGC:39806 IMAGE:5297436), complete cds, coding region:266-4315

  

References           
PMID Filter
     Deleting genome references          
     Reference classification      Trusted or extreme similarity       Gathering or high similarity       Noise or low similarity
 
Sequence reference                    
   SP-EMBL: ;  PMID:;
   GenBank: ;  PMID:;
Family annotation                  
1.          trusted          evalue:6.1e-93
    Pfam:PF08976   Domain of unknown function (DUF1880);  PMID:;
2.          trusted          evalue:1.5e-24
    Pfam:v3_1_0:1hqvA00   0;  PMID:;
3.          trusted          evalue:1.3e-22
    Pfam:v3_1_0:1k94A00   0;  PMID:;
4.          trusted          evalue:1.4e-21
    Pfam:v3_1_0:1np8A00   0;  PMID:;
5.          trusted          evalue:1.2e-19
    Pfam:v3_1_0:1yr5A00   0;  PMID:;
6.          trusted          evalue:1.1e-17
    Pfam:v3_1_0:1auiB00   0;  PMID:;
7.          trusted          evalue:2.5e-18
    Pfam:v3_1_0:1qv0A00   0;  PMID:;
8.          trusted          evalue:2.8e-18
    Pfam:v3_1_0:1xo5B00   0;  PMID:;
9.          trusted          evalue:1.0e-16
    Pfam:v3_1_0:1uhnA00   0;  PMID:;
10.          trusted          evalue:2.1e-16
    Pfam:v3_1_0:2sas000   0;  PMID:;
11.          trusted          evalue:3.2e-16
    Pfam:v3_1_0:1s6cA00   0;  PMID:;
12.          trusted          evalue:5.2e-15
    Pfam:v3_1_0:1nyaA00   0;  PMID:;
13.          trusted          evalue:2.5e-14
    Pfam:v3_1_0:2scpA00   0;  PMID:;
14.          trusted          evalue:6.4e-16
    Pfam:v3_1_0:2pvbA00   0;  PMID:;
15.          trusted          evalue:3.4e-15
    Pfam:v3_1_0:1s6iA02   0;  PMID:;
16.          trusted          evalue:3.9e-11
    Pfam:v3_1_0:1g33A00   0;  PMID:;
17.          trusted          evalue:3.6e-11
    Pfam:v3_1_0:1qtxA02   0;  PMID:;
18.          trusted          evalue:2.4e-11
    Pfam:v3_1_0:2f3yA02   0;  PMID:;
19.          trusted          evalue:1.7e-11
    Pfam:v3_1_0:1exrA02   0;  PMID:;
20.          trusted          evalue:1.3e-11
    Pfam:v3_1_0:1m45A02   0;  PMID:;
21.          trusted          evalue:2.6e-11
    Pfam:v3_1_0:1dtlA02   0;  PMID:;
22.          trusted          evalue:6.4e-11
    Pfam:v3_1_0:1tizA00   0;  PMID:;
23.          trusted          evalue:6.1e-11
    Pfam:v3_1_0:1k90E01   0;  PMID:;
24.          trusted          evalue:1.1e-10
    Pfam:v3_1_0:1ggzA01   0;  PMID:;
25.          trusted          evalue:1.5e-10
    Pfam:v3_1_0:1exrA01   0;  PMID:;
26.          trusted          evalue:2.1e-10
    Pfam:v3_1_0:1g4yR01   0;  PMID:;
27.          trusted          evalue:1.0e-09
    Pfam:v3_1_0:1ncx001   0;  PMID:;
28.          trusted          evalue:8.0e-10
    Pfam:v3_1_0:1jfjA01   0;  PMID:;
29.          trusted          evalue:3.6e-10
    Pfam:v3_1_0:1top002   0;  PMID:;
30.          trusted          evalue:3.9e-09
    Pfam:v3_1_0:1fi5A00   0;  PMID:;
31.          trusted          evalue:6.6e-10
    Pfam:v3_1_0:1wrkA00   0;  PMID:;
32.          trusted          evalue:1.8e-09
    Pfam:v3_1_0:1pmzC00   0;  PMID:;
33.          trusted          evalue:4.1e-10
    Pfam:v3_1_0:1xk4E00   0;  PMID:;
34.          trusted          evalue:2.5e-09
    Pfam:v3_1_0:1omrA01   0;  PMID:;
35.          trusted          evalue:2.6e-09
    Pfam:v3_1_0:1wdcB02   0;  PMID:;
36.          trusted          evalue:8.7e-09
    Pfam:v3_1_0:1g8iB02   0;  PMID:;
37.          trusted          evalue:8.6e-10
    Pfam:v3_1_0:1omrA02   0;  PMID:;
38.          trusted          evalue:1.0e-08
    Pfam:v3_1_0:1s26D01   0;  PMID:;
39.          trusted          evalue:6.2e-09
    Pfam:v3_1_0:1xk4D00   0;  PMID:;
40.          trusted          evalue:3.1e-09
    Pfam:v3_1_0:1jbaA01   0;  PMID:;
41.          trusted          evalue:1.2e-08
    Pfam:v3_1_0:1wdcB01   0;  PMID:;
42.          trusted          evalue:2.1e-08
    Pfam:v3_1_0:1qx2A00   0;  PMID:;
43.          trusted          evalue:2.1e-08
    Pfam:v3_1_0:1m45A01   0;  PMID:;
44.          trusted          evalue:1.0e-07
    Pfam:v3_1_0:1a4pA00   0;  PMID:;
45.          trusted          evalue:9.5e-08
    Pfam:v3_1_0:1jfjA02   0;  PMID:;
46.          trusted          evalue:1.9e-07
    Pfam:v3_1_0:1wdcC01   0;  PMID:;
47.          trusted          evalue:1.1e-07
    Pfam:v3_1_0:1k8uA00   0;  PMID:;
48.          trusted          evalue:4.1e-06
    Pfam:v3_1_0:1c07A00   0;  PMID:;
49.          trusted          evalue:8.6e-06
    Pfam:v3_1_0:1fi6A00   0;  PMID:;
50.          noise          evalue:8.2e-03
    Pfam:PF00036   EF hand;  PMID:1602495,1618836,2401372,7743133;
51.          trusted          evalue:3.2e-05
    Pfam:v3_1_0:1snlA00   0;  PMID:;
52.          trusted          evalue:9.7e-05
    Pfam:v3_1_0:1qjtA00   0;  PMID:;
 
PDB similairty                    
No.    Start    End    Identity%    Coverage%    Evalue
1.          1008          1108          99          7.41          1.0e-52
     Pdb:1WLZ CRYSTAL STRUCTURE OF DJBP FRAGMENT WHICH WAS OBTAINED BY LIM; PMID:;
 
NR homologs                 
No.    Start    End    Identity%    Coverage%    Evalue
 

Notes: The reference system provides subject-oriented search and sequence-oriented search for reference collection. The reference filter supports the classification and selection of references. You can use a group of buttons to select references based on your interest or the relative level of references that are justified base on some criteria, e.g. trusted or high similairties. By deafult, PSCA shows the references whose levels are better than gathering or high similarity of reference classification.

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