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   AF124247;AF124247
Protein Sequence Comparative Analysis   (PSCA)
 
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AF124247    REFERENCE SYSTEM

Accession: AF124247
Description: AF124247 Homo sapiens hepatocytic transcription factor hB1F-2 (B1F2) mRNA, complete cds, coding region:1-1623
Organism: HOMO SAPIENS
Keyword: AF124247 Homo sapiens hepatocytic transcription factor hB1F-2 (B1F2) mRNA, complete cds, coding region:1-1623

  

References           
PMID Filter
     Deleting genome references          
     Reference classification      Trusted or extreme similarity       Gathering or high similarity       Noise or low similarity
 
Sequence reference                    
   SP-EMBL: ;  PMID:;
   GenBank: ;  PMID:;
Family annotation                  
1.          trusted          evalue:1.9e-92
    Pfam:v3_1_0:1nrlB00   0;  PMID:;
2.          trusted          evalue:1.7e-71
    Pfam:v3_1_0:1ymtA00   0;  PMID:;
3.          trusted          evalue:1.5e-66
    Pfam:v3_1_0:2h79A00   0;  PMID:;
4.          trusted          evalue:3.3e-66
    Pfam:v3_1_0:2awhB00   0;  PMID:;
5.          trusted          evalue:1.8e-69
    Pfam:v3_1_0:2ax6A00   0;  PMID:;
6.          trusted          evalue:3.5e-64
    Pfam:v3_1_0:1xpcA00   0;  PMID:;
7.          trusted          evalue:1.9e-62
    Pfam:v3_1_0:1pzlA00   0;  PMID:;
8.          trusted          evalue:8.7e-63
    Pfam:v3_1_0:2gpuA00   0;  PMID:;
9.          trusted          evalue:1.0e-62
    Pfam:v3_1_0:1g2nA00   0;  PMID:;
10.          trusted          evalue:1.4e-64
    Pfam:v3_1_0:1mznA00   0;  PMID:;
11.          trusted          evalue:1.3e-61
    Pfam:v3_1_0:1pq9B00   0;  PMID:;
12.          trusted          evalue:4.6e-62
    Pfam:v3_1_0:1fcyA00   0;  PMID:;
13.          trusted          evalue:1.2e-58
    Pfam:v3_1_0:1ovlB00   0;  PMID:;
14.          trusted          evalue:1.1e-56
    Pfam:PF00104   Ligand-binding domain of nuclear hormone receptor;  PMID:9600906;
15.          trusted          evalue:3.7e-56
    Pfam:v3_1_0:1oshA00   0;  PMID:;
16.          trusted          evalue:7.1e-56
    Pfam:v3_1_0:1nq7A00   0;  PMID:;
17.          trusted          evalue:7.4e-57
    Pfam:v3_1_0:1ie9A00   0;  PMID:;
18.          trusted          evalue:1.4e-57
    Pfam:v3_1_0:1r1kD00   0;  PMID:;
19.          trusted          evalue:1.2e-52
    Pfam:PF00105   Zinc finger, C4 type (two domains);  PMID:;
20.          trusted          evalue:3.2e-37
    Pfam:v3_1_0:2a66A00   0;  PMID:;
21.          trusted          evalue:5.2e-32
    Pfam:v3_1_0:2nllB00   0;  PMID:;
22.          trusted          evalue:1.0e-28
    Pfam:v3_1_0:2c7aA00   0;  PMID:;
23.          trusted          evalue:1.5e-29
    Pfam:v3_1_0:1dszA00   0;  PMID:;
24.          trusted          evalue:2.0e-26
    Pfam:v3_1_0:2nllA00   0;  PMID:;
 
PDB similairty                    
No.    Start    End    Identity%    Coverage%    Evalue
1.          291          541          100          46.21          0.0e+00
     Pdb:4ONI STRUCTURE OF HUMAN ORPHAN RECEPTOR LRH1 BOUND TO TWO BACTERI; PMID:;
2.          294          541          100          45.66          0.0e+00
     Pdb:4RWV CRYSTAL STRUCTURE OF PIP3 BOUND HUMAN NUCLEAR RECEPTOR LRH-1; PMID:;
3.          297          541          100          45.10          0.0e+00
     Pdb:1ZDU THE CRYSTAL STRUCTURE OF HUMAN LIVER RECEPTOR HOMOLOGUE-1 ; PMID:;
4.          190          541          99          64.88          0.0e+00
     Pdb:3TX7 CRYSTAL STRUCTURE OF LRH-1/BETA-CATENIN COMPLEX ; PMID:;
5.          289          541          99          46.58          0.0e+00
     Pdb:1YUC HUMAN NUCLEAR RECEPTOR LIVER RECEPTOR HOMOLOGUE-1, LRH-1, BO; PMID:;
     Pdb:4DOR HUMAN NUCLEAR RECEPTOR LIVER RECEPTOR HOMOLOGUE-1, LRH-1, IN; PMID:;
6.          297          538          99          44.55          0.0e+00
     Pdb:4DOS HUMAN NUCLEAR RECEPTOR LIVER RECEPTOR HOMOLOGUE-1, LRH-1, BO; PMID:;
7.          299          541          99          44.73          0.0e+00
     Pdb:1YOK CRYSTAL STRUCTURE OF HUMAN LRH-1 BOUND WITH TIF-2 PEPTIDE AN; PMID:;
8.          299          541          99          44.73          0.0e+00
     Pdb:3PLZ HUMAN LRH1 LBD BOUND TO GR470 ; PMID:;
9.          300          538          97          43.99          0.0e+00
     Pdb:4IS8 DIVERGENT SEQUENCE TUNES LIGAND SENSITIVITY IN PHOSPHOLIPID-; PMID:;
10.          294          541          87          45.66          1.0e-127
     Pdb:1PK5 CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR LRH-1 ; PMID:12820970;
     Pdb:3F5C STRUCTURE OF DAX-1:LRH-1 COMPLEX ; PMID:;
11.          299          541          88          44.73          1.0e-125
     Pdb:1ZH7 STRUCTURAL AND BIOCHEMICAL BASIS FOR SELECTIVE REPRESSION OF; PMID:15976031;
12.          314          540          61          41.77          3.0e-74
     Pdb:1YP0 STRUCTURE OF THE STEROIDOGENIC FACTOR-1 LIGAND BINDING DOMAI; PMID:;
13.          314          541          60          41.96          8.0e-73
     Pdb:1YMT MOUSE SF-1 LBD ; PMID:;
14.          314          541          60          41.96          1.0e-72
     Pdb:3F7D SF-1 LBD BOUND BY PHOSPHATIDYLCHOLINE ; PMID:;
15.          314          541          60          41.96          5.0e-70
     Pdb:4QK4 CRYSTAL STRUCTURE OF HUMAN NUCLEAR RECEPTOR SF-1 (NR5A1) BOU; PMID:;
     Pdb:4QJR CRYSTAL STRUCTURE OF HUMAN NUCLEAR RECEPTOR SF-1 (NR5A1) BOU; PMID:;
16.          314          541          60          41.96          7.0e-70
     Pdb:1ZDT THE CRYSTAL STRUCTURE OF HUMAN STEROIDOGENIC FACTOR-1 ; PMID:;
17.          314          541          60          41.96          1.0e-69
     Pdb:1YOW HUMAN STEROIDOGENIC FACTOR 1 LBD WITH BOUND CO-FACTOR PEPTID; PMID:;
18.          79          187          100          19.96          1.0e-60
     Pdb:2A66 HUMAN LIVER RECEPTOR HOMOLOGUE DNA-BINDING DOMAIN (HLRH-1 DB; PMID:16289203;
19.          83          184          91          18.67          4.0e-52
     Pdb:2FF0 SOLUTION STRUCTURE OF STEROIDOGENIC FACTOR 1 DNA BINDING DOM; PMID:16339274;
20.          292          540          39          45.84          4.0e-44
