PSCA reference

BC011564;RF20603A.DAX1	Protein Sequence Comparative Analysis (PSCA)

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BC011564 REFERENCE SYSTEM

Accession: BC011564
Description: BC011564 Homo sapiens nuclear receptor subfamily 0, group B, member 1, mRNA (cDNA clone MGC:20161 IMAGE:4637694), complete cds, coding region:13-1425
Organism: HOMO SAPIENS
Keyword: BC011564 Homo sapiens nuclear receptor subfamily 0, group B, member 1, mRNA (cDNA clone MGC:20161 IMAGE:4637694), complete cds, coding region:13-1425

References

PMID Filter

Deleting genome references

Reference classification

Trusted or extreme similarity

Gathering or high similarity

Noise or low similarity

Sequence reference

SP-EMBL: ; PMID:;
GenBank: ; PMID:;

Family annotation

1.          trusted          evalue:7.9e-52
    Pfam:v3_1_0:1g2nA00   0;  PMID:;
2.          trusted          evalue:1.2e-50
    Pfam:v3_1_0:1ymtA00   0;  PMID:;
3.          trusted          evalue:7.4e-49
    Pfam:v3_1_0:2gpuA00   0;  PMID:;
4.          trusted          evalue:1.3e-49
    Pfam:v3_1_0:1mznA00   0;  PMID:;
5.          trusted          evalue:5.6e-46
    Pfam:v3_1_0:2h79A00   0;  PMID:;
6.          trusted          evalue:3.3e-46
    Pfam:v3_1_0:1pzlA00   0;  PMID:;
7.          trusted          evalue:7.6e-46
    Pfam:v3_1_0:1ie9A00   0;  PMID:;
8.          trusted          evalue:5.6e-46
    Pfam:v3_1_0:1fcyA00   0;  PMID:;
9.          trusted          evalue:2.4e-44
    Pfam:v3_1_0:1pq9B00   0;  PMID:;
10.          trusted          evalue:1.3e-42
    Pfam:v3_1_0:1oshA00   0;  PMID:;
11.          trusted          evalue:5.6e-40
    Pfam:PF00104   Ligand-binding domain of nuclear hormone receptor;  PMID:9600906;
12.          trusted          evalue:8.4e-42
    Pfam:v3_1_0:2ax6A00   0;  PMID:;
13.          trusted          evalue:9.4e-43
    Pfam:v3_1_0:1nrlB00   0;  PMID:;
14.          trusted          evalue:4.5e-38
    Pfam:v3_1_0:1xpcA00   0;  PMID:;
15.          trusted          evalue:7.6e-39
    Pfam:v3_1_0:1r1kD00   0;  PMID:;
16.          trusted          evalue:4.7e-33
    Pfam:v3_1_0:1ovlB00   0;  PMID:;
17.          trusted          evalue:1.8e-31
    Pfam:v3_1_0:1nq7A00   0;  PMID:;
18.          trusted          evalue:1.9e-28
    Pfam:v3_1_0:2awhB00   0;  PMID:;

