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   BC030493;WS20613E
Protein Sequence Comparative Analysis   (PSCA)
 
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BC030493    REFERENCE SYSTEM

Accession: BC030493
Description: BC030493 Mus musculus RNA binding motif protein 39, mRNA (cDNA clone MGC:40964 IMAGE:5400675), complete cds, coding region:452-1555
Organism: MUS MUSCULUS
Keyword: BC030493 Mus musculus RNA binding motif protein 39, mRNA (cDNA clone MGC:40964 IMAGE:5400675), complete cds, coding region:452-1555

  

References           
PMID Filter
     Deleting genome references          
     Reference classification      Trusted or extreme similarity       Gathering or high similarity       Noise or low similarity
 
Sequence reference                    
   SP-EMBL: ;  PMID:;
   GenBank: ;  PMID:;
Family annotation                  
1.          trusted          evalue:7.3e-31
    Pfam:PF00076   RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain);  PMID:8290338;
2.          trusted          evalue:6.2e-29
    Pfam:v3_1_0:1rk8A00   0;  PMID:;
3.          trusted          evalue:1.2e-25
    Pfam:v3_1_0:1cvjG02   0;  PMID:;
4.          trusted          evalue:7.7e-27
    Pfam:v3_1_0:1sxl000   0;  PMID:;
5.          trusted          evalue:4.8e-25
    Pfam:v3_1_0:1p1tA00   0;  PMID:;
6.          trusted          evalue:4.1e-26
    Pfam:v3_1_0:1l3kA01   0;  PMID:;
7.          trusted          evalue:2.2e-25
    Pfam:v3_1_0:1n54B00   0;  PMID:;
8.          trusted          evalue:3.5e-27
    Pfam:v3_1_0:1h2vZ00   0;  PMID:;
9.          trusted          evalue:1.8e-25
    Pfam:v3_1_0:2u2fA00   0;  PMID:;
10.          trusted          evalue:2.1e-24
    Pfam:v3_1_0:1cvjA01   0;  PMID:;
11.          trusted          evalue:1.9e-24
    Pfam:v3_1_0:1hl6C00   0;  PMID:;
12.          trusted          evalue:2.7e-23
    Pfam:v3_1_0:1s79A00   0;  PMID:;
13.          trusted          evalue:3.0e-25
    Pfam:v3_1_0:1jmtA00   0;  PMID:;
14.          trusted          evalue:1.9e-25
    Pfam:v3_1_0:1nu4A00   0;  PMID:;
15.          trusted          evalue:5.0e-24
    Pfam:v3_1_0:1fjeB01   0;  PMID:;
16.          trusted          evalue:3.3e-23
    Pfam:v3_1_0:1x5uA01   0;  PMID:;
17.          trusted          evalue:2.0e-23
    Pfam:v3_1_0:1fxlA02   0;  PMID:;
18.          trusted          evalue:2.6e-24
    Pfam:v3_1_0:1no8A00   0;  PMID:;
19.          trusted          evalue:9.5e-23
    Pfam:v3_1_0:1oiaB00   0;  PMID:;
20.          trusted          evalue:1.0e-23
    Pfam:v3_1_0:1l3kA02   0;  PMID:;
21.          trusted          evalue:6.7e-23
    Pfam:v3_1_0:2hzcA00   0;  PMID:;
22.          trusted          evalue:6.4e-22
    Pfam:v3_1_0:1fxlA01   0;  PMID:;
23.          trusted          evalue:6.9e-24
    Pfam:v3_1_0:1qm9A01   0;  PMID:;
24.          trusted          evalue:1.2e-22
    Pfam:v3_1_0:1fjeB02   0;  PMID:;
25.          trusted          evalue:3.1e-21
    Pfam:v3_1_0:1o0pA00   0;  PMID:;
26.          trusted          evalue:1.4e-20
    Pfam:v3_1_0:1sjrA00   0;  PMID:;
27.          trusted          evalue:3.9e-21
    Pfam:v3_1_0:1qm9A02   0;  PMID:;
28.          trusted          evalue:4.1e-20
    Pfam:v3_1_0:2u1a000   0;  PMID:;
29.          trusted          evalue:3.8e-16
    Pfam:v3_1_0:1cvjH02   0;  PMID:;
30.          trusted          evalue:1.6e-15
    Pfam:v3_1_0:3sxlA02   0;  PMID:;
31.          trusted          evalue:2.5e-13
    Pfam:v3_1_0:1whvA00   0;  PMID:;
 
