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   BC011564;RF20603A.DAX1
Protein Sequence Comparative Analysis   (PSCA)
 
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BC011564    REFERENCE SYSTEM

Accession: BC011564
Description: BC011564 Homo sapiens nuclear receptor subfamily 0, group B, member 1, mRNA (cDNA clone MGC:20161 IMAGE:4637694), complete cds, coding region:13-1425
Organism: HOMO SAPIENS
Keyword: BC011564 Homo sapiens nuclear receptor subfamily 0, group B, member 1, mRNA (cDNA clone MGC:20161 IMAGE:4637694), complete cds, coding region:13-1425

  

References           
PMID Filter
     Deleting genome references          
     Reference classification      Trusted or extreme similarity       Gathering or high similarity       Noise or low similarity
 
Sequence reference                    
   SP-EMBL: ;  PMID:;
   GenBank: ;  PMID:;
Family annotation                  
1.          trusted          evalue:7.9e-52
    Pfam:v3_1_0:1g2nA00   0;  PMID:;
2.          trusted          evalue:1.2e-50
    Pfam:v3_1_0:1ymtA00   0;  PMID:;
3.          trusted          evalue:7.4e-49
    Pfam:v3_1_0:2gpuA00   0;  PMID:;
4.          trusted          evalue:1.3e-49
    Pfam:v3_1_0:1mznA00   0;  PMID:;
5.          trusted          evalue:5.6e-46
    Pfam:v3_1_0:2h79A00   0;  PMID:;
6.          trusted          evalue:3.3e-46
    Pfam:v3_1_0:1pzlA00   0;  PMID:;
7.          trusted          evalue:7.6e-46
    Pfam:v3_1_0:1ie9A00   0;  PMID:;
8.          trusted          evalue:5.6e-46
    Pfam:v3_1_0:1fcyA00   0;  PMID:;
9.          trusted          evalue:2.4e-44
    Pfam:v3_1_0:1pq9B00   0;  PMID:;
10.          trusted          evalue:1.3e-42
    Pfam:v3_1_0:1oshA00   0;  PMID:;
11.          trusted          evalue:5.6e-40
    Pfam:PF00104   Ligand-binding domain of nuclear hormone receptor;  PMID:9600906;
12.          trusted          evalue:8.4e-42
    Pfam:v3_1_0:2ax6A00   0;  PMID:;
13.          trusted          evalue:9.4e-43
    Pfam:v3_1_0:1nrlB00   0;  PMID:;
14.          trusted          evalue:4.5e-38
    Pfam:v3_1_0:1xpcA00   0;  PMID:;
15.          trusted          evalue:7.6e-39
    Pfam:v3_1_0:1r1kD00   0;  PMID:;
16.          trusted          evalue:4.7e-33
    Pfam:v3_1_0:1ovlB00   0;  PMID:;
17.          trusted          evalue:1.8e-31
    Pfam:v3_1_0:1nq7A00   0;  PMID:;
18.          trusted          evalue:1.9e-28
    Pfam:v3_1_0:2awhB00   0;  PMID:;
 
PDB similairty                    
No.    Start    End    Identity%    Coverage%    Evalue
1.          203          470          68          56.81          2.0e-99
     Pdb:3F5C STRUCTURE OF DAX-1:LRH-1 COMPLEX ; PMID:;
2.          207          469          36          55.74          2.0e-30
     Pdb:4NUF CRYSTAL STRUCTURE OF SHP/EID1 ; PMID:;
3.          254          462          29          44.26          4.0e-16
     Pdb:3P0U CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF HUMAN TEST; PMID:;
4.          254          466          26          45.11          1.0e-13
     Pdb:4LOG THE CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR PNR LIG; PMID:;
5.          240          468          24          48.51          4.0e-12
     Pdb:3CJW CRYSTAL STRUCTURE OF THE HUMAN COUP-TFII LIGAND BINDING DOMA; PMID:;
6.          254          466          25          45.11          6.0e-12
     Pdb:4OZT CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAINS OF THE BOVIC; PMID:;
7.          254          466          25          45.11          8.0e-12
     Pdb:1Z5X HEMIPTERAN ECDYSONE RECEPTOR LIGAND-BINDING DOMAIN COMPLEXED; PMID:;
8.          254          466          26          45.11          9.0e-12
     Pdb:2NXX CRYSTAL STRUCTURE OF THE LIGAND-BINDING DOMAINS OF THE T.CAS; PMID:;
9.          254          466          25          45.11          1.0e-11
     Pdb:4OZR CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAINS OF THE BOVIC; PMID:;
10.          231          466          24          50.00          3.0e-11
11.          240          466          27          48.09          4.0e-11
     Pdb:4IQR MULTI-DOMAIN ORGANIZATION OF THE HNF4ALPHA NUCLEAR RECEPTOR ; PMID:;
12.          222          466          24          51.91          8.0e-11
13.          240          467          27          48.30          5.0e-10
     Pdb:4B7W LIGAND BINDING DOMAIN HUMAN HEPATOCYTE NUCLEAR FACTOR 4ALPHA; PMID:;
14.          240          467          27          48.30          6.0e-10
     Pdb:1PZL CRYSTAL STRUCTURE OF HNF4A LBD IN COMPLEX WITH THE LIGAND AN; PMID:;
15.          222          466          24          51.91          6.0e-10
     Pdb:1LBD LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR- ALP; PMID:8548460,7760929,7501014;
16.          240          467          27          48.30          7.0e-10
     Pdb:3FS1 CRYSTAL STRUCTURE OF HNF4A LBD IN COMPLEX WITH THE LIGAND AN; PMID:;
17.          222          466          24          51.91          7.0e-10
     Pdb:4OC7 RETINOIC ACID RECEPTOR ALPHA IN COMPLEX WITH (E)-3-(3'-ALLYL; PMID:;
18.          222          466          24          51.91          1.0e-09
     Pdb:1FBY CRYSTAL STRUCTURE OF THE HUMAN RXR ALPHA LIGAND BINDING DOMA; PMID:10835357;
19.          222          466          24          51.91          1.0e-09
     Pdb:1G5Y THE 2.0 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE RXRALPH; PMID:10970886,10882139;