     Pdb:2XHS CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF FUSHI TARA; PMID:;
21.          345          538          41          35.67          3.0e-34
22.          345          538          41          35.67          3.0e-33
23.          345          538          41          35.67          4.0e-33
     Pdb:1LBD LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR- ALP; PMID:8548460,7760929,7501014;
24.          345          538          41          35.67          4.0e-33
     Pdb:4OC7 RETINOIC ACID RECEPTOR ALPHA IN COMPLEX WITH (E)-3-(3'-ALLYL; PMID:;
25.          345          538          41          35.67          6.0e-33
     Pdb:3KWY CRYSTAL STRUCTURE OF RXRALPHA LIGAND BINDING DOMAIN IN COMPL; PMID:;
     Pdb:4N8R CRYSTAL STRUCTURE OF RXRA LBD COMPLEXED WITH A SYNTHETIC MOD; PMID:;
     Pdb:4N5G CRYSTAL STRUCTURE OF RXRA LBD COMPLEXED WITH A SYNTHETIC MOD; PMID:;
     Pdb:3E94 CRYSTAL STRUCTURE OF RXRALPHA LIGAND BINDING DOMAIN IN COMPL; PMID:;
26.          345          538          41          35.67          7.0e-33
     Pdb:3A9E CRYSTAL STRUCTURE OF A MIXED AGONIST-BOUND RAR-ALPHA AND ANT; PMID:;
27.          345          538          41          35.67          8.0e-33
     Pdb:3FC6 HRXRALPHA & MLXRALPHA WITH AN INDOLE PHARMACOPHORE, SB786875; PMID:;
     Pdb:3FAL HUMANRXR ALPHA & MOUSE LXR ALPHA COMPLEXED WITH RETENOIC ACI; PMID:;
     Pdb:1RDT CRYSTAL STRUCTURE OF A NEW REXINOID BOUND TO THE RXRALPHA LI; PMID:;
28.          345          538          41          35.67          8.0e-33
29.          345          538          41          35.67          8.0e-33
     Pdb:4J5W CRYSTAL STRUCTURE OF THE APO-PXR/RXRALPHA LBD HETEROTETRAMER; PMID:;
     Pdb:4J5X CRYSTAL STRUCTURE OF THE SR12813-BOUND PXR/RXRALPHA LBD HETE; PMID:;
30.          345          538          41          35.67          9.0e-33
     Pdb:1FBY CRYSTAL STRUCTURE OF THE HUMAN RXR ALPHA LIGAND BINDING DOMA; PMID:10835357;
31.          345          538          41          35.67          9.0e-33
     Pdb:1G5Y THE 2.0 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE RXRALPH; PMID:10970886,10882139;
     Pdb:3OZJ CRYSTAL STRUCTURE OF HUMAN RETINOIC X RECEPTOR ALPHA COMPLEX; PMID:;
     Pdb:1K74 THE 2.3 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETEROD; PMID:11698662;
     Pdb:1FM6 THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETEROD; PMID:10882139;
     Pdb:1G1U THE 2.5 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE RXRALPH; PMID:10970886,10882139;
     Pdb:1FM9 THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETEROD; PMID:10882139;
     Pdb:2ACL LIVER X-RECEPTOR ALPHA LIGAND BINDING DOMAIN WITH SB313987 ; PMID:16107141;
32.          345          538          41          35.67          9.0e-33
     Pdb:2ZY0 CRYSTAL STRUCTURE OF THE HUMAN RXR ALPHA LIGAND BINDING DOMA; PMID:;
     Pdb:3R5M CRYSTAL STRUCTURE OF RXRALPHALBD COMPLEXED WITH THE AGONIST ; PMID:;
     Pdb:1MVC CRYSTAL STRUCTURE OF THE HUMAN RXR ALPHA LIGAND BINDING DOMA; PMID:11981034;
     Pdb:3NSP CRYSTAL STRUCTURE OF TETRAMERIC RXRALPHA-LBD ; PMID:;
     Pdb:1MV9 CRYSTAL STRUCTURE OF THE HUMAN RXR ALPHA LIGAND BINDING DOMA; PMID:11981034;
     Pdb:1MZN CRYSTAL STRUCTURE AT 1.9 ANGSTROEMS RESOLUTION OF THE HOMODI; PMID:11981034,10835357;
     Pdb:2P1V CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF THE RETINO; PMID:;
     Pdb:2P1T CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF THE RETINO; PMID:;
     Pdb:3FUG CRYSTAL STRUCTURE OF THE RETINOID X RECEPTOR LIGAND BINDING ; PMID:;
     Pdb:3NSQ CRYSTAL STRUCTURE OF TETRAMERIC RXRALPHA-LBD COMPLEXED WITH ; PMID:;
     Pdb:3R29 CRYSTAL STRUCTURE OF RXRALPHA LIGAND-BINDING DOMAIN COMPLEXE; PMID:;
     Pdb:2P1U CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF THE RETINO; PMID:;
     Pdb:2ZXZ CRYSTAL STRUCTURE OF THE HUMAN RXR ALPHA LIGAND BINDING DOMA; PMID:;
     Pdb:3R2A CRYSTAL STRUCTURE OF RXRALPHA LIGAND-BINDING DOMAIN COMPLEXE; PMID:;
33.          345          538          41          35.67          9.0e-33
34.          345          538          41          35.67          1.0e-32
     Pdb:1DKF CRYSTAL STRUCTURE OF A HETERODIMERIC COMPLEX OF RAR AND RXR ; PMID:10882070;
35.          345          538          41          35.67          1.0e-32
36.          345          538          41          35.67          1.0e-32
37.          345          538          41          35.67          1.0e-32
     Pdb:4RMC CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4K6I CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4M8H CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4M8E CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4POJ CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4K4J CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4POH CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4RFW CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4PP3 CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
     Pdb:4PP5 CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND ; PMID:;
38.          345          538          41          35.67          1.0e-32
     Pdb:3PCU CRYSTAL STRUCTURE OF HUMAN RETINOIC X RECEPTOR ALPHA LIGAND-; PMID:;
39.          345          536          40          35.30          5.0e-32
     Pdb:3H0A CRYSTAL STRUCTURE OF PEROXISOME PROLIFERATOR-ACTIVATED RECEP; PMID:;
40.          345          536          41          35.30          7.0e-32
41.          345          536          39          35.30          3.0e-31
     Pdb:2GL8 HUMAN RETINOIC ACID RECEPTOR RXR-GAMMA LIGAND-BINDING DOMAIN; PMID:;
42.          345          536          40          35.30          1.0e-30
     Pdb:3EYB STRUCTURAL AND FUNCTIONAL INSIGHTS INTO THE LIGAND BINDING D; PMID:;
43.          345          538          38          35.67          2.0e-30
     Pdb:1UHL CRYSTAL STRUCTURE OF THE LXRALFA-RXRBETA LBD HETERODIMER ; PMID:;
44.          345          536          36          35.30          1.0e-28
     Pdb:2Q60 CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF POLYANDROC; PMID:;
45.          345          532          38          34.57          3.0e-28
     Pdb:1H9U THE STRUCTURE OF THE HUMAN RETINOID-X-RECEPTOR BETA LIGAND B; PMID:11782480;