PDB similairty                    
No.    Start    End    Identity%    Coverage%    Evalue
1.          254          367          100          30.79          2.0e-65
     Pdb:4OZ1 CRYSTAL STRUCTURE OF HUMAN CAPERALPHA UHM BOUND TO SF3B155 U; PMID:;
     Pdb:4OZ0 CRYSTAL STRUCTURE OF HUMAN CAPERALPHA U2AF HOMOLOGY MOTIF (A; PMID:;
2.          255          367          100          30.52          6.0e-65
     Pdb:2LQ5 NMR STRUCTURE OF THE RNA BINDING MOTIF 39 (RBM39) FROM MUS M; PMID:;
3.          255          367          100          30.52          7.0e-65
     Pdb:3S6E CRYSTAL STRUCTURE OF A RNA BINDING MOTIF PROTEIN 39 (RBM39) ; PMID:;
     Pdb:4J5O ROOM TEMPERATURE CRYSTAL STRUCTURE OF A RNA BINDING MOTIF PR; PMID:;
4.          255          367          99          30.52          6.0e-64
     Pdb:4RU2 CRYSTAL STRUCTURE OF A RNA-BINDING PROTEIN 39 (RBM39) IN COM; PMID:;
     Pdb:5CXT CRYSTAL STRUCTURE OF A RNA-BINDING PROTEIN 39 (RBM39) IN COM; PMID:;
5.          78          174          100          26.16          3.0e-52
     Pdb:2JRS SOLUTION NMR STRUCTURE OF CAPER RRM2 DOMAIN. NORTHEAST STRUC; PMID:;
6.          88          180          80          25.07          4.0e-38
     Pdb:2DNZ SOLUTION STRUCTURE OF THE SECOND RNA BINDING DOMAIN OF RNA B; PMID:;
7.          1          77          100          20.71          7.0e-37
     Pdb:2MHN NMR STRUCTURE OF THE FIRST RRM DOMAIN OF THE PROTEIN RBM39 F; PMID:;
8.          1          77          100          20.71          7.0e-37
     Pdb:4YUD CRYSTAL STRUCTURE OF A RNA BINDING MOTIF PROTEIN 39 (RBM39) ; PMID:;
9.          1          77          89          20.71          4.0e-33
     Pdb:2CQ4 SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN RNA BINDING MOTI; PMID:;
10.          12          167          28          42.23          3.0e-16
     Pdb:3UWT CRYSTAL STRUCTURE OF A RNA BINDING DOMAIN OF POLY-U BINDING ; PMID:;
11.          12          167          28          42.23          4.0e-16
     Pdb:2KXH SOLUTION STRUCTURE OF THE FIRST TWO RRM DOMAINS OF FIR IN TH; PMID:;
     Pdb:2KXF SOLUTION STRUCTURE OF THE FIRST TWO RRM DOMAINS OF FBP-INTER; PMID:;
12.          12          167          28          42.23          6.0e-16
     Pdb:2QFJ CRYSTAL STRUCTURE OF FIRST TWO RRM DOMAINS OF FIR BOUND TO S; PMID:;
13.          12          167          27          42.23          1.0e-13
     Pdb:3MD3 CRYSTAL STRUCTURE OF THE FIRST TWO RRM DOMAINS OF YEAST POLY; PMID:;
14.          12          174          32          44.14          1.0e-11
     Pdb:1CVJ X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN CO; PMID:10499800;
15.          12          174          32          44.14          1.0e-11
     Pdb:4F02 CRYSTAL STRUCTURE OF THE PABP-BINDING SITE OF EIF4G IN COMPL; PMID:;
16.          12          153          27          38.42          2.0e-11
     Pdb:1HA1 HNRNP A1 (RBD1,2) FROM HOMO SAPIENS ; PMID:8130198;
17.          12          153          27          38.42          2.0e-11
     Pdb:1UP1 UP1, THE TWO RNA-RECOGNITION MOTIF DOMAIN OF HNRNP A1 ; PMID:9115444;
18.          12          153          27          38.42          2.0e-11
     Pdb:1PO6 CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TAGG(6MI)TTAGGG): ; PMID:12904298;
     Pdb:2UP1 STRUCTURE OF UP1-TELOMERIC DNA COMPLEX ; PMID:10323862;