     Pdb:3OZJ CRYSTAL STRUCTURE OF HUMAN RETINOIC X RECEPTOR ALPHA COMPLEX; PMID:;
     Pdb:1K74 THE 2.3 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETEROD; PMID:11698662;
     Pdb:1FM6 THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETEROD; PMID:10882139;
     Pdb:1G1U THE 2.5 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE RXRALPH; PMID:10970886,10882139;
     Pdb:1FM9 THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETEROD; PMID:10882139;
     Pdb:2ACL LIVER X-RECEPTOR ALPHA LIGAND BINDING DOMAIN WITH SB313987 ; PMID:16107141;
20.          222          466          24          51.91          1.0e-09
     Pdb:2ZY0 CRYSTAL STRUCTURE OF THE HUMAN RXR ALPHA LIGAND BINDING DOMA; PMID:;
     Pdb:3R5M CRYSTAL STRUCTURE OF RXRALPHALBD COMPLEXED WITH THE AGONIST ; PMID:;
     Pdb:1MVC CRYSTAL STRUCTURE OF THE HUMAN RXR ALPHA LIGAND BINDING DOMA; PMID:11981034;
     Pdb:3NSP CRYSTAL STRUCTURE OF TETRAMERIC RXRALPHA-LBD ; PMID:;
     Pdb:1MV9 CRYSTAL STRUCTURE OF THE HUMAN RXR ALPHA LIGAND BINDING DOMA; PMID:11981034;
     Pdb:1MZN CRYSTAL STRUCTURE AT 1.9 ANGSTROEMS RESOLUTION OF THE HOMODI; PMID:11981034,10835357;
     Pdb:2P1V CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF THE RETINO; PMID:;
     Pdb:2P1T CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF THE RETINO; PMID:;
     Pdb:3FUG CRYSTAL STRUCTURE OF THE RETINOID X RECEPTOR LIGAND BINDING ; PMID:;
     Pdb:3NSQ CRYSTAL STRUCTURE OF TETRAMERIC RXRALPHA-LBD COMPLEXED WITH ; PMID:;
     Pdb:3R29 CRYSTAL STRUCTURE OF RXRALPHA LIGAND-BINDING DOMAIN COMPLEXE; PMID:;
     Pdb:2P1U CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF THE RETINO; PMID:;
     Pdb:2ZXZ CRYSTAL STRUCTURE OF THE HUMAN RXR ALPHA LIGAND BINDING DOMA; PMID:;
     Pdb:3R2A CRYSTAL STRUCTURE OF RXRALPHA LIGAND-BINDING DOMAIN COMPLEXE; PMID:;
21.          222          466          24          51.91          1.0e-09
     Pdb:3FC6 HRXRALPHA & MLXRALPHA WITH AN INDOLE PHARMACOPHORE, SB786875; PMID:;
     Pdb:3FAL HUMANRXR ALPHA & MOUSE LXR ALPHA COMPLEXED WITH RETENOIC ACI; PMID:;
     Pdb:1RDT CRYSTAL STRUCTURE OF A NEW REXINOID BOUND TO THE RXRALPHA LI; PMID:;
22.          222          466          24          51.91          1.0e-09
23.          222          466          24          51.91          1.0e-09
24.          222          466          24          51.91          1.0e-09
25.          222          466          24          51.91          1.0e-09
     Pdb:3KWY CRYSTAL STRUCTURE OF RXRALPHA LIGAND BINDING DOMAIN IN COMPL; PMID:;
     Pdb:4N8R CRYSTAL STRUCTURE OF RXRA LBD COMPLEXED WITH A SYNTHETIC MOD; PMID:;
     Pdb:4N5G CRYSTAL STRUCTURE OF RXRA LBD COMPLEXED WITH A SYNTHETIC MOD; PMID:;
     Pdb:3E94 CRYSTAL STRUCTURE OF RXRALPHA LIGAND BINDING DOMAIN IN COMPL; PMID:;
26.          222          466          24          51.91          1.0e-09
     Pdb:3A9E CRYSTAL STRUCTURE OF A MIXED AGONIST-BOUND RAR-ALPHA AND ANT; PMID:;
27.          222          466          24          51.91          1.0e-09
     Pdb:4RMC CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4K6I CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4M8H CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4M8E CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4POJ CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4K4J CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4POH CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4RFW CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4PP3 CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4PP5 CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
28.          222          466          24          51.91          1.0e-09
     Pdb:3PCU CRYSTAL STRUCTURE OF HUMAN RETINOIC X RECEPTOR ALPHA LIGAND-; PMID:;
29.          222          466          24          51.91          1.0e-09
30.          222          466          24          51.91          1.0e-09
     Pdb:4J5W CRYSTAL STRUCTURE OF THE APO-PXR/RXRALPHA LBD HETEROTETRAMER; PMID:;
     Pdb:4J5X CRYSTAL STRUCTURE OF THE SR12813-BOUND PXR/RXRALPHA LBD HETE; PMID:;
31.          254          466          24          45.11          1.0e-09
32.          222          466          24          51.91          2.0e-09
     Pdb:1DKF CRYSTAL STRUCTURE OF A HETERODIMERIC COMPLEX OF RAR AND RXR ; PMID:10882070;
33.          222          466          24          51.91          2.0e-09
     Pdb:3H0A CRYSTAL STRUCTURE OF PEROXISOME PROLIFERATOR-ACTIVATED RECEP; PMID:;
34.          254          466          24          45.11          2.0e-09
     Pdb:1UHL CRYSTAL STRUCTURE OF THE LXRALFA-RXRBETA LBD HETERODIMER ; PMID:;
35.          254          466          24          45.11          3.0e-09
     Pdb:3EYB STRUCTURAL AND FUNCTIONAL INSIGHTS INTO THE LIGAND BINDING D; PMID:;
36.          254          468          24          45.53          4.0e-09
     Pdb:2Q60 CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF POLYANDROC; PMID:;
37.          254          468          25          45.53          6.0e-09
     Pdb:2GL8 HUMAN RETINOIC ACID RECEPTOR RXR-GAMMA LIGAND-BINDING DOMAIN; PMID:;
38.          223          466          25          51.70          2.0e-08
     Pdb:1LV2 HEPATOCYTE NUCLEAR FACTOR 4 IS A TRANSCRIPTION FACTOR THAT C; PMID:12220494;
39.          254          449          24          41.49          2.0e-08
     Pdb:1HG4 ULTRASPIRACLE LIGAND BINDING DOMAIN FROM DROSOPHILA MELANOGA; PMID:11171988;