46.          345          538          38          35.67          4.0e-28
     Pdb:1Z5X HEMIPTERAN ECDYSONE RECEPTOR LIGAND-BINDING DOMAIN COMPLEXED; PMID:;
47.          345          538          33          35.67          4.0e-26
     Pdb:2NXX CRYSTAL STRUCTURE OF THE LIGAND-BINDING DOMAINS OF THE T.CAS; PMID:;
48.          83          163          59          14.79          1.0e-25
     Pdb:1DSZ STRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN C; PMID:10698945;
49.          83          163          59          14.79          1.0e-25
     Pdb:4CN7 CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA- BIND; PMID:;
     Pdb:4CN5 CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA- BIND; PMID:;
     Pdb:4CN2 CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA- BIND; PMID:;
     Pdb:4CN3 CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA- BIND; PMID:;
50.          345          536          35          35.30          1.0e-25
     Pdb:3CJW CRYSTAL STRUCTURE OF THE HUMAN COUP-TFII LIGAND BINDING DOMA; PMID:;
51.          83          163          59          14.79          2.0e-25
     Pdb:1YNW CRYSTAL STRUCTURE OF VITAMIN D RECEPTOR AND 9-CIS RETINOIC A; PMID:;
52.          86          168          56          15.16          3.0e-25
     Pdb:1CIT DNA-BINDING MECHANISM OF THE MONOMERIC ORPHAN NUCLEAR RECEPT; PMID:10331876;
53.          83          163          58          14.79          4.0e-25
     Pdb:4CN3 CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA- BIND; PMID:;
54.          345          536          36          35.30          7.0e-25
     Pdb:4OZR CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAINS OF THE BOVIC; PMID:;
55.          83          160          61          14.23          8.0e-25
     Pdb:2HAN STRUCTURAL BASIS OF HETERODIMERIC ECDYSTEROID RECEPTOR INTER; PMID:17426125;
56.          345          536          36          35.30          8.0e-25
     Pdb:4OZT CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAINS OF THE BOVIC; PMID:;
57.          83          158          60          13.86          2.0e-24
     Pdb:1R0N CRYSTAL STRUCTURE OF HETERODIMERIC ECDSYONE RECEPTOR DNA BIN; PMID:14592980;
58.          83          160          58          14.23          2.0e-24
     Pdb:1BY4 STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE R; PMID:10669605;
59.          83          163          58          14.79          2.0e-24
     Pdb:1RXR HIGH RESOLUTION SOLUTION STRUCTURE OF THE RETINOID X RECEPTO; PMID:9698548;
60.          83          168          56          15.71          2.0e-24
     Pdb:1LO1 ESTROGEN RELATED RECEPTOR 2 DNA BINDING DOMAIN IN COMPLEX WI; PMID:12654265;
61.          83          160          60          14.23          5.0e-24
     Pdb:4UMM THE CRYO-EM STRUCTURE OF THE PALINDROMIC DNA-BOUND USP-ECR N; PMID:;
62.          83          160          61          14.23          4.0e-23
     Pdb:1R0O CRYSTAL STRUCTURE OF THE HETERODIMERIC ECDYSONE RECEPTOR DNA; PMID:14592980;
63.          85          161          57          14.05          3.0e-22
     Pdb:1HLZ CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV- ERB(AL; PMID:11669620,9660968;
     Pdb:1A6Y REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX ; PMID:9660968;
     Pdb:1GA5 CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV- ERB(AL; PMID:11669620,9660968;
64.          345          539          34          35.86          3.0e-22
     Pdb:1TFC CRYSTAL STRUCTURE OF THE LIGAND-BINDING DOMAIN OF THE ESTROG; PMID:;
     Pdb:2P7G X-RAY STRUCTURE OF ESTROGEN RELATED RECEPTOR G IN COMPLEX WI; PMID:;
     Pdb:2P7Z ESTROGEN RELATED RECEPTOR GAMMA IN COMPLEX WITH 4-HYDROXY- T; PMID:;
     Pdb:1VJB CRYSTAL STRUCTURE OF THE LIGAND-BINDING DOMAIN OF THE ESTROG; PMID:;
     Pdb:2P7A CRYSTAL STRUCTURE OF ESTROGEN RELATED RECEPTOR G IN COMPLEX ; PMID:;
65.          86          160          60          13.68          4.0e-22
     Pdb:1DSZ STRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN C; PMID:10698945;
66.          345          539          34          35.86          4.0e-22
     Pdb:2ZKC CRYSTAL STRUCTURE OF HUMAN ESTROGEN-RELATED RECEPTOR GAMMA L; PMID:;
     Pdb:2ZBS CRYSTAL STRUCTURE OF HUMAN ESTROGEN-RELATED RECEPTOR GAMMA L; PMID:;
     Pdb:2E2R CRYSTAL STRUCTURE OF HUMAN ESTROGEN-RELATED RECEPTOR GAMMA L; PMID:;
     Pdb:2ZAS CRYSTAL STRUCTURE OF HUMAN ESTROGEN-RELATED RECEPTOR GAMMA L; PMID:;
67.          345          539          34          35.86          5.0e-22
     Pdb:2GPP ESTROGEN RELATED RECEPTOR-GAMMA LIGAND BINDING DOMAIN COMPLE; PMID:;
     Pdb:2GPO ESTROGEN RELATED RECEPTOR-GAMMA LIGAND BINDING DOMAIN COMPLE; PMID:;
     Pdb:2GPU ESTROGEN RELATED RECEPTOR-GAMMA LIGAND BINDING DOMAIN COMPLE; PMID:;
     Pdb:2GPV ESTROGEN RELATED RECEPTOR-GAMMA LIGAND BINDING DOMAIN COMPLE; PMID:;
     Pdb:1KV6 X-RAY STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR ERR3 LIGAND- ; PMID:9875847,11864604,11130180,9338790,11689423;
     Pdb:2GP7 ESTROGEN RELATED RECEPTOR-GAMMA LIGAND BINDING DOMAIN ; PMID:;
68.          345          539          34          35.86          7.0e-22
     Pdb:1S9P CRYSTAL STRUCTURE OF THE LIGAND-BINDING DOMAIN OF THE ESTROG; PMID:;
69.          345          539          34          35.86          8.0e-22
     Pdb:2EWP CRYSTAL STRUCTURE OF ESTROGEN RELATED RECEPTOR-3 (ERR-GAMMA); PMID:;
70.          345          540          33          36.04          8.0e-22
     Pdb:1S9Q CRYSTAL STRUCTURE OF THE LIGAND-BINDING DOMAIN OF THE ESTROG; PMID:;
71.          86          151          62          12.01          1.0e-21
     Pdb:2NLL RETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOM; PMID:7746322;
72.          86          157          61          13.12          5.0e-21
     Pdb:2EBL SOLUTION STRUCTURE OF THE ZINC FINGER, C4-TYPE DOMAIN OF HUM; PMID:;
73.          86          157          59          13.12          5.0e-21
     Pdb:1HRA THE SOLUTION STRUCTURE OF THE HUMAN RETINOIC ACID RECEPTOR- ; PMID:8387280,8383553,1321662;
 
NR homologs                 
No.    Start    End    Identity%    Coverage%    Evalue
1.          1          541          100          99.82          0.0e+00