19.          12          180          27          45.78          2.0e-11
     Pdb:1U1O CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTTAG(DI)G); ; PMID:15342234;
     Pdb:1U1P CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTTA 2PR GG);; PMID:15342234;
     Pdb:1U1L CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTT PRN GGG);; PMID:15342234;
     Pdb:1L3K UP1, THE TWO RNA-RECOGNITION MOTIF DOMAIN OF HNRNP A1 ; PMID:11917013;
     Pdb:1U1K CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTT 7DA GGG);; PMID:15342234;
     Pdb:1U1N CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTTA (PRN) GG; PMID:15342234;
     Pdb:1U1M CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTTA 7GU GG);; PMID:15342234;
     Pdb:1U1Q CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTTA(DI)GG); ; PMID:15342234;
     Pdb:1U1R CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTTAG(2PR) G); PMID:15342234;
20.          12          180          27          45.78          2.0e-11
     Pdb:1PGZ CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTTAG(6-MI) G; PMID:12904298;
21.          12          180          27          45.78          3.0e-11
     Pdb:2LYV SOLUTION STRUCTURE OF THE TWO RRM DOMAINS OF HNRNP A1 (UP1) ; PMID:;
22.          3          166          25          44.41          9.0e-11
     Pdb:2MJN STRUCTURE, DYNAMICS AND RNA BINDING OF THE MULTI-DOMAIN SPLI; PMID:;
23.          95          168          40          19.89          1.0e-10
     Pdb:1P1T NMR STRUCTURE OF THE N-TERMINAL RRM DOMAIN OF CLEAVAGE STIMU; PMID:12773396;
24.          92          172          39          21.80          1.0e-10
     Pdb:2MPU STRUCTURAL AND FUNCTIONAL ANALYSIS OF THE HORDEUM VULGARE L.; PMID:;
25.          91          179          37          23.98          2.0e-10
     Pdb:2X1A STRUCTURE OF RNA15 RRM WITH RNA BOUND (G) ; PMID:;
     Pdb:2X1B STRUCTURE OF RNA15 RRM ; PMID:;
26.          94          180          35          23.43          3.0e-10
     Pdb:1X5S SOLUTION STRUCTURE OF RRM DOMAIN IN A18 HNRNP ; PMID:;
27.          86          175          34          24.25          6.0e-10
     Pdb:2RNE SOLUTION STRUCTURE OF THE SECOND RNA RECOGNITION MOTIF (RRM); PMID:;
     Pdb:2DGO SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN IN CYTOTOXIC GR; PMID:;
28.          93          180          40          23.71          1.0e-09
     Pdb:2D9P SOLUTION STRUCTURE OF RNA BINDING DOMAIN 4 IN POLYADENYLATIO; PMID:;
29.          94          172          39          21.25          1.0e-09
     Pdb:4C7Q SOLUTION STRUCTURE OF THE NT. GR-RBP1 RRM DOMAIN ; PMID:;
30.          92          179          37          23.71          1.0e-09
     Pdb:2X1F STRUCTURE OF RNA15 RRM WITH BOUND RNA (GU) ; PMID:;
31.          95          166          37          19.35          1.0e-09
     Pdb:3MD1 CRYSTAL STRUCTURE OF THE SECOND RRM DOMAIN OF YEAST POLY(U)-; PMID:;
32.          92          168          38          20.71          2.0e-09
     Pdb:2KM8 INTERDOMAIN RRM PACKING CONTRIBUTES TO RNA RECOGNITION IN TH; PMID:;
33.          92          171          37          21.53          2.0e-09
     Pdb:2MB0 SOLUTION STRUCTURE OF HNRNP G RRM IN COMPLEX WITH THE RNA 5'; PMID:;
 
NR homologs                 
No.    Start    End    Identity%    Coverage%    Evalue
 

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