40.          253          469          23          45.96          8.0e-08
     Pdb:3TX7 CRYSTAL STRUCTURE OF LRH-1/BETA-CATENIN COMPLEX ; PMID:;
41.          253          469          23          45.96          2.0e-07
     Pdb:1YUC HUMAN NUCLEAR RECEPTOR LIVER RECEPTOR HOMOLOGUE-1, LRH-1, BO; PMID:;
     Pdb:4DOR HUMAN NUCLEAR RECEPTOR LIVER RECEPTOR HOMOLOGUE-1, LRH-1, IN; PMID:;
42.          253          469          23          45.96          2.0e-07
     Pdb:3PLZ HUMAN LRH1 LBD BOUND TO GR470 ; PMID:;
43.          253          469          23          45.96          2.0e-07
     Pdb:4RWV CRYSTAL STRUCTURE OF PIP3 BOUND HUMAN NUCLEAR RECEPTOR LRH-1; PMID:;
44.          253          469          23          45.96          2.0e-07
     Pdb:4ONI STRUCTURE OF HUMAN ORPHAN RECEPTOR LRH1 BOUND TO TWO BACTERI; PMID:;
45.          253          469          23          45.96          3.0e-07
     Pdb:1ZDU THE CRYSTAL STRUCTURE OF HUMAN LIVER RECEPTOR HOMOLOGUE-1 ; PMID:;
46.          253          469          23          45.96          3.0e-07
     Pdb:1YOK CRYSTAL STRUCTURE OF HUMAN LRH-1 BOUND WITH TIF-2 PEPTIDE AN; PMID:;
47.          253          466          22          45.32          6.0e-07
     Pdb:4DOS HUMAN NUCLEAR RECEPTOR LIVER RECEPTOR HOMOLOGUE-1, LRH-1, BO; PMID:;
48.          244          469          23          47.87          2.0e-06
     Pdb:1PK5 CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR LRH-1 ; PMID:12820970;
     Pdb:3F5C STRUCTURE OF DAX-1:LRH-1 COMPLEX ; PMID:;
 
NR homologs                 
No.    Start    End    Identity%    Coverage%    Evalue
1.          1          470          100          99.79          0.0e+00
2.          1          470          100          99.79          0.0e+00
3.          1          470          99          99.79          0.0e+00
4.          1          470          99          99.79          0.0e+00
5.          1          460          99          97.66          0.0e+00
6.          1          470          98          99.79          0.0e+00
7.          1          470          97          99.79          0.0e+00
8.          1          470          97          99.79          0.0e+00
9.          1          470          97          99.79          0.0e+00
10.          1          470          94          99.79          0.0e+00
11.          1          470          78          99.79          0.0e+00
12.          1          470          77          99.79          0.0e+00
13.          1          389          75          82.55          0.0e+00
14.          1          470          74          99.79          0.0e+00
15.          1          470          73          99.79          0.0e+00
16.          1          470          65          99.79          0.0e+00
17.          1          470          64          99.79          0.0e+00
18.          200          470          60          57.45          3.0e-82
19.          200          470          53          57.45          1.0e-69
20.          198          470          51          57.87          2.0e-60
21.          204          469          47          56.38          2.0e-57
22.          204          469          47          56.38          1.0e-56
23.          248          465          51          46.17          7.0e-53
24.          240          349          88          23.19          4.0e-48
25.          246          389          68          30.43          5.0e-46
26.          242          466          41          47.66          3.0e-42
27.          199          469          40          57.45          2.0e-41
28.          244          469          39          47.87          1.0e-38
29.          244          469          42          47.87          3.0e-38
30.          244          466          39          47.23          4.0e-38
31.          199          466          33          56.81          3.0e-34
32.          244          470          38          48.09          6.0e-34
33.          244          466          39          47.23          1.0e-33
34.          244          466          39          47.23          1.0e-33
35.          244          466          39          47.23          3.0e-33
36.          244          466          38          47.23          7.0e-33
37.          391          470          86          16.81          1.0e-32
38.          227          466          36          50.85          5.0e-30
39.          226          466          36          51.06          3.0e-29
40.          244          466          36          47.23          4.0e-29
41.          375          461          73          18.30          4.0e-28
42.          383          452          81          14.68          5.0e-25
43.          241          371          48          27.66          4.0e-23
44.          3          98          58          20.21          2.0e-19
45.          246          466          29          46.81          2.0e-18
46.          254          465          27          44.89          5.0e-17
47.          254          466          29          45.11          7.0e-17
48.          254          466          29          45.11          7.0e-17
49.          254          466          29          45.11          7.0e-17
50.          254          466          29          45.11          7.0e-17
51.          254          466          29          45.11          7.0e-17
52.          254          466          29          45.11          7.0e-17