     gi|4590402|gb|AAD26565.1| hepatocytic transcription fact;  PMID:9786908;
     gi|7676156|sp|O00482|NR5A2_HUMAN Orphan nuclear receptor NR5A2 ;  PMID:9786908,10359768,11595170,9858833;
     gi|10441620|gb|AAG17125.1| hepatocytic transcription fact;  PMID:11595170;
2.          300          541          100          44.55          0.0e+00
3.          297          541          100          45.10          0.0e+00
4.          41          541          99          92.42          0.0e+00
     gi|1947098|gb|AAD03155.1| alpha1-fetoprotein transcripti;  PMID:9858833;
5.          1          541          99          99.82          0.0e+00
     gi|3810967|dbj|BAA34092.1| FTZ-F1 related protein [Homo s;  PMID:;
6.          289          541          99          46.58          0.0e+00
7.          81          370          98          53.42          0.0e+00
     gi|2944393|gb|AAD03248.1| alpha1-fetoprotein transcripti;  PMID:9858833;
8.          41          541          97          92.42          0.0e+00
     gi|2541858|dbj|BAA22838.1| FTF/LRH-1 [Gallus gallus] ;  PMID:9332374;
     gi|3334187|sp|O42101|NR5A2_CHICK Orphan nuclear receptor NR5A2 ;  PMID:9332374;
     gi|45384182|ref|NP_990409.1| nuclear receptor subfamily 5, ;  PMID:;
9.          1          541          96          99.82          0.0e+00
     gi|76638184|ref|XP_615597.2| PREDICTED: similar to nuclear ;  PMID:;
10.          35          541          93          93.53          0.0e+00
     gi|73960522|ref|XP_547371.2| PREDICTED: similar to nuclear ;  PMID:;
11.          78          541          93          85.58          0.0e+00
     gi|451663|gb|AAA18357.1| Ftz-F1-related orphan receptor;  PMID:8139576;
12.          41          541          92          92.42          0.0e+00
     gi|7416831|dbj|BAA94077.1| FTZ-F1 alpha [Rana rugosa] ;  PMID:10806365;
13.          41          541          92          92.42          0.0e+00
     gi|54038250|gb|AAH84495.1| Ftz-F1-related orphan receptor;  PMID:;
14.          73          541          92          86.51          0.0e+00
     gi|7416833|dbj|BAA94078.1| FTZ-F1 beta [Rana rugosa] ;  PMID:10806365;
15.          41          541          91          92.42          0.0e+00
16.          41          541          91          92.42          0.0e+00
     gi|451661|gb|AAA18356.1| Ftz-F1-related orphan receptor;  PMID:;
     gi|1362680|pir||A56543 Ftz-F1-related orphan receptor;  PMID:8139576;
17.          1          541          91          99.82          0.0e+00
     gi|5002242|gb|AAD37378.1| CYP7A promoter binding factor ;  PMID:10359768;
     gi|10441619|gb|AAG17124.1| hepatocytic transcription fact;  PMID:11595170;
     gi|4504343|ref|NP_003813.1| nuclear receptor subfamily 5, ;  PMID:12820970,10359768,9858833,9786908;
     gi|3916048|gb|AAC78727.1| hepatocytic transcription fact;  PMID:9786908;
18.          1          541          90          99.82          0.0e+00
     gi|4107119|dbj|BAA36340.1| FTZ-F1 beta2 [Rattus norvegicu;  PMID:;
19.          41          370          90          60.81          0.0e+00
     gi|727415|gb|AAA64285.1| FTZ-F1-related nuclear orphan ;  PMID:;
20.          1          541          90          99.82          0.0e+00
     gi|11493783|gb|AAG35649.1| steroidogenic factor 2 [Equus ;  PMID:11108279;
21.          1          541          88          99.82          0.0e+00
     gi|76638186|ref|XP_883278.1| PREDICTED: similar to nuclear ;  PMID:;
22.          41          541          87          92.42          0.0e+00
     gi|84469418|dbj|BAE71417.1| FTZ-F1 related protein [Oncorh;  PMID:;
23.          1          541          86          99.82          0.0e+00
     gi|13492975|ref|NP_068510.1| FTZ-F1 beta1 protein [Rattus n;  PMID:12865342,8668203;
     gi|4107117|dbj|BAA36339.1| FTZ-F1 beta1 [Rattus norvegicu;  PMID:;
24.          1          541          86          99.82          0.0e+00
     gi|14010847|ref|NP_109601.1| nuclear receptor subfamily 5, ;  PMID:12672674,12456679,12482977,11145965;
     gi|7676159|sp|P45448|NR5A2_MOUSE Orphan nuclear receptor NR5A2 ;  PMID:;
     gi|284971|pir||S27874 steroid hormone receptor homol;  PMID:;
     gi|198875|gb|AAA39447.1| liver receptor homologue [Mus ;  PMID:12672674;
25.          73          541          85          86.51          0.0e+00
     gi|94959279|gb|ABF47516.1| steroidogenic factor 1 [Odonte;  PMID:;
26.          41          541          85          92.42          0.0e+00
     gi|15145791|gb|AAK54449.1| nuclear receptor FF1aE [Danio ;  PMID:;
27.          41          538          85          91.87          0.0e+00
28.          41          541          85          92.42          0.0e+00
     gi|74273322|gb|ABA01329.1| LRH-1 [Oryzias latipes] ;  PMID:;
29.          62          541          84          88.54          0.0e+00
     gi|86620853|gb|AAP84609.2| steroidogenic factor 1 [Odonte;  PMID:;
30.          73          371          84          55.08          0.0e+00
     gi|47207712|emb|CAF92683.1| unnamed protein product [Tetra;  PMID:;
31.          41          541          83          92.42          0.0e+00
     gi|2429328|gb|AAC60274.1| FTZ-F1 homolog [Danio rerio] ;  PMID:9178748;
     gi|24158439|ref|NP_571538.1| nuclear receptor subfamily 5, ;  PMID:11178880,10704877,9178748;
32.          74          540          71          86.14          0.0e+00
     gi|4104218|gb|AAD01975.1| steroidogenic factor 1 [Trache;  PMID:;
33.          74          540          70          86.14          0.0e+00
     gi|2541860|dbj|BAA22839.1| SF-1/Ad4BP [Gallus gallus] ;  PMID:9332374;
     gi|45384188|ref|NP_990408.1| nuclear receptor subfamily 5, ;  PMID:;
34.          74          541          70          86.32          0.0e+00
35.          74          540          70          86.14          0.0e+00
     gi|4586618|dbj|BAA76713.1| SF-1/Ad4BP [Gallus gallus] ;  PMID:10231566;
36.          74          540          70          86.14          0.0e+00
     gi|15426034|gb|AAK97659.1| steroidogenic factor 1 [Taenio;  PMID:11906934;
37.          74          541          68          86.32          0.0e+00
     gi|4126870|dbj|BAA36789.1| SF-1/Ad4BP [Rana rugosa] ;  PMID:9831646;
38.          74          540          66          86.14          0.0e+00