PDB similairty

No.    Start    End    Identity%    Coverage%    Evalue
1.          203          470          68          56.81          2.0e-99
     Pdb:3F5C STRUCTURE OF DAX-1:LRH-1 COMPLEX ; PMID:;
2.          207          469          36          55.74          2.0e-30
     Pdb:4NUF CRYSTAL STRUCTURE OF SHP/EID1 ; PMID:;
3.          254          462          29          44.26          4.0e-16
     Pdb:3P0U CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF HUMAN TEST; PMID:;
4.          254          466          26          45.11          1.0e-13
     Pdb:4LOG THE CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR PNR LIG; PMID:;
5.          240          468          24          48.51          4.0e-12
     Pdb:3CJW CRYSTAL STRUCTURE OF THE HUMAN COUP-TFII LIGAND BINDING DOMA; PMID:;
6.          254          466          25          45.11          6.0e-12
     Pdb:4OZT CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAINS OF THE BOVIC; PMID:;
7.          254          466          25          45.11          8.0e-12
     Pdb:1Z5X HEMIPTERAN ECDYSONE RECEPTOR LIGAND-BINDING DOMAIN COMPLEXED; PMID:;
8.          254          466          26          45.11          9.0e-12
     Pdb:2NXX CRYSTAL STRUCTURE OF THE LIGAND-BINDING DOMAINS OF THE T.CAS; PMID:;
9.          254          466          25          45.11          1.0e-11
     Pdb:4OZR CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAINS OF THE BOVIC; PMID:;
10.          231          466          24          50.00          3.0e-11
11.          240          466          27          48.09          4.0e-11
     Pdb:4IQR MULTI-DOMAIN ORGANIZATION OF THE HNF4ALPHA NUCLEAR RECEPTOR ; PMID:;
12.          222          466          24          51.91          8.0e-11
13.          240          467          27          48.30          5.0e-10
     Pdb:4B7W LIGAND BINDING DOMAIN HUMAN HEPATOCYTE NUCLEAR FACTOR 4ALPHA; PMID:;
14.          240          467          27          48.30          6.0e-10
     Pdb:1PZL CRYSTAL STRUCTURE OF HNF4A LBD IN COMPLEX WITH THE LIGAND AN; PMID:;
15.          222          466          24          51.91          6.0e-10
     Pdb:1LBD LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR- ALP; PMID:8548460,7760929,7501014;
16.          240          467          27          48.30          7.0e-10
     Pdb:3FS1 CRYSTAL STRUCTURE OF HNF4A LBD IN COMPLEX WITH THE LIGAND AN; PMID:;
17.          222          466          24          51.91          7.0e-10
     Pdb:4OC7 RETINOIC ACID RECEPTOR ALPHA IN COMPLEX WITH (E)-3-(3'-ALLYL; PMID:;
18.          222          466          24          51.91          1.0e-09
     Pdb:1FBY CRYSTAL STRUCTURE OF THE HUMAN RXR ALPHA LIGAND BINDING DOMA; PMID:10835357;
19.          222          466          24          51.91          1.0e-09
     Pdb:1G5Y THE 2.0 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE RXRALPH; PMID:10970886,10882139;
     Pdb:3OZJ CRYSTAL STRUCTURE OF HUMAN RETINOIC X RECEPTOR ALPHA COMPLEX; PMID:;
     Pdb:1K74 THE 2.3 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETEROD; PMID:11698662;
     Pdb:1FM6 THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETEROD; PMID:10882139;
     Pdb:1G1U THE 2.5 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE RXRALPH; PMID:10970886,10882139;
     Pdb:1FM9 THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETEROD; PMID:10882139;
     Pdb:2ACL LIVER X-RECEPTOR ALPHA LIGAND BINDING DOMAIN WITH SB313987 ; PMID:16107141;
20.          222          466          24          51.91          1.0e-09
     Pdb:2ZY0 CRYSTAL STRUCTURE OF THE HUMAN RXR ALPHA LIGAND BINDING DOMA; PMID:;
     Pdb:3R5M CRYSTAL STRUCTURE OF RXRALPHALBD COMPLEXED WITH THE AGONIST ; PMID:;
     Pdb:1MVC CRYSTAL STRUCTURE OF THE HUMAN RXR ALPHA LIGAND BINDING DOMA; PMID:11981034;
     Pdb:3NSP CRYSTAL STRUCTURE OF TETRAMERIC RXRALPHA-LBD ; PMID:;
     Pdb:1MV9 CRYSTAL STRUCTURE OF THE HUMAN RXR ALPHA LIGAND BINDING DOMA; PMID:11981034;
     Pdb:1MZN CRYSTAL STRUCTURE AT 1.9 ANGSTROEMS RESOLUTION OF THE HOMODI; PMID:11981034,10835357;
     Pdb:2P1V CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF THE RETINO; PMID:;
     Pdb:2P1T CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF THE RETINO; PMID:;
     Pdb:3FUG CRYSTAL STRUCTURE OF THE RETINOID X RECEPTOR LIGAND BINDING ; PMID:;
     Pdb:3NSQ CRYSTAL STRUCTURE OF TETRAMERIC RXRALPHA-LBD COMPLEXED WITH ; PMID:;
     Pdb:3R29 CRYSTAL STRUCTURE OF RXRALPHA LIGAND-BINDING DOMAIN COMPLEXE; PMID:;
     Pdb:2P1U CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF THE RETINO; PMID:;
     Pdb:2ZXZ CRYSTAL STRUCTURE OF THE HUMAN RXR ALPHA LIGAND BINDING DOMA; PMID:;
     Pdb:3R2A CRYSTAL STRUCTURE OF RXRALPHA LIGAND-BINDING DOMAIN COMPLEXE; PMID:;
21.          222          466          24          51.91          1.0e-09
     Pdb:3FC6 HRXRALPHA & MLXRALPHA WITH AN INDOLE PHARMACOPHORE, SB786875; PMID:;