53.          254          466          29          45.11          7.0e-17
54.          254          466          29          45.11          7.0e-17
55.          254          466          29          45.11          7.0e-17
56.          254          466          29          45.11          7.0e-17
57.          254          466          29          45.11          7.0e-17
58.          254          466          29          45.11          7.0e-17
59.          254          466          29          45.11          7.0e-17
60.          254          466          29          45.11          9.0e-17
61.          254          466          29          45.11          1.0e-16
62.          254          466          29          45.11          2.0e-16
63.          254          466          28          45.11          2.0e-16
64.          254          462          29          44.26          3.0e-16
     gi|21310109|gb|AAM46150.1| nuclear orphan receptor TR2/4 ;  PMID:;
65.          254          462          30          44.26          4.0e-16
66.          254          462          30          44.26          4.0e-16
67.          254          465          26          44.89          2.0e-15
68.          254          466          28          45.11          3.0e-15
69.          254          466          28          45.11          6.0e-15
70.          245          465          26          46.81          6.0e-15
71.          254          466          28          45.11          1.0e-14
72.          254          462          28          44.26          1.0e-14
73.          254          462          28          44.26          1.0e-14
74.          254          462          28          44.26          1.0e-14
75.          254          462          28          44.26          1.0e-14
76.          254          462          28          44.26          2.0e-14
77.          254          462          28          44.26          2.0e-14
     gi|912822|gb|AAB33314.1| type II zinc finger DNA bindin;  PMID:7841789;
     gi|2143463|pir||I54075 gene mTR2R1 protein - mouse ;  PMID:7841789;
78.          254          462          28          44.26          2.0e-14
79.          254          462          28          44.26          2.0e-14
80.          254          462          28          44.26          2.0e-14
81.          241          466          26          47.87          2.0e-14
82.          229          465          26          50.21          2.0e-14
83.          222          465          23          51.70          2.0e-14
84.          249          465          26          45.96          3.0e-14
85.          229          465          26          50.21          3.0e-14
86.          254          462          28          44.26          4.0e-14
87.          254          462          27          44.26          4.0e-14
88.          254          462          27          44.26          5.0e-14
89.          229          465          26          50.21          5.0e-14
90.          229          465          26          50.21          5.0e-14
91.          254          462          28          44.26          7.0e-14
92.          254          462          27          44.26          9.0e-14
     gi|62859085|ref|NP_001016207.1| TR4 orphan receptor [Xenopus t;  PMID:;
93.          254          462          28          44.26          1.0e-13
94.          240          466          24          48.09          1.0e-13
     gi|1703646|gb|AAB37686.1| xCOUP-TF-B=proposed retinoid r;  PMID:8652410;
95.          240          466          24          48.09          2.0e-13
96.          254          462          27          44.26          3.0e-13
97.          254          466          27          45.11          3.0e-13
     gi|70907499|emb|CAH69897.1| retinoid X receptor [Blattella;  PMID:;
98.          254          466          27          45.11          3.0e-13
     gi|70907501|emb|CAH69898.1| retinoid X receptor [Blattella;  PMID:;
99.          238          465          25          48.30          3.0e-13
100.          254          466          25          45.11          3.0e-13
101.          254          466          25          45.11          3.0e-13
     gi|6094378|sp|Q06726|NR2F5_BRARE Nuclear receptor Nr2f5 (Steroi;  PMID:8467797;
     gi|296421|emb|CAA49781.1| spv 46 [Danio rerio] ;  PMID:8467797;
     gi|20589475|ref|NP_571261.1| nuclear receptor subfamily 2, ;  PMID:8467797;
     gi|486780|pir||S35334 steroid receptor protein svp46;  PMID:8467797;
102.          240          466          24          48.09          3.0e-13
103.          243          466          24          47.45          4.0e-13
     gi|104087|pir||S20617 transcription factor Coup - Af;  PMID:1536886;
     gi|64643|emb|CAA44806.1| Coup transcription factor [Xen;  PMID:1536886;
104.          240          466          24          48.09          6.0e-13
     gi|27924187|gb|AAH44975.1| Nr2f2-prov protein [Xenopus la;  PMID:;
105.          240          466          24          48.09          6.0e-13
     gi|482928|emb|CAA54096.1| ARP-1 [Mus musculus] ;  PMID:7947324;
106.          240          466          24          48.09          6.0e-13
     gi|32454395|gb|AAP82999.1| ovalbumin upstream promoter tr;  PMID:;
107.          240          466          24          48.09          6.0e-13
     gi|1311663|gb|AAA99309.1| Drosophila seven-up homolog/ma;  PMID:8541212;