     gi|15290639|gb|AAK94918.1| steroidogenic factor 1; adrena;  PMID:11602358;
39.          72          541          66          86.69          0.0e+00
     gi|3426019|dbj|BAA32394.1| FTZ-F1 [Oryzias latipes] ;  PMID:;
40.          72          541          65          86.69          0.0e+00
     gi|30089291|dbj|BAC75890.1| SF-1/Ad4BP [Oreochromis niloti;  PMID:12606465;
41.          72          541          65          86.69          0.0e+00
     gi|76160806|gb|ABA39863.1| SF-1 [Oreochromis aureus] ;  PMID:;
42.          64          541          64          88.17          0.0e+00
     gi|58983110|gb|AAW83490.1| fushi tarazu factor 1 [Oncorhy;  PMID:;
43.          74          540          63          86.14          0.0e+00
     gi|22023902|gb|AAM89250.1| FTZ-F1 [Carassius auratus] ;  PMID:;
44.          72          538          62          86.14          0.0e+00
45.          74          540          61          86.14          0.0e+00
     gi|2077920|dbj|BAA13546.1| AdBP4 [Homo sapiens] ;  PMID:;
     gi|2119673|pir||JC4972 steroidogenic factor 1 - human;  PMID:8806624;
46.          74          540          61          86.14          0.0e+00
     gi|21618439|gb|AAH32501.1| Nuclear receptor subfamily 5, ;  PMID:;
     gi|2052388|gb|AAB53105.1| steroidogenic factor 1 [Homo s;  PMID:;
     gi|55859654|emb|CAI10959.1| nuclear receptor subfamily 5, ;  PMID:;
     gi|3121738|sp|Q13285|STF1_HUMAN Steroidogenic factor 1 (STF-1);  PMID:8806624,12477932,10369247;
     gi|20070193|ref|NP_004950.2| nuclear receptor subfamily 5, ;  PMID:12727988,12101186,12161505,12083815,12083805,11932325,11932209,11886523,11738790,10369247,9590178,8806624,7789992,8205615;
47.          74          540          61          86.14          0.0e+00
     gi|28916416|gb|AAO59489.1| Ff1d [Danio rerio] ;  PMID:;
     gi|33468585|emb|CAE30391.1| novel protein similar to Caras;  PMID:;
48.          72          541          61          86.69          0.0e+00
     gi|47214970|emb|CAG01304.1| unnamed protein product [Tetra;  PMID:;
49.          74          540          61          86.14          0.0e+00
     gi|1082984|pir||A46077 steroid hormone receptor Ad4BP;  PMID:8463279;
     gi|217432|dbj|BAA02764.1| Ad4BP [Bos taurus] ;  PMID:8463279;
     gi|27806027|ref|NP_776828.1| nuclear receptor subfamily 5, ;  PMID:8463279;
     gi|416584|sp|Q04752|STF1_BOVIN Steroidogenic factor 1 (STF-1);  PMID:8463279,1406703;
50.          74          540          60          86.14          0.0e+00
     gi|1703163|sp|P33242|STF1_MOUSE Steroidogenic factor 1 (STF-1);  PMID:1545809,8413309,8395013;
51.          83          532          60          82.99          0.0e+00
     gi|10945629|gb|AAG24622.1| steroidogenic factor 1 [Ovis a;  PMID:;
52.          69          541          60          87.25          0.0e+00
     gi|17223547|gb|AAG49005.1| fushi-tarazu factor 1-B [Clari;  PMID:;
53.          74          540          60          86.14          0.0e+00
     gi|11493781|gb|AAG35648.1| steroidogenic factor 1 [Equus ;  PMID:11108279;
54.          74          540          60          86.14          0.0e+00
     gi|1703164|sp|P50569|STF1_RAT Steroidogenic factor 1 (STF-1);  PMID:7706291;
     gi|18373318|ref|NP_445796.1| nuclear receptor subfamily 5, ;  PMID:12865342,7706291;
     gi|1449196|dbj|BAA07722.1| Ad4BP [Rattus norvegicus] ;  PMID:7706291;
     gi|1363330|pir||A56120 steroid hormone receptor Ad4BP;  PMID:8395654,7706291;
55.          74          540          60          86.14          0.0e+00
     gi|20827192|ref|XP_130231.1| (XM_130231) embryonal long ter;  PMID:;
     gi|425577|gb|AAB28338.1| steroidogenic factor 1; SF-1 [;  PMID:8413309;
     gi|21217551|gb|AAM43952.1| steroidogenic factor-1 [Mus mu;  PMID:12239114;
     gi|476804|pir||A40716 steroid hormone receptor Ad4BP;  PMID:8413309;
     gi|20522231|ref|NP_620639.1| nuclear receptor subfamily 5, ;  PMID:12732619,12851310,12697720,12727442,12651892,12482977,12456803,12530657,12530656,12351700,12239114,12130543,12050120,11932209,11923473,11923472,11875113,11861512,11738791,11738790,8543574,8413309,1545809;
56.          74          540          60          86.14          0.0e+00
     gi|3757499|gb|AAC64209.1| steroidogenic factor-1 SF-1 [S;  PMID:9724033;
     gi|18202368|sp|P79387|STF1_PIG Steroidogenic factor 1 (STF-1);  PMID:9724033;
     gi|47523442|ref|NP_999344.1| steroidogenic factor-1 SF-1 [S;  PMID:;
57.          74          540          60          86.14          0.0e+00
     gi|74142710|dbj|BAE33893.1| unnamed protein product [Mus m;  PMID:;
58.          74          541          60          86.32          0.0e+00
     gi|17223545|gb|AAG49004.1| fushi tarazu factor 1-A [Clari;  PMID:;
59.          69          541          60          87.25          0.0e+00
     gi|66356139|gb|AAY45704.1| nuclear receptor subfamily 5 g;  PMID:;
60.          74          540          59          86.14          0.0e+00
     gi|1805353|dbj|BAA19127.1| ELP3 [Mus musculus] ;  PMID:8543574;
     gi|20522229|ref|NP_620638.1| (NM_139050) embryonal long ter;  PMID:1545809,8413309,8543574;
61.          74          539          59          85.95          0.0e+00
     gi|7243339|gb|AAF43283.1| ff1b [Danio rerio] ;  PMID:10704877;
     gi|24119283|ref|NP_571869.1| nuclear receptor subfamily 5, ;  PMID:11178880,10704877;
62.          77          540          57          85.58          0.0e+00
     gi|73968224|ref|XP_852030.1| PREDICTED: similar to nuclear ;  PMID:;
63.          74          541          53          86.32          0.0e+00
64.          83          539          52          84.29          0.0e+00
65.          83          541          48          84.66          1.0e-128
66.          149          541          59          72.46          1.0e-127
67.          62          540          50          88.35          1.0e-126
     gi|72094401|ref|XP_791919.1| PREDICTED: similar to nuclear ;  PMID:;
68.          294          541          87          45.66          1.0e-122
69.          106          355          85          46.03          1.0e-121
70.          106          355          84          46.03          1.0e-120
71.          299          541          88          44.73          1.0e-119