     Pdb:3FAL HUMANRXR ALPHA & MOUSE LXR ALPHA COMPLEXED WITH RETENOIC ACI; PMID:;
     Pdb:1RDT CRYSTAL STRUCTURE OF A NEW REXINOID BOUND TO THE RXRALPHA LI; PMID:;
22.          222          466          24          51.91          1.0e-09
23.          222          466          24          51.91          1.0e-09
24.          222          466          24          51.91          1.0e-09
25.          222          466          24          51.91          1.0e-09
     Pdb:3KWY CRYSTAL STRUCTURE OF RXRALPHA LIGAND BINDING DOMAIN IN COMPL; PMID:;
     Pdb:4N8R CRYSTAL STRUCTURE OF RXRA LBD COMPLEXED WITH A SYNTHETIC MOD; PMID:;
     Pdb:4N5G CRYSTAL STRUCTURE OF RXRA LBD COMPLEXED WITH A SYNTHETIC MOD; PMID:;
     Pdb:3E94 CRYSTAL STRUCTURE OF RXRALPHA LIGAND BINDING DOMAIN IN COMPL; PMID:;
26.          222          466          24          51.91          1.0e-09
     Pdb:3A9E CRYSTAL STRUCTURE OF A MIXED AGONIST-BOUND RAR-ALPHA AND ANT; PMID:;
27.          222          466          24          51.91          1.0e-09
     Pdb:4RMC CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4K6I CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4M8H CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4M8E CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4POJ CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4K4J CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4POH CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4RFW CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4PP3 CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4PP5 CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
28.          222          466          24          51.91          1.0e-09
     Pdb:3PCU CRYSTAL STRUCTURE OF HUMAN RETINOIC X RECEPTOR ALPHA LIGAND-; PMID:;
29.          222          466          24          51.91          1.0e-09
30.          222          466          24          51.91          1.0e-09
     Pdb:4J5W CRYSTAL STRUCTURE OF THE APO-PXR/RXRALPHA LBD HETEROTETRAMER; PMID:;
     Pdb:4J5X CRYSTAL STRUCTURE OF THE SR12813-BOUND PXR/RXRALPHA LBD HETE; PMID:;
31.          254          466          24          45.11          1.0e-09
32.          222          466          24          51.91          2.0e-09
     Pdb:1DKF CRYSTAL STRUCTURE OF A HETERODIMERIC COMPLEX OF RAR AND RXR ; PMID:10882070;
33.          222          466          24          51.91          2.0e-09
     Pdb:3H0A CRYSTAL STRUCTURE OF PEROXISOME PROLIFERATOR-ACTIVATED RECEP; PMID:;
34.          254          466          24          45.11          2.0e-09
     Pdb:1UHL CRYSTAL STRUCTURE OF THE LXRALFA-RXRBETA LBD HETERODIMER ; PMID:;
35.          254          466          24          45.11          3.0e-09
     Pdb:3EYB STRUCTURAL AND FUNCTIONAL INSIGHTS INTO THE LIGAND BINDING D; PMID:;
36.          254          468          24          45.53          4.0e-09
     Pdb:2Q60 CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF POLYANDROC; PMID:;
37.          254          468          25          45.53          6.0e-09
     Pdb:2GL8 HUMAN RETINOIC ACID RECEPTOR RXR-GAMMA LIGAND-BINDING DOMAIN; PMID:;
38.          223          466          25          51.70          2.0e-08
     Pdb:1LV2 HEPATOCYTE NUCLEAR FACTOR 4 IS A TRANSCRIPTION FACTOR THAT C; PMID:12220494;
39.          254          449          24          41.49          2.0e-08
     Pdb:1HG4 ULTRASPIRACLE LIGAND BINDING DOMAIN FROM DROSOPHILA MELANOGA; PMID:11171988;
40.          253          469          23          45.96          8.0e-08
     Pdb:3TX7 CRYSTAL STRUCTURE OF LRH-1/BETA-CATENIN COMPLEX ; PMID:;
41.          253          469          23          45.96          2.0e-07
     Pdb:1YUC HUMAN NUCLEAR RECEPTOR LIVER RECEPTOR HOMOLOGUE-1, LRH-1, BO; PMID:;
     Pdb:4DOR HUMAN NUCLEAR RECEPTOR LIVER RECEPTOR HOMOLOGUE-1, LRH-1, IN; PMID:;
42.          253          469          23          45.96          2.0e-07
     Pdb:3PLZ HUMAN LRH1 LBD BOUND TO GR470 ; PMID:;
43.          253          469          23          45.96          2.0e-07
     Pdb:4RWV CRYSTAL STRUCTURE OF PIP3 BOUND HUMAN NUCLEAR RECEPTOR LRH-1; PMID:;
44.          253          469          23          45.96          2.0e-07
     Pdb:4ONI STRUCTURE OF HUMAN ORPHAN RECEPTOR LRH1 BOUND TO TWO BACTERI; PMID:;
45.          253          469          23          45.96          3.0e-07
     Pdb:1ZDU THE CRYSTAL STRUCTURE OF HUMAN LIVER RECEPTOR HOMOLOGUE-1 ; PMID:;
46.          253          469          23          45.96          3.0e-07
     Pdb:1YOK CRYSTAL STRUCTURE OF HUMAN LRH-1 BOUND WITH TIF-2 PEPTIDE AN; PMID:;
47.          253          466          22          45.32          6.0e-07
     Pdb:4DOS HUMAN NUCLEAR RECEPTOR LIVER RECEPTOR HOMOLOGUE-1, LRH-1, BO; PMID:;
48.          244          469          23          47.87          2.0e-06
     Pdb:1PK5 CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR LRH-1 ; PMID:12820970;
     Pdb:3F5C STRUCTURE OF DAX-1:LRH-1 COMPLEX ; PMID:;