     gi|24111246|ref|NP_571258.1| nuclear receptor subfamily 2, ;  PMID:8541212;
108.          240          466          24          48.09          6.0e-13
     gi|45598394|ref|NP_033827.2| nuclear receptor subfamily 2, ;  PMID:12614160,12385758,7947324,8183930;
     gi|114203|sp|P24468|COT2_HUMAN COUP transcription factor 2 (C;  PMID:1899293,12477932,1820218;
     gi|14149746|ref|NP_066285.1| nuclear receptor subfamily 2, ;  PMID:12843196,12614160,8530078,1899293,1820218;
     gi|15779213|gb|AAH14664.1| Nuclear receptor subfamily 2, ;  PMID:;
     gi|27781285|gb|AAH42897.1| Nuclear receptor subfamily 2, ;  PMID:12477932;
     gi|20832998|ref|XP_133568.1| (XM_133568) similar to nuclear;  PMID:;
     gi|466470|gb|AAA19854.1| COUP-TFII ;  PMID:8183930;
     gi|27503725|gb|AAH42484.1| Nuclear receptor subfamily 2, ;  PMID:12477932;
     gi|105357|pir||A37133 apolipoprotein A-I regulatory ;  PMID:1820218,1899293;
     gi|2137150|pir||I48975 apolipoprotein A-I regulatory ;  PMID:8183930,7947324;
     gi|46397833|sp|P43135|COT2_MOUSE COUP transcription factor 2 (C;  PMID:7947324;
     gi|179024|gb|AAA86429.1| apolipoprotein AI regulatory p;  PMID:1899293;
     gi|1575343|gb|AAB09475.1| apoliprotein AI regulatory pro;  PMID:;
109.          240          466          24          48.09          6.0e-13
     gi|3913114|sp|Q90733|COT2_CHICK COUP transcription factor 2 (C;  PMID:8119130;
     gi|2134377|pir||I50689 orphan receptor COUP-TFII - ch;  PMID:8119130;
     gi|392817|gb|AAA17733.1| orphan receptor COUP-TFII ;  PMID:8119130;
110.          240          466          24          48.09          6.0e-13
111.          240          466          24          48.09          6.0e-13
     gi|5870338|emb|CAB55624.1| COUP-TFII transcription factor;  PMID:;
     gi|27806025|ref|NP_776827.1| nuclear receptor subfamily 2, ;  PMID:;
     gi|10719969|sp|Q9TTR7|COT2_BOVIN COUP transcription factor 2 (C;  PMID:;
112.          240          466          24          48.09          6.0e-13
     gi|18158445|ref|NP_542956.1| nuclear receptor subfamily 2, ;  PMID:;
     gi|3913096|sp|O09018|COT2_RAT COUP transcription factor 2 (C;  PMID:;
     gi|2197125|gb|AAB61297.1| ovalbumin upstream promoter be;  PMID:;
113.          240          466          24          48.09          6.0e-13
114.          240          466          24          48.09          6.0e-13
115.          240          466          24          48.09          6.0e-13
116.          240          466          24          48.09          6.0e-13
117.          240          466          24          48.09          6.0e-13
118.          245          466          27          47.02          8.0e-13
119.          254          466          26          45.11          1.0e-12
     gi|33943178|gb|AAQ55293.1| nuclear receptor RXR-l [Locust;  PMID:;
120.          254          466          25          45.11          1.0e-12
     gi|103410|pir||A32693 steroid receptor protein svp 1;  PMID:2105166;
     gi|158519|gb|AAA62770.1| seven-up protein type 1 ;  PMID:2105166;
     gi|112858|sp|P16375|7UP1_DROME Steroid receptor seven-up, iso;  PMID:2105166,10731132;
     gi|17737921|ref|NP_524325.1| seven up CG11502-PB, isoform B;  PMID:10731132;
     gi|7299588|gb|AAF54773.1| CG11502-PB, isoform B [Drosoph;  PMID:10731132;
121.          254          466          25          45.11          1.0e-12
     gi|21744271|gb|AAM76194.1| RE08410p [Drosophila melanogas;  PMID:;
122.          254          466          25          45.11          1.0e-12
123.          254          466          24          45.11          1.0e-12
124.          254          466          24          45.11          1.0e-12
125.          240          466          24          48.09          1.0e-12
     gi|14090242|dbj|BAB55582.1| seven-up alpha [Bombyx mori] ;  PMID:11267900;
126.          241          468          23          48.30          1.0e-12
127.          254          462          26          44.26          2.0e-12
128.          254          466          25          45.11          2.0e-12
129.          240          466          24          48.09          2.0e-12
130.          240          466          24          48.09          2.0e-12
131.          240          466          24          48.09          2.0e-12
     gi|466468|gb|AAA19853.1| COUP-TFI ;  PMID:8183930;
     gi|80478748|gb|AAI08409.1| Nr2f1 protein [Mus musculus] ;  PMID:;
132.          240          466          24          48.09          2.0e-12
133.          240          466          24          48.09          2.0e-12
     gi|73952057|ref|XP_848884.1| PREDICTED: similar to COUP tra;  PMID:;
134.          240          466          24          48.09          2.0e-12
     gi|10719970|sp|Q9TTR8|COT1_BOVIN COUP transcription factor 1 (C;  PMID:;
     gi|5870336|emb|CAB55623.1| transcription factor, COUP-TFI;  PMID:;
     gi|28461227|ref|NP_786998.1| nuclear receptor subfamily 2, ;  PMID:;
135.          240          466          24          48.09          2.0e-12
     gi|30140|emb|CAA34277.1| COUP-TF [Homo sapiens] ;  PMID:2739739;
     gi|226405|prf||1510304A COUP transcription factor ;  PMID:2739739;
136.          240          466          24          48.09          2.0e-12
     gi|31067|emb|CAA31283.1| unnamed protein product [Homo ;  PMID:2905047;
     gi|5032173|ref|NP_005645.1| nuclear receptor subfamily 2, ;  PMID:12551987,12093745,11934895,11811951,8530078,2739739,2905047;