72.          66          279          93          39.37          1.0e-115
     gi|1408464|gb|AAC52645.1| alpha1-fetoprotein transcripti;  PMID:8668203;
73.          74          410          60          62.11          1.0e-107
     gi|425578|gb|AAB28339.1| embryonal long terminal repeat;  PMID:8413309;
74.          74          411          59          62.29          1.0e-105
     gi|284743|pir||A42128 embryonal long terminal repeat;  PMID:1545809;
     gi|220401|dbj|BAA01441.1| embryonal LTR binding protein ;  PMID:1545809;
     gi|6997235|ref|NP_032076.1| (NM_008050) embryonal long ter;  PMID:1545809,8413309,8543574;
75.          80          540          42          85.03          1.0e-101
     gi|91079742|ref|XP_970369.1| PREDICTED: similar to CG4059-P;  PMID:;
76.          82          540          43          84.66          8.0e-97
     gi|17979670|gb|AAL50351.1| nuclear hormone receptor betaF;  PMID:11378418;
77.          82          540          42          84.66          2.0e-96
     gi|44889025|sp|P49867|FTZF1_BOMMO Nuclear hormone receptor FTZ-F;  PMID:8150206;
     gi|16903866|gb|AAL30663.1| ecdysone response nuclear rece;  PMID:11976953;
78.          83          540          42          84.47          5.0e-96
     gi|54642250|gb|EAL30999.1| GA17924-PA [Drosophila pseudoo;  PMID:;
79.          82          540          41          84.66          9.0e-96
     gi|8980871|gb|AAF82307.1| nuclear receptor FTZ-F1 protei;  PMID:10898964;
80.          71          243          96          31.79          4.0e-95
     gi|27803710|gb|AAO21918.1| nuclear receptor subfamily 5 g;  PMID:;
81.          74          411          56          62.29          4.0e-94
82.          164          358          83          35.86          7.0e-88
83.          82          539          39          84.47          9.0e-88
84.          82          511          41          79.30          6.0e-83
     gi|433191|dbj|BAA01745.1| BmFTZ-F1 protein [Bombyx mori];  PMID:8150206;
85.          300          540          60          44.36          6.0e-79
86.          299          540          59          44.55          2.0e-78
87.          300          540          60          44.36          1.0e-77
88.          306          540          60          43.25          2.0e-76
89.          295          540          59          45.29          4.0e-76
90.          174          349          81          32.35          2.0e-75
91.          174          349          80          32.35          4.0e-75
92.          174          349          80          32.35          1.0e-74
93.          174          349          80          32.35          3.0e-74
94.          107          370          54          48.61          8.0e-70
95.          74          262          64          34.75          3.0e-64
     gi|2982698|dbj|BAA25269.1| tFZR1 [Oncorhynchus mykiss] ;  PMID:9512659;
96.          74          194          89          22.18          5.0e-61
97.          79          187          100          19.96          3.0e-60
     gi|83753936|pdb|2A66|A Chain A, Human Liver Receptor ;  PMID:;
98.          156          540          37          70.98          5.0e-57
     gi|55238465|gb|EAA11812.2| ENSANGP00000007312 [Anopheles ;  PMID:;
     gi|58387596|ref|XP_315680.2| ENSANGP00000007312 [Anopheles ;  PMID:;
99.          83          538          33          84.10          1.0e-56
     gi|73967652|ref|XP_548399.2| PREDICTED: similar to Retinoic;  PMID:;
100.          83          538          32          84.10          7.0e-53
     gi|76631078|ref|XP_887036.1| PREDICTED: similar to Retinoic;  PMID:;
101.          83          184          91          18.67          6.0e-52
     gi|99032236|pdb|2FF0|A Chain A, Solution Structure Of;  PMID:;
102.          86          538          31          83.55          8.0e-52
103.          86          536          30          83.18          1.0e-49
     gi|3834346|dbj|BAA34123.1| hormone receptor 39 [Bombyx mo;  PMID:;
104.          83          209          70          23.29          2.0e-49
105.          370          514          65          26.62          4.0e-48
106.          1          107          85          19.59          2.0e-47
107.          86          196          80          20.33          7.0e-47
     gi|55238464|gb|EAA10926.2| ENSANGP00000021652 [Anopheles ;  PMID:;
108.          371          527          57          28.84          7.0e-45
109.          411          540          70          23.84          3.0e-44
110.          298          540          39          44.73          6.0e-44
     gi|45644987|sp|P33244|FTZF1_DROME Nuclear hormone receptor FTZ-F;  PMID:1709303,8164672,1448096,9020363,9020364;
     gi|24666434|ref|NP_524143.2| ftz transcription factor 1 CG4;  PMID:10731132;
     gi|157458|gb|AAA28542.1| FTZ-F1 ;  PMID:1709303;
     gi|7511864|pir||T13733 FTZ-F1 protein - fruit fly (Dr;  PMID:1709303;
     gi|23093168|gb|AAF49231.2| CG4059-PB, isoform B [Drosophi;  PMID:10731132;
111.          298          540          39          44.73          6.0e-44
112.          298          540          39          44.73          6.0e-44
     gi|24666438|ref|NP_730359.1| ftz transcription factor 1 CG4;  PMID:10731132;
     gi|23093169|gb|AAN11667.1| CG4059-PA, isoform A [Drosophi;  PMID:10731132;
113.          86          539          27          83.73          6.0e-44
     gi|290226|gb|AAA28543.1| steroid receptor ;  PMID:;
114.          86          539          27          83.73          6.0e-44
     gi|24585624|ref|NP_724322.1| Hormone receptor-like in 39 CG;  PMID:;
115.          86          539          27          83.73          6.0e-43
     gi|157236|gb|AAA28464.1| DHR39 ;  PMID:;
116.          84          185          74          18.67          3.0e-42
     gi|7677120|gb|AAF67040.1| NHR-25 [Caenorhabditis elegans;  PMID:;
117.          83          510          27          78.93          3.0e-41
118.          79          510          26          79.67          3.0e-41
119.          79          519          29          81.33          4.0e-41
     gi|91077278|ref|XP_974320.1| PREDICTED: similar to Hormone ;  PMID:;