NR homologs

No.    Start    End    Identity%    Coverage%    Evalue
1.          1          470          100          99.79          0.0e+00
2.          1          470          100          99.79          0.0e+00
3.          1          470          99          99.79          0.0e+00
4.          1          470          99          99.79          0.0e+00
5.          1          460          99          97.66          0.0e+00
6.          1          470          98          99.79          0.0e+00
7.          1          470          97          99.79          0.0e+00
8.          1          470          97          99.79          0.0e+00
9.          1          470          97          99.79          0.0e+00
10.          1          470          94          99.79          0.0e+00
11.          1          470          78          99.79          0.0e+00
12.          1          470          77          99.79          0.0e+00
13.          1          389          75          82.55          0.0e+00
14.          1          470          74          99.79          0.0e+00
15.          1          470          73          99.79          0.0e+00
16.          1          470          65          99.79          0.0e+00
17.          1          470          64          99.79          0.0e+00
18.          200          470          60          57.45          3.0e-82
19.          200          470          53          57.45          1.0e-69
20.          198          470          51          57.87          2.0e-60
21.          204          469          47          56.38          2.0e-57
22.          204          469          47          56.38          1.0e-56
23.          248          465          51          46.17          7.0e-53
24.          240          349          88          23.19          4.0e-48
25.          246          389          68          30.43          5.0e-46
26.          242          466          41          47.66          3.0e-42
27.          199          469          40          57.45          2.0e-41
28.          244          469          39          47.87          1.0e-38
29.          244          469          42          47.87          3.0e-38
30.          244          466          39          47.23          4.0e-38
31.          199          466          33          56.81          3.0e-34
32.          244          470          38          48.09          6.0e-34
33.          244          466          39          47.23          1.0e-33
34.          244          466          39          47.23          1.0e-33
35.          244          466          39          47.23          3.0e-33
36.          244          466          38          47.23          7.0e-33
37.          391          470          86          16.81          1.0e-32
38.          227          466          36          50.85          5.0e-30
39.          226          466          36          51.06          3.0e-29
40.          244          466          36          47.23          4.0e-29
41.          375          461          73          18.30          4.0e-28
42.          383          452          81          14.68          5.0e-25
43.          241          371          48          27.66          4.0e-23
44.          3          98          58          20.21          2.0e-19
45.          246          466          29          46.81          2.0e-18
46.          254          465          27          44.89          5.0e-17
47.          254          466          29          45.11          7.0e-17
48.          254          466          29          45.11          7.0e-17
49.          254          466          29          45.11          7.0e-17
50.          254          466          29          45.11          7.0e-17
51.          254          466          29          45.11          7.0e-17
52.          254          466          29          45.11          7.0e-17
53.          254          466          29          45.11          7.0e-17
54.          254          466          29          45.11          7.0e-17
55.          254          466          29          45.11          7.0e-17
56.          254          466          29          45.11          7.0e-17
57.          254          466          29          45.11          7.0e-17
58.          254          466          29          45.11          7.0e-17
59.          254          466          29          45.11          7.0e-17
60.          254          466          29          45.11          9.0e-17
61.          254          466          29          45.11          1.0e-16
62.          254          466          29          45.11          2.0e-16
63.          254          466          28          45.11          2.0e-16
64.          254          462          29          44.26          3.0e-16
     gi|21310109|gb|AAM46150.1| nuclear orphan receptor TR2/4 ; PMID:;
65.          254          462          30          44.26          4.0e-16
66.          254          462          30          44.26          4.0e-16
67.          254          465          26          44.89          2.0e-15
68.          254          466          28          45.11          3.0e-15
69.          254          466          28          45.11          6.0e-15
70.          245          465          26          46.81          6.0e-15
71.          254          466          28          45.11          1.0e-14
72.          254          462          28          44.26          1.0e-14
73.          254          462          28          44.26          1.0e-14
74.          254          462          28          44.26          1.0e-14
75.          254          462          28          44.26          1.0e-14
76.          254          462          28          44.26          2.0e-14
77.          254          462          28          44.26          2.0e-14
     gi|912822|gb|AAB33314.1| type II zinc finger DNA bindin; PMID:7841789;
     gi|2143463|pir||I54075 gene mTR2R1 protein - mouse ; PMID:7841789;
78.          254          462          28          44.26          2.0e-14
79.          254          462          28          44.26          2.0e-14
80.          254          462          28          44.26          2.0e-14
81.          241          466          26          47.87          2.0e-14