     gi|88881|pir||S02710 transcription factor ear-3 - h;  PMID:2905047,2739739;
     gi|13278759|gb|AAH04154.1| Nuclear receptor subfamily 2, ;  PMID:12477932;
     gi|116959|sp|P10589|COT1_HUMAN COUP transcription factor 1 (C;  PMID:2739739,2905047,12477932;
137.          240          466          24          48.09          2.0e-12
     gi|6753770|ref|NP_034281.1| nuclear receptor subfamily 2, ;  PMID:7947324,8183930;
     gi|695627|emb|CAA52231.1| COUP-TF1 [Mus musculus] ;  PMID:7947324;
     gi|2500905|sp|Q60632|COT1_MOUSE COUP transcription factor 1 (C;  PMID:8183930,7947324;
     gi|2137329|pir||I48305 gene COUP-TF1 protein - mouse ;  PMID:8183930,7947324;
138.          240          466          23          48.09          2.0e-12
     gi|2143896|pir||A57000 orphan receptor COUP-TFI - rat;  PMID:7797489,7578258;
     gi|506762|gb|AAA83437.1| orphan receptor COUP-TFI ;  PMID:7797489;
     gi|13592107|ref|NP_112392.1| nuclear receptor subfamily 2, ;  PMID:7578258,7797489;
139.          240          466          23          48.09          2.0e-12
     gi|5353742|gb|AAD42224.1| COUP transcription factor 1 [X;  PMID:;
140.          254          466          25          45.11          4.0e-12
     gi|31206855|ref|XP_312394.1| ENSANGP00000002992 [Anopheles ;  PMID:;
     gi|21295375|gb|EAA07520.1| ENSANGP00000002992 [Anopheles ;  PMID:;
141.          254          466          25          45.11          4.0e-12
142.          250          465          25          45.74          4.0e-12
143.          254          466          25          45.11          4.0e-12
144.          240          466          24          48.09          4.0e-12
145.          240          466          23          48.09          4.0e-12
     gi|20589472|ref|NP_571255.1| nuclear receptor subfamily 2, ;  PMID:10207156,9537416,9192646,8541212,8467797;
     gi|296419|emb|CAA49780.1| svp 44 [Danio rerio] ;  PMID:8467797;
     gi|6094377|sp|Q06725|NR2F1_BRARE Nuclear receptor Nr2f1 (Steroi;  PMID:8467797;
     gi|486779|pir||S35333 steroid receptor protein svp44;  PMID:8467797;
146.          240          466          23          48.09          4.0e-12
     gi|34194058|gb|AAH56574.1| Nuclear receptor subfamily 2, ;  PMID:12477932;
147.          254          466          25          45.11          5.0e-12
148.          246          470          24          47.66          5.0e-12
149.          254          466          24          45.11          6.0e-12
150.          254          462          27          44.26          8.0e-12
151.          254          462          26          44.26          8.0e-12
     gi|47223192|emb|CAG11327.1| unnamed protein product [Tetra;  PMID:;
152.          245          465          25          46.81          8.0e-12
     gi|72139942|ref|XP_792757.1| PREDICTED: similar to nuclear ;  PMID:;
153.          245          465          25          46.81          8.0e-12
     gi|72077428|ref|XP_794533.1| PREDICTED: similar to nuclear ;  PMID:;
154.          254          466          25          45.11          8.0e-12
155.          254          466          27          45.11          1.0e-11
156.          248          469          26          47.02          1.0e-11
157.          254          466          26          45.11          1.0e-11
     gi|68342537|gb|AAC32789.3| retinoid X receptor homolog [C;  PMID:9705089;
158.          234          466          25          49.36          1.0e-11
     gi|10946385|gb|AAG24887.1| ultraspiracle isoform-B [Aedes;  PMID:8892313,9765285;
159.          234          466          25          49.36          1.0e-11
     gi|10946383|gb|AAG24886.1| ultraspiracle isoform-A [Aedes;  PMID:8892313,9765285;
160.          232          466          25          49.79          1.0e-11
161.          254          466          24          45.11          1.0e-11
     gi|12484038|gb|AAG53940.1| nuclear hormone receptor [Aede;  PMID:;
162.          252          466          26          45.53          2.0e-11
     gi|6007621|gb|AAF00981.1| RXR [Locusta migratoria] ;  PMID:10502114;
163.          243          470          25          48.30          2.0e-11
164.          243          470          25          48.30          2.0e-11
165.          254          466          25          45.11          2.0e-11
     gi|91082215|ref|XP_972475.1| PREDICTED: similar to retinoid;  PMID:;
166.          254          466          24          45.11          2.0e-11
     gi|28974300|gb|AAO61416.1| COUP-TF [Branchiostoma florida;  PMID:11180796;
167.          254          462          26          44.26          3.0e-11
168.          254          470          26          45.96          3.0e-11
     gi|58395020|ref|XP_320944.2| ENSANGP00000017626 [Anopheles ;  PMID:;
     gi|55233281|gb|EAA01003.3| ENSANGP00000017626 [Anopheles ;  PMID:;
169.          251          466          25          45.74          3.0e-11
170.          254          466          24          45.11          3.0e-11
171.          152          469          23          67.45          3.0e-11
     gi|28916416|gb|AAO59489.1| Ff1d [Danio rerio] ;  PMID:;
     gi|33468585|emb|CAE30391.1| novel protein similar to Caras;  PMID:;
172.          254          468          26          45.53          4.0e-11
173.          222          466          25          51.91          4.0e-11
     gi|73967622|ref|XP_858489.1| PREDICTED: similar to Retinoic;  PMID:;