120.          79          519          28          81.33          1.0e-40
     gi|58390999|ref|XP_318161.2| ENSANGP00000003675 [Anopheles ;  PMID:;
     gi|55236934|gb|EAA13230.2| ENSANGP00000003675 [Anopheles ;  PMID:;
121.          74          510          26          80.59          2.0e-40
122.          79          510          26          79.67          7.0e-40
123.          72          540          28          86.51          4.0e-39
124.          74          154          86          14.79          1.0e-38
     gi|44894133|gb|AAS48621.1| nuclear receptor AdBP4 [Homo s;  PMID:;
125.          69          160          78          16.82          1.0e-38
     gi|83284975|gb|ABC02085.1| nuclear receptor subfamily 5 g;  PMID:;
126.          79          508          27          79.30          6.0e-38
127.          410          540          60          24.03          2.0e-37
128.          79          510          27          79.67          2.0e-37
129.          83          510          27          78.93          3.0e-37
130.          79          519          26          81.33          7.0e-37
131.          86          414          30          60.63          1.0e-36
     gi|54644407|gb|EAL33148.1| GA21254-PA [Drosophila pseudoo;  PMID:;
132.          86          535          27          82.99          6.0e-36
133.          285          373          84          16.27          2.0e-35
134.          418          533          65          21.26          2.0e-35
135.          51          458          27          75.23          6.0e-35
     gi|66505503|ref|XP_394401.2| PREDICTED: similar to thr4 [Ap;  PMID:;
136.          298          517          36          40.48          3.0e-34
     gi|304811|gb|AAA28915.1| steroid receptor beta FTZ-F1 ;  PMID:1709303,8096644;
137.          294          540          36          45.47          5.0e-34
     gi|5306097|gb|AAD41899.1| fushi tarazu-factor 1 [Metapen;  PMID:;
138.          85          510          28          78.56          6.0e-33
139.          85          510          28          78.56          6.0e-33
140.          378          499          58          22.37          2.0e-32
141.          43          206          42          30.13          3.0e-31
142.          79          215          45          25.14          1.0e-30
143.          345          536          40          35.30          2.0e-30
144.          345          538          41          35.67          8.0e-30
145.          345          538          41          35.67          8.0e-30
146.          345          538          41          35.67          8.0e-30
147.          345          538          41          35.67          8.0e-30
148.          345          538          41          35.67          8.0e-30
149.          345          538          41          35.67          8.0e-30
150.          345          538          41          35.67          8.0e-30
     gi|1943526|pdb|1LBD| Ligand-Binding Domain Of The H;  PMID:;
151.          345          538          41          35.67          8.0e-30
152.          86          154          85          12.57          1.0e-29
153.          345          538          41          35.67          1.0e-29
154.          41          107          88          12.20          2.0e-29
155.          86          172          62          15.90          2.0e-29
     gi|17136822|ref|NP_476933.1| Hormone receptor-like in 39 CG;  PMID:;
156.          345          536          41          35.30          2.0e-29
157.          86          521          26          80.41          2.0e-29
158.          345          538          40          35.67          3.0e-29
159.          86          521          26          80.41          7.0e-29
160.          345          536          39          35.30          1.0e-28
161.          345          538          40          35.67          2.0e-28
162.          345          538          38          35.67          2.0e-28
163.          345          538          38          35.67          2.0e-28
164.          345          538          38          35.67          2.0e-28
165.          345          538          38          35.67          2.0e-28
166.          301          539          32          43.99          4.0e-26
167.          83          163          59          14.79          2.0e-25
     gi|41282088|ref|NP_571292.2| retinoid x receptor, alpha [Da;  PMID:10207156,9537416,9192646,7565671;
     gi|37590367|gb|AAH59576.1| Retinoid x receptor, alpha [Da;  PMID:;
     gi|52788288|sp|Q90416|RXRA_BRARE Retinoic acid receptor RXR-alp;  PMID:7565671;
168.          83          163          59          14.79          2.0e-25
     gi|2133901|pir||I50515 retinoid X receptor alpha - ze;  PMID:7565671;
     gi|1046295|gb|AAC59720.1| retinoid X receptor alpha ;  PMID:7565671;
     gi|1583308|prf||2120366C retinoid X receptor:ISOTYPE=al;  PMID:7565671;
169.          83          220          40          25.32          3.0e-25
     gi|76631076|ref|XP_584188.2| PREDICTED: similar to Retinoic;  PMID:;
170.          19          162          43          26.43          4.0e-25
     gi|70907499|emb|CAH69897.1| retinoid X receptor [Blattella;  PMID:;
171.          19          162          43          26.43          4.0e-25
     gi|70907501|emb|CAH69898.1| retinoid X receptor [Blattella;  PMID:;
172.          345          539          33          35.86          6.0e-25
173.          83          163          59          14.79          8.0e-25
     gi|73967650|ref|XP_859036.1| PREDICTED: similar to Retinoic;  PMID:;
174.          83          163          59          14.79          8.0e-25
     gi|84579197|dbj|BAE73032.1| hypothetical protein [Macaca f;  PMID:;
175.          83          163          59          14.79          8.0e-25
176.          83          163          59          14.79          8.0e-25
     gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculus] ;  PMID:;
     gi|1685273|gb|AAB36778.1| RXR alpha 3 [Mus musculus] ;  PMID:;
     gi|94368025|ref|XP_981799.1| PREDICTED: similar to Retinoic;  PMID:;
177.          83          163          59          14.79          8.0e-25
     gi|6981496|ref|NP_036937.1| retinoid X receptor alpha [Rat;  PMID:12593720,12425954,12005039,8381967;