82.          229          465          26          50.21          2.0e-14
83.          222          465          23          51.70          2.0e-14
84.          249          465          26          45.96          3.0e-14
85.          229          465          26          50.21          3.0e-14
86.          254          462          28          44.26          4.0e-14
87.          254          462          27          44.26          4.0e-14
88.          254          462          27          44.26          5.0e-14
89.          229          465          26          50.21          5.0e-14
90.          229          465          26          50.21          5.0e-14
91.          254          462          28          44.26          7.0e-14
92.          254          462          27          44.26          9.0e-14
     gi|62859085|ref|NP_001016207.1| TR4 orphan receptor [Xenopus t; PMID:;
93.          254          462          28          44.26          1.0e-13
94.          240          466          24          48.09          1.0e-13
     gi|1703646|gb|AAB37686.1| xCOUP-TF-B=proposed retinoid r; PMID:8652410;
95.          240          466          24          48.09          2.0e-13
96.          254          462          27          44.26          3.0e-13
97.          254          466          27          45.11          3.0e-13
     gi|70907499|emb|CAH69897.1| retinoid X receptor [Blattella; PMID:;
98.          254          466          27          45.11          3.0e-13
     gi|70907501|emb|CAH69898.1| retinoid X receptor [Blattella; PMID:;
99.          238          465          25          48.30          3.0e-13
100.          254          466          25          45.11          3.0e-13
101.          254          466          25          45.11          3.0e-13
     gi|6094378|sp|Q06726|NR2F5_BRARE Nuclear receptor Nr2f5 (Steroi; PMID:8467797;
     gi|296421|emb|CAA49781.1| spv 46 [Danio rerio] ; PMID:8467797;
     gi|20589475|ref|NP_571261.1| nuclear receptor subfamily 2, ; PMID:8467797;
     gi|486780|pir||S35334 steroid receptor protein svp46; PMID:8467797;
102.          240          466          24          48.09          3.0e-13
103.          243          466          24          47.45          4.0e-13
     gi|104087|pir||S20617 transcription factor Coup - Af; PMID:1536886;
     gi|64643|emb|CAA44806.1| Coup transcription factor [Xen; PMID:1536886;
104.          240          466          24          48.09          6.0e-13
     gi|27924187|gb|AAH44975.1| Nr2f2-prov protein [Xenopus la; PMID:;
105.          240          466          24          48.09          6.0e-13
     gi|482928|emb|CAA54096.1| ARP-1 [Mus musculus] ; PMID:7947324;
106.          240          466          24          48.09          6.0e-13
     gi|32454395|gb|AAP82999.1| ovalbumin upstream promoter tr; PMID:;
107.          240          466          24          48.09          6.0e-13
     gi|1311663|gb|AAA99309.1| Drosophila seven-up homolog/ma; PMID:8541212;
     gi|24111246|ref|NP_571258.1| nuclear receptor subfamily 2, ; PMID:8541212;
108.          240          466          24          48.09          6.0e-13
     gi|45598394|ref|NP_033827.2| nuclear receptor subfamily 2, ; PMID:12614160,12385758,7947324,8183930;
     gi|114203|sp|P24468|COT2_HUMAN COUP transcription factor 2 (C; PMID:1899293,12477932,1820218;
     gi|14149746|ref|NP_066285.1| nuclear receptor subfamily 2, ; PMID:12843196,12614160,8530078,1899293,1820218;
     gi|15779213|gb|AAH14664.1| Nuclear receptor subfamily 2, ; PMID:;
     gi|27781285|gb|AAH42897.1| Nuclear receptor subfamily 2, ; PMID:12477932;
     gi|20832998|ref|XP_133568.1| (XM_133568) similar to nuclear; PMID:;
     gi|466470|gb|AAA19854.1| COUP-TFII ; PMID:8183930;
     gi|27503725|gb|AAH42484.1| Nuclear receptor subfamily 2, ; PMID:12477932;
     gi|105357|pir||A37133 apolipoprotein A-I regulatory ; PMID:1820218,1899293;
     gi|2137150|pir||I48975 apolipoprotein A-I regulatory ; PMID:8183930,7947324;
     gi|46397833|sp|P43135|COT2_MOUSE COUP transcription factor 2 (C; PMID:7947324;
     gi|179024|gb|AAA86429.1| apolipoprotein AI regulatory p; PMID:1899293;
     gi|1575343|gb|AAB09475.1| apoliprotein AI regulatory pro; PMID:;
109.          240          466          24          48.09          6.0e-13
     gi|3913114|sp|Q90733|COT2_CHICK COUP transcription factor 2 (C; PMID:8119130;
     gi|2134377|pir||I50689 orphan receptor COUP-TFII - ch; PMID:8119130;
     gi|392817|gb|AAA17733.1| orphan receptor COUP-TFII ; PMID:8119130;
110.          240          466          24          48.09          6.0e-13
111.          240          466          24          48.09          6.0e-13
     gi|5870338|emb|CAB55624.1| COUP-TFII transcription factor; PMID:;
     gi|27806025|ref|NP_776827.1| nuclear receptor subfamily 2, ; PMID:;
     gi|10719969|sp|Q9TTR7|COT2_BOVIN COUP transcription factor 2 (C; PMID:;
112.          240          466          24          48.09          6.0e-13
     gi|18158445|ref|NP_542956.1| nuclear receptor subfamily 2, ; PMID:;
     gi|3913096|sp|O09018|COT2_RAT COUP transcription factor 2 (C; PMID:;
     gi|2197125|gb|AAB61297.1| ovalbumin upstream promoter be; PMID:;
113.          240          466          24          48.09          6.0e-13
114.          240          466          24          48.09          6.0e-13
115.          240          466          24          48.09          6.0e-13
116.          240          466          24          48.09          6.0e-13
117.          240          466          24          48.09          6.0e-13
118.          245          466          27          47.02          8.0e-13
119.          254          466          26          45.11          1.0e-12
     gi|33943178|gb|AAQ55293.1| nuclear receptor RXR-l [Locust; PMID:;
120.          254          466          25          45.11          1.0e-12
     gi|103410|pir||A32693 steroid receptor protein svp 1; PMID:2105166;
     gi|158519|gb|AAA62770.1| seven-up protein type 1 ; PMID:2105166;
     gi|112858|sp|P16375|7UP1_DROME Steroid receptor seven-up, iso; PMID:2105166,10731132;
     gi|17737921|ref|NP_524325.1| seven up CG11502-PB, isoform B; PMID:10731132;
     gi|7299588|gb|AAF54773.1| CG11502-PB, isoform B [Drosoph; PMID:10731132;