174.          254          466          26          45.11          5.0e-11
     gi|71040960|gb|AAZ20371.1| RXRd nuclear hormone receptor ;  PMID:;
175.          254          466          26          45.11          5.0e-11
     gi|71040956|gb|AAZ20369.1| RXRb nuclear hormone receptor ;  PMID:;
176.          254          466          26          45.11          5.0e-11
     gi|71040954|gb|AAZ20368.1| RXRa nuclear hormone receptor ;  PMID:;
177.          254          462          26          44.26          5.0e-11
178.          254          462          26          44.26          5.0e-11
179.          254          466          25          45.11          7.0e-11
180.          254          462          27          44.26          2.0e-10
181.          248          469          26          47.02          2.0e-10
182.          222          466          26          51.91          2.0e-10
     gi|73967634|ref|XP_858729.1| PREDICTED: similar to Retinoic;  PMID:;
183.          254          466          24          45.11          2.0e-10
     gi|6983809|emb|CAB75361.1| USP protein [Tenebrio molitor];  PMID:;
184.          247          458          29          44.89          3.0e-10
185.          256          466          28          44.68          3.0e-10
     gi|21955144|ref|NP_665723.1| pregnancy specific beta-1-glyc;  PMID:;
     gi|16905400|gb|AAL31316.1| orphan receptor [Rattus norveg;  PMID:;
186.          256          466          27          44.68          3.0e-10
187.          256          466          27          44.68          3.0e-10
188.          254          466          26          45.11          3.0e-10
189.          254          466          24          45.11          3.0e-10
190.          254          466          24          45.11          3.0e-10
     gi|62088068|dbj|BAD92481.1| retinoid X receptor, beta vari;  PMID:;
191.          254          466          24          45.11          3.0e-10
192.          254          466          24          45.11          3.0e-10
193.          254          466          24          45.11          3.0e-10
194.          254          466          24          45.11          3.0e-10
195.          254          465          23          44.89          3.0e-10
196.          256          466          27          44.68          5.0e-10
197.          256          466          27          44.68          5.0e-10
198.          256          466          27          44.68          5.0e-10
199.          256          466          27          44.68          5.0e-10
200.          256          466          27          44.68          5.0e-10
201.          256          466          27          44.68          5.0e-10
     gi|1049076|gb|AAC29502.1| TR2 [Mus musculus] ;  PMID:9694834;
     gi|16905398|gb|AAL31315.1| orphan receptor [Mus musculus];  PMID:;
202.          256          466          27          44.68          5.0e-10
     gi|1890579|emb|CAA72244.1| orphan receptor [Mus musculus];  PMID:8595902,9504722;
     gi|31982760|ref|NP_035759.2| nuclear receptor subfamily 2, ;  PMID:12093744,9774688,9694834,9504722,8858600,8595902;
203.          254          466          25          45.11          5.0e-10
     gi|84028535|gb|ABC49726.1| retinoid X receptor 3 [Petromy;  PMID:;
204.          240          466          26          48.09          6.0e-10
     gi|6166208|sp|P41235|HNF4A_HUMAN Hepatocyte nuclear factor 4-al;  PMID:7926813,8964514,8622695,8945471,11780052,7568236,9313765,9243109,9267996,9449683;
205.          240          466          26          48.09          6.0e-10
206.          240          466          26          48.09          6.0e-10
     gi|1843522|gb|AAB48082.1| hepatocyte nuclear factor 4-al;  PMID:8945471;
207.          240          466          26          48.09          6.0e-10
     gi|31077207|ref|NP_849180.1| hepatocyte nuclear factor 4 al;  PMID:12829997,12697672,12551987,12544512,12504020,12133007,12235114,12220494,12089346,11994285,12036449,11834723,11818510,11811951,11549316,10737800,9313765,9048927,8964514,8622695,7568236,7926813;
208.          240          466          26          48.09          6.0e-10
     gi|9714201|emb|CAC01303.1| HNF4A [Homo sapiens] ;  PMID:;
     gi|7446193|pir||JC6096 hepatocyte nuclear factor 4 al;  PMID:8622695;
     gi|1588510|prf||2208436A hepatocyte nuclear factor 4:IS;  PMID:8622695;
     gi|31077205|ref|NP_000448.3| hepatocyte nuclear factor 4 al;  PMID:12829997,12697672,12551987,12544512,12504020,12133007,12235114,12220494,12089346,11994285,12036449,11834723,11818510,11811951,11549316,10737800,9313765,9048927,8964514,8622695,7568236,7926813;
     gi|1217961|emb|CAA89989.1| hepatocyte nuclear factor 4 al;  PMID:8622695;
209.          240          466          26          48.09          6.0e-10
210.          240          466          26          48.09          6.0e-10
     gi|575253|emb|CAA54248.1| hepatocyte nuclear factor 4 [H;  PMID:7926813;
211.          240          466          26          48.09          6.0e-10
     gi|1595752|emb|CAA61133.1| Hepatocyte nuclear factor 4A [;  PMID:8964514;
     gi|2135340|pir||JC4936 hepatocyte nuclear factor 4A -;  PMID:8964514;
212.          240          466          26          48.09          6.0e-10
     gi|1595756|emb|CAA61134.1| Hepatocyte nuclear factor 4B [;  PMID:8964514;
     gi|2135341|pir||JC4937 hepatocyte nuclear factor 4, s;  PMID:7926813,8964514;
213.          240          466          26          48.09          6.0e-10