121.          254          466          25          45.11          1.0e-12
     gi|21744271|gb|AAM76194.1| RE08410p [Drosophila melanogas; PMID:;
122.          254          466          25          45.11          1.0e-12
123.          254          466          24          45.11          1.0e-12
124.          254          466          24          45.11          1.0e-12
125.          240          466          24          48.09          1.0e-12
     gi|14090242|dbj|BAB55582.1| seven-up alpha [Bombyx mori] ; PMID:11267900;
126.          241          468          23          48.30          1.0e-12
127.          254          462          26          44.26          2.0e-12
128.          254          466          25          45.11          2.0e-12
129.          240          466          24          48.09          2.0e-12
130.          240          466          24          48.09          2.0e-12
131.          240          466          24          48.09          2.0e-12
     gi|466468|gb|AAA19853.1| COUP-TFI ; PMID:8183930;
     gi|80478748|gb|AAI08409.1| Nr2f1 protein [Mus musculus] ; PMID:;
132.          240          466          24          48.09          2.0e-12
133.          240          466          24          48.09          2.0e-12
     gi|73952057|ref|XP_848884.1| PREDICTED: similar to COUP tra; PMID:;
134.          240          466          24          48.09          2.0e-12
     gi|10719970|sp|Q9TTR8|COT1_BOVIN COUP transcription factor 1 (C; PMID:;
     gi|5870336|emb|CAB55623.1| transcription factor, COUP-TFI; PMID:;
     gi|28461227|ref|NP_786998.1| nuclear receptor subfamily 2, ; PMID:;
135.          240          466          24          48.09          2.0e-12
     gi|30140|emb|CAA34277.1| COUP-TF [Homo sapiens] ; PMID:2739739;
     gi|226405|prf||1510304A COUP transcription factor ; PMID:2739739;
136.          240          466          24          48.09          2.0e-12
     gi|31067|emb|CAA31283.1| unnamed protein product [Homo ; PMID:2905047;
     gi|5032173|ref|NP_005645.1| nuclear receptor subfamily 2, ; PMID:12551987,12093745,11934895,11811951,8530078,2739739,2905047;
     gi|88881|pir||S02710 transcription factor ear-3 - h; PMID:2905047,2739739;
     gi|13278759|gb|AAH04154.1| Nuclear receptor subfamily 2, ; PMID:12477932;
     gi|116959|sp|P10589|COT1_HUMAN COUP transcription factor 1 (C; PMID:2739739,2905047,12477932;
137.          240          466          24          48.09          2.0e-12
     gi|6753770|ref|NP_034281.1| nuclear receptor subfamily 2, ; PMID:7947324,8183930;
     gi|695627|emb|CAA52231.1| COUP-TF1 [Mus musculus] ; PMID:7947324;
     gi|2500905|sp|Q60632|COT1_MOUSE COUP transcription factor 1 (C; PMID:8183930,7947324;
     gi|2137329|pir||I48305 gene COUP-TF1 protein - mouse ; PMID:8183930,7947324;
138.          240          466          23          48.09          2.0e-12
     gi|2143896|pir||A57000 orphan receptor COUP-TFI - rat; PMID:7797489,7578258;
     gi|506762|gb|AAA83437.1| orphan receptor COUP-TFI ; PMID:7797489;
     gi|13592107|ref|NP_112392.1| nuclear receptor subfamily 2, ; PMID:7578258,7797489;
139.          240          466          23          48.09          2.0e-12
     gi|5353742|gb|AAD42224.1| COUP transcription factor 1 [X; PMID:;
140.          254          466          25          45.11          4.0e-12
     gi|31206855|ref|XP_312394.1| ENSANGP00000002992 [Anopheles ; PMID:;
     gi|21295375|gb|EAA07520.1| ENSANGP00000002992 [Anopheles ; PMID:;
141.          254          466          25          45.11          4.0e-12
142.          250          465          25          45.74          4.0e-12
143.          254          466          25          45.11          4.0e-12
144.          240          466          24          48.09          4.0e-12
145.          240          466          23          48.09          4.0e-12
     gi|20589472|ref|NP_571255.1| nuclear receptor subfamily 2, ; PMID:10207156,9537416,9192646,8541212,8467797;
     gi|296419|emb|CAA49780.1| svp 44 [Danio rerio] ; PMID:8467797;
     gi|6094377|sp|Q06725|NR2F1_BRARE Nuclear receptor Nr2f1 (Steroi; PMID:8467797;
     gi|486779|pir||S35333 steroid receptor protein svp44; PMID:8467797;
146.          240          466          23          48.09          4.0e-12
     gi|34194058|gb|AAH56574.1| Nuclear receptor subfamily 2, ; PMID:12477932;
147.          254          466          25          45.11          5.0e-12
148.          246          470          24          47.66          5.0e-12
149.          254          466          24          45.11          6.0e-12
150.          254          462          27          44.26          8.0e-12
151.          254          462          26          44.26          8.0e-12
     gi|47223192|emb|CAG11327.1| unnamed protein product [Tetra; PMID:;
152.          245          465          25          46.81          8.0e-12
     gi|72139942|ref|XP_792757.1| PREDICTED: similar to nuclear ; PMID:;
153.          245          465          25          46.81          8.0e-12
     gi|72077428|ref|XP_794533.1| PREDICTED: similar to nuclear ; PMID:;
154.          254          466          25          45.11          8.0e-12
155.          254          466          27          45.11          1.0e-11
156.          248          469          26          47.02          1.0e-11
157.          254          466          26          45.11          1.0e-11
     gi|68342537|gb|AAC32789.3| retinoid X receptor homolog [C; PMID:9705089;
158.          234          466          25          49.36          1.0e-11
     gi|10946385|gb|AAG24887.1| ultraspiracle isoform-B [Aedes; PMID:8892313,9765285;
159.          234          466          25          49.36          1.0e-11
     gi|10946383|gb|AAG24886.1| ultraspiracle isoform-A [Aedes; PMID:8892313,9765285;
160.          232          466          25          49.79          1.0e-11
161.          254          466          24          45.11          1.0e-11
     gi|12484038|gb|AAG53940.1| nuclear hormone receptor [Aede; PMID:;
162.          252          466          26          45.53          2.0e-11
     gi|6007621|gb|AAF00981.1| RXR [Locusta migratoria] ; PMID:10502114;
163.          243          470          25          48.30          2.0e-11
164.          243          470          25          48.30          2.0e-11
165.          254          466          25          45.11          2.0e-11
     gi|91082215|ref|XP_972475.1| PREDICTED: similar to retinoid; PMID:;
166.          254          466          24          45.11          2.0e-11
     gi|28974300|gb|AAO61416.1| COUP-TF [Branchiostoma florida; PMID:11180796;
167.          254          462          26          44.26          3.0e-11
168.          254          470          26          45.96          3.0e-11
     gi|58395020|ref|XP_320944.2| ENSANGP00000017626 [Anopheles ; PMID:;
     gi|55233281|gb|EAA01003.3| ENSANGP00000017626 [Anopheles ; PMID:;
169.          251          466          25          45.74          3.0e-11
170.          254          466          24          45.11          3.0e-11
171.          152          469          23          67.45          3.0e-11
     gi|28916416|gb|AAO59489.1| Ff1d [Danio rerio] ; PMID:;
     gi|33468585|emb|CAE30391.1| novel protein similar to Caras; PMID:;
172.          254          468          26          45.53          4.0e-11
173.          222          466          25          51.91          4.0e-11
     gi|73967622|ref|XP_858489.1| PREDICTED: similar to Retinoic; PMID:;
174.          254          466          26          45.11          5.0e-11
     gi|71040960|gb|AAZ20371.1| RXRd nuclear hormone receptor ; PMID:;
175.          254          466          26          45.11          5.0e-11
     gi|71040956|gb|AAZ20369.1| RXRb nuclear hormone receptor ; PMID:;
176.          254          466          26          45.11          5.0e-11
     gi|71040954|gb|AAZ20368.1| RXRa nuclear hormone receptor ; PMID:;
177.          254          462          26          44.26          5.0e-11
178.          254          462          26          44.26          5.0e-11
179.          254          466          25          45.11          7.0e-11
180.          254          462          27          44.26          2.0e-10
181.          248          469          26          47.02          2.0e-10
182.          222          466          26          51.91          2.0e-10
     gi|73967634|ref|XP_858729.1| PREDICTED: similar to Retinoic; PMID:;
183.          254          466          24          45.11          2.0e-10
     gi|6983809|emb|CAB75361.1| USP protein [Tenebrio molitor]; PMID:;
184.          247          458          29          44.89          3.0e-10
185.          256          466          28          44.68          3.0e-10
     gi|21955144|ref|NP_665723.1| pregnancy specific beta-1-glyc; PMID:;
     gi|16905400|gb|AAL31316.1| orphan receptor [Rattus norveg; PMID:;
186.          256          466          27          44.68          3.0e-10
187.          256          466          27          44.68          3.0e-10
188.          254          466          26          45.11          3.0e-10
189.          254          466          24          45.11          3.0e-10
190.          254          466          24          45.11          3.0e-10
     gi|62088068|dbj|BAD92481.1| retinoid X receptor, beta vari; PMID:;
191.          254          466          24          45.11          3.0e-10
192.          254          466          24          45.11          3.0e-10
193.          254          466          24          45.11          3.0e-10
194.          254          466          24          45.11          3.0e-10
195.          254          465          23          44.89          3.0e-10
196.          256          466          27          44.68          5.0e-10
197.          256          466          27          44.68          5.0e-10
198.          256          466          27          44.68          5.0e-10
199.          256          466          27          44.68          5.0e-10
200.          256          466          27          44.68          5.0e-10
201.          256          466          27          44.68          5.0e-10
     gi|1049076|gb|AAC29502.1| TR2 [Mus musculus] ; PMID:9694834;
     gi|16905398|gb|AAL31315.1| orphan receptor [Mus musculus]; PMID:;
202.          256          466          27          44.68          5.0e-10
     gi|1890579|emb|CAA72244.1| orphan receptor [Mus musculus]; PMID:8595902,9504722;
     gi|31982760|ref|NP_035759.2| nuclear receptor subfamily 2, ; PMID:12093744,9774688,9694834,9504722,8858600,8595902;
203.          254          466          25          45.11          5.0e-10
     gi|84028535|gb|ABC49726.1| retinoid X receptor 3 [Petromy; PMID:;
204.          240          466          26          48.09          6.0e-10
     gi|6166208|sp|P41235|HNF4A_HUMAN Hepatocyte nuclear factor 4-al; PMID:7926813,8964514,8622695,8945471,11780052,7568236,9313765,9243109,9267996,9449683;
205.          240          466          26          48.09          6.0e-10
206.          240          466          26          48.09          6.0e-10
     gi|1843522|gb|AAB48082.1| hepatocyte nuclear factor 4-al; PMID:8945471;
207.          240          466          26          48.09          6.0e-10
     gi|31077207|ref|NP_849180.1| hepatocyte nuclear factor 4 al; PMID:12829997,12697672,12551987,12544512,12504020,12133007,12235114,12220494,12089346,11994285,12036449,11834723,11818510,11811951,11549316,10737800,9313765,9048927,8964514,8622695,7568236,7926813;
208.          240          466          26          48.09          6.0e-10
     gi|9714201|emb|CAC01303.1| HNF4A [Homo sapiens] ; PMID:;
     gi|7446193|pir||JC6096 hepatocyte nuclear factor 4 al; PMID:8622695;
     gi|1588510|prf||2208436A hepatocyte nuclear factor 4:IS; PMID:8622695;
     gi|31077205|ref|NP_000448.3| hepatocyte nuclear factor 4 al; PMID:12829997,12697672,12551987,12544512,12504020,12133007,12235114,12220494,12089346,11994285,12036449,11834723,11818510,11811951,11549316,10737800,9313765,9048927,8964514,8622695,7568236,7926813;
     gi|1217961|emb|CAA89989.1| hepatocyte nuclear factor 4 al; PMID:8622695;
209.          240          466          26          48.09          6.0e-10
210.          240          466          26          48.09          6.0e-10
     gi|575253|emb|CAA54248.1| hepatocyte nuclear factor 4 [H; PMID:7926813;
211.          240          466          26          48.09          6.0e-10
     gi|1595752|emb|CAA61133.1| Hepatocyte nuclear factor 4A [; PMID:8964514;