     gi|2135342|pir||JC4938 hepatocyte nuclear factor 4C -;  PMID:8964514;
     gi|1843523|gb|AAB48083.1| hepatocyte nuclear factor 4-al;  PMID:8945471;
     gi|1595754|emb|CAA61135.1| Hepatocyte nuclear factor 4C [;  PMID:8964514;
214.          240          466          26          48.09          6.0e-10
     gi|31077209|ref|NP_849181.1| hepatocyte nuclear factor 4 al;  PMID:12829997,12697672,12551987,12544512,12504020,12133007,12235114,12220494,12089346,11994285,12036449,11834723,11818510,11811951,11549316,10737800,9313765,9048927,8964514,8622695,7568236,7926813;
215.          240          466          26          48.09          6.0e-10
216.          240          466          26          48.09          6.0e-10
217.          240          466          26          48.09          6.0e-10
218.          240          466          26          48.09          6.0e-10
219.          254          468          25          45.53          6.0e-10
     gi|1710810|sp|P51129|RXRG_XENLA Retinoic acid receptor RXR-gam;  PMID:1312717;
     gi|283825|pir||D41977 retinoid receptor gamma - Afri;  PMID:1312717;
220.          234          466          25          49.36          6.0e-10
     gi|6601567|gb|AAF19033.1| ultraspiracle [Aedes albopictu;  PMID:10644973;
221.          256          466          27          44.68          8.0e-10
222.          240          466          25          48.09          8.0e-10
223.          238          465          25          48.30          8.0e-10
224.          222          466          25          51.91          8.0e-10
     gi|76631074|ref|XP_873813.1| PREDICTED: similar to Retinoic;  PMID:;
225.          254          466          24          45.11          8.0e-10
     gi|18044456|gb|AAH19432.1| Rxrb protein [Mus musculus] ;  PMID:12477932;
226.          254          466          24          45.11          8.0e-10
     gi|74198206|dbj|BAE35275.1| unnamed protein product [Mus m;  PMID:;
227.          254          466          24          45.11          8.0e-10
228.          254          465          23          44.89          8.0e-10
229.          254          466          26          45.11          1.0e-09
     gi|41282088|ref|NP_571292.2| retinoid x receptor, alpha [Da;  PMID:10207156,9537416,9192646,7565671;
     gi|37590367|gb|AAH59576.1| Retinoid x receptor, alpha [Da;  PMID:;
     gi|52788288|sp|Q90416|RXRA_BRARE Retinoic acid receptor RXR-alp;  PMID:7565671;
230.          254          462          26          44.26          1.0e-09
     gi|56207752|emb|CAI20776.1| novel protein similar to verte;  PMID:;
231.          254          462          26          44.26          1.0e-09
232.          254          466          26          45.11          1.0e-09
     gi|2133901|pir||I50515 retinoid X receptor alpha - ze;  PMID:7565671;
     gi|1046295|gb|AAC59720.1| retinoid X receptor alpha ;  PMID:7565671;
     gi|1583308|prf||2120366C retinoid X receptor:ISOTYPE=al;  PMID:7565671;
233.          254          470          25          45.96          1.0e-09
     gi|74006078|ref|XP_859290.1| PREDICTED: similar to Retinoic;  PMID:;
234.          254          466          25          45.11          1.0e-09
     gi|84028531|gb|ABC49724.1| retinoid X receptor 1 [Petromy;  PMID:;
235.          254          468          25          45.53          1.0e-09
     gi|57032681|gb|AAH88915.1| LOC496325 protein [Xenopus lae;  PMID:;
236.          254          470          25          45.96          1.0e-09
     gi|74006092|ref|XP_859541.1| PREDICTED: similar to Retinoic;  PMID:;
237.          254          466          25          45.11          1.0e-09
     gi|76649853|ref|XP_882788.1| PREDICTED: similar to retinoid;  PMID:;
238.          254          466          24          45.11          1.0e-09
     gi|73972502|ref|XP_862727.1| PREDICTED: similar to retinoid;  PMID:;
239.          254          466          24          45.11          1.0e-09
     gi|8118613|gb|AAF73057.1| ultraspiracle protein; RXR [Ap;  PMID:;
     gi|30691980|gb|AAP33487.1| ultraspiracle protein [Apis me;  PMID:;
240.          254          470          24          45.96          1.0e-09
     gi|74006090|ref|XP_859507.1| PREDICTED: similar to Retinoic;  PMID:;
241.          262          466          24          43.40          1.0e-09
242.          256          466          27          44.68          2.0e-09
243.          248          465          26          46.17          2.0e-09
244.          254          466          26          45.11          2.0e-09
     gi|76631072|ref|XP_887003.1| PREDICTED: similar to Retinoic;  PMID:;
245.          254          466          26          45.11          2.0e-09
     gi|73967638|ref|XP_858806.1| PREDICTED: similar to Retinoic;  PMID:;
246.          254          470          25          45.96          2.0e-09
     gi|54026|emb|CAA46964.1| retinoid X receptor-gamma [Mus;  PMID:1312497;
     gi|285012|pir||S26670 retinoic acid receptor X-gamma;  PMID:1312497;
247.          254          470          25          45.96          2.0e-09
     gi|74006086|ref|XP_859436.1| PREDICTED: similar to Retinoic;  PMID:;
248.          254          466          25          45.11          2.0e-09
     gi|84028533|gb|ABC49725.1| retinoid X receptor 2 [Petromy;  PMID:;
249.          254          466          25          45.11          3.0e-09
 

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