     gi|2135340|pir||JC4936 hepatocyte nuclear factor 4A -; PMID:8964514;
212.          240          466          26          48.09          6.0e-10
     gi|1595756|emb|CAA61134.1| Hepatocyte nuclear factor 4B [; PMID:8964514;
     gi|2135341|pir||JC4937 hepatocyte nuclear factor 4, s; PMID:7926813,8964514;
213.          240          466          26          48.09          6.0e-10
     gi|2135342|pir||JC4938 hepatocyte nuclear factor 4C -; PMID:8964514;
     gi|1843523|gb|AAB48083.1| hepatocyte nuclear factor 4-al; PMID:8945471;
     gi|1595754|emb|CAA61135.1| Hepatocyte nuclear factor 4C [; PMID:8964514;
214.          240          466          26          48.09          6.0e-10
     gi|31077209|ref|NP_849181.1| hepatocyte nuclear factor 4 al; PMID:12829997,12697672,12551987,12544512,12504020,12133007,12235114,12220494,12089346,11994285,12036449,11834723,11818510,11811951,11549316,10737800,9313765,9048927,8964514,8622695,7568236,7926813;
215.          240          466          26          48.09          6.0e-10
216.          240          466          26          48.09          6.0e-10
217.          240          466          26          48.09          6.0e-10
218.          240          466          26          48.09          6.0e-10
219.          254          468          25          45.53          6.0e-10
     gi|1710810|sp|P51129|RXRG_XENLA Retinoic acid receptor RXR-gam; PMID:1312717;
     gi|283825|pir||D41977 retinoid receptor gamma - Afri; PMID:1312717;
220.          234          466          25          49.36          6.0e-10
     gi|6601567|gb|AAF19033.1| ultraspiracle [Aedes albopictu; PMID:10644973;
221.          256          466          27          44.68          8.0e-10
222.          240          466          25          48.09          8.0e-10
223.          238          465          25          48.30          8.0e-10
224.          222          466          25          51.91          8.0e-10
     gi|76631074|ref|XP_873813.1| PREDICTED: similar to Retinoic; PMID:;
225.          254          466          24          45.11          8.0e-10
     gi|18044456|gb|AAH19432.1| Rxrb protein [Mus musculus] ; PMID:12477932;
226.          254          466          24          45.11          8.0e-10
     gi|74198206|dbj|BAE35275.1| unnamed protein product [Mus m; PMID:;
227.          254          466          24          45.11          8.0e-10
228.          254          465          23          44.89          8.0e-10
229.          254          466          26          45.11          1.0e-09
     gi|41282088|ref|NP_571292.2| retinoid x receptor, alpha [Da; PMID:10207156,9537416,9192646,7565671;
     gi|37590367|gb|AAH59576.1| Retinoid x receptor, alpha [Da; PMID:;
     gi|52788288|sp|Q90416|RXRA_BRARE Retinoic acid receptor RXR-alp; PMID:7565671;
230.          254          462          26          44.26          1.0e-09
     gi|56207752|emb|CAI20776.1| novel protein similar to verte; PMID:;
231.          254          462          26          44.26          1.0e-09
232.          254          466          26          45.11          1.0e-09
     gi|2133901|pir||I50515 retinoid X receptor alpha - ze; PMID:7565671;
     gi|1046295|gb|AAC59720.1| retinoid X receptor alpha ; PMID:7565671;
     gi|1583308|prf||2120366C retinoid X receptor:ISOTYPE=al; PMID:7565671;
233.          254          470          25          45.96          1.0e-09
     gi|74006078|ref|XP_859290.1| PREDICTED: similar to Retinoic; PMID:;
234.          254          466          25          45.11          1.0e-09
     gi|84028531|gb|ABC49724.1| retinoid X receptor 1 [Petromy; PMID:;
235.          254          468          25          45.53          1.0e-09
     gi|57032681|gb|AAH88915.1| LOC496325 protein [Xenopus lae; PMID:;
236.          254          470          25          45.96          1.0e-09
     gi|74006092|ref|XP_859541.1| PREDICTED: similar to Retinoic; PMID:;
237.          254          466          25          45.11          1.0e-09
     gi|76649853|ref|XP_882788.1| PREDICTED: similar to retinoid; PMID:;
238.          254          466          24          45.11          1.0e-09
     gi|73972502|ref|XP_862727.1| PREDICTED: similar to retinoid; PMID:;
239.          254          466          24          45.11          1.0e-09
     gi|8118613|gb|AAF73057.1| ultraspiracle protein; RXR [Ap; PMID:;
     gi|30691980|gb|AAP33487.1| ultraspiracle protein [Apis me; PMID:;
240.          254          470          24          45.96          1.0e-09
     gi|74006090|ref|XP_859507.1| PREDICTED: similar to Retinoic; PMID:;
241.          262          466          24          43.40          1.0e-09
242.          256          466          27          44.68          2.0e-09
243.          248          465          26          46.17          2.0e-09
244.          254          466          26          45.11          2.0e-09
     gi|76631072|ref|XP_887003.1| PREDICTED: similar to Retinoic; PMID:;
245.          254          466          26          45.11          2.0e-09
     gi|73967638|ref|XP_858806.1| PREDICTED: similar to Retinoic; PMID:;
246.          254          470          25          45.96          2.0e-09
     gi|54026|emb|CAA46964.1| retinoid X receptor-gamma [Mus; PMID:1312497;
     gi|285012|pir||S26670 retinoic acid receptor X-gamma; PMID:1312497;
247.          254          470          25          45.96          2.0e-09
     gi|74006086|ref|XP_859436.1| PREDICTED: similar to Retinoic; PMID:;
248.          254          466          25          45.11          2.0e-09
     gi|84028533|gb|ABC49725.1| retinoid X receptor 2 [Petromy; PMID:;
249.          254          466          25          45.11          3.0e-09

Notes: The reference system provides subject-oriented search and sequence-oriented search for reference collection. The reference filter supports the classification and selection of references. You can use a group of buttons to select references based on your interest or the relative level of references that are justified base on some criteria, e.g. trusted or high similairties. By deafult, PSCA shows the references whose levels are better than gathering or high similarity of reference classification.

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