     gi|464702|sp|Q05343|RXRA_RAT Retinoic acid receptor RXR-alp;  PMID:8381967;
     gi|424002|pir||A47278 retinoid X receptor alpha - ra;  PMID:8381967;
     gi|206819|gb|AAA42093.1| retinoid X receptor alpha ;  PMID:8381967;
178.          83          163          59          14.79          8.0e-25
     gi|133702|sp|P28700|RXRA_MOUSE Retinoic acid receptor RXR-alp;  PMID:1310259,1312497,10788465;
     gi|285010|pir||S26668 retinoic acid receptor X-alpha;  PMID:1310259,1312497,7838715;
     gi|6755384|ref|NP_035435.1| retinoid X receptor alpha [Mus;  PMID:12746291,12753917,12581641,12297106,12015306,12093741,12054477,1312497,1310259;
     gi|200878|gb|AAA40080.1| retinoid X receptor alpha ;  PMID:1310259;
     gi|54022|emb|CAA46962.1| retinoid X receptor-alpha [Mus;  PMID:1312497;
179.          83          163          59          14.79          8.0e-25
     gi|55663362|emb|CAH70571.1| retinoid X receptor, alpha [Ho;  PMID:;
     gi|226861|prf||1609194A retinoic acid receptor RXRalph;  PMID:2159111;
     gi|4506755|ref|NP_002948.1| retinoid X receptor, alpha [Ho;  PMID:12393611,12485829,12235159,12297106,12145331,12097375,11981034,11972046,11929748,11855864,11839661,10694476,9694878,8034312,8257089,1310260,1651173,2159111;
     gi|133701|sp|P19793|RXRA_HUMAN Retinoic acid receptor RXR-alp;  PMID:2159111,1310260,9267036,10567404,7746322,7760929,9698548;
     gi|35885|emb|CAA36982.1| unnamed protein product [Homo ;  PMID:2159111;
180.          83          163          59          14.79          8.0e-25
     gi|94366203|ref|XP_995211.1| PREDICTED: similar to Retinoic;  PMID:;
181.          83          163          59          14.79          8.0e-25
     gi|73967648|ref|XP_859001.1| PREDICTED: similar to Retinoic;  PMID:;
182.          83          163          59          14.79          8.0e-25
     gi|73967646|ref|XP_858958.1| PREDICTED: similar to Retinoic;  PMID:;
183.          83          163          59          14.79          8.0e-25
     gi|73967644|ref|XP_858917.1| PREDICTED: similar to Retinoic;  PMID:;
184.          83          163          59          14.79          8.0e-25
     gi|73967642|ref|XP_858879.1| PREDICTED: similar to Retinoic;  PMID:;
185.          83          163          59          14.79          8.0e-25
     gi|73967640|ref|XP_858840.1| PREDICTED: similar to Retinoic;  PMID:;
186.          83          163          59          14.79          8.0e-25
     gi|73967638|ref|XP_858806.1| PREDICTED: similar to Retinoic;  PMID:;
187.          83          163          59          14.79          8.0e-25
     gi|73967630|ref|XP_858650.1| PREDICTED: similar to Retinoic;  PMID:;
188.          83          163          59          14.79          8.0e-25
     gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning v;  PMID:;
189.          83          163          59          14.79          8.0e-25
     gi|74194825|dbj|BAE26004.1| unnamed protein product [Mus m;  PMID:;
190.          83          163          59          14.79          8.0e-25
     gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [Cl;  PMID:;
191.          83          163          59          14.79          8.0e-25
     gi|83026436|gb|ABB96254.1| retinoid X receptor, alpha [Ho;  PMID:;
192.          83          163          59          14.79          8.0e-25
     gi|76631074|ref|XP_873813.1| PREDICTED: similar to Retinoic;  PMID:;
193.          83          207          39          22.92          1.0e-24
     gi|62860048|ref|NP_001015937.1| retinoid X receptor, beta [Xen;  PMID:;
194.          83          163          58          14.79          2.0e-24
     gi|83638436|gb|ABC33911.1| retinoid X receptor alpha tran;  PMID:;
195.          83          163          58          14.79          2.0e-24
     gi|1710719|sp|P51128|RXRA_XENLA Retinoic acid receptor RXR-alp;  PMID:1312717,9658407;
196.          83          162          58          14.60          2.0e-24
     gi|1046289|gb|AAC59719.1| retinoid X receptor ;  PMID:7565671;
     gi|18859345|ref|NP_571228.1| retinoid x receptor, gamma [Da;  PMID:7565671;
     gi|2133899|pir||I50514 retinoid X receptor - zebra fi;  PMID:7565671;
197.          83          162          58          14.60          2.0e-24
     gi|1583309|prf||2120366D retinoid X receptor:ISOTYPE=ga;  PMID:7565671;
198.          83          163          58          14.79          2.0e-24
     gi|283824|pir||C41977 retinoid receptor alpha - Afri;  PMID:1312717;
199.          83          163          56          14.79          2.0e-24
200.          83          163          56          14.79          2.0e-24
201.          83          163          56          14.79          2.0e-24
     gi|76649867|ref|XP_883078.1| PREDICTED: similar to retinoid;  PMID:;
202.          83          163          56          14.79          2.0e-24
203.          83          163          56          14.79          2.0e-24
     gi|73972502|ref|XP_862727.1| PREDICTED: similar to retinoid;  PMID:;
204.          83          163          56          14.79          2.0e-24
     gi|73972500|ref|XP_862708.1| PREDICTED: similar to retinoid;  PMID:;
205.          83          163          56          14.79          2.0e-24
     gi|76649873|ref|XP_883211.1| PREDICTED: similar to retinoid;  PMID:;
206.          83          163          56          14.79          2.0e-24
     gi|62088068|dbj|BAD92481.1| retinoid X receptor, beta vari;  PMID:;
207.          83          163          56          14.79          2.0e-24
     gi|73972504|ref|XP_862754.1| PREDICTED: similar to retinoid;  PMID:;
208.          83          162          58          14.60          4.0e-24
     gi|68396885|ref|XP_683221.1| PREDICTED: similar to retinoid;  PMID:;
209.          83          162          58          14.60          4.0e-24
     gi|68132036|gb|AAY85284.1| RXRalpha-B [Danio rerio] ;  PMID:;
210.          83          223          40          25.88          4.0e-24
     gi|49902731|gb|AAH75918.1| Zgc:92183 [Danio rerio] ;  PMID:;
211.          484          541          93          10.54          5.0e-24
212.          83          163          56          14.79          5.0e-24
     gi|71051362|gb|AAH99003.1| Rxrb-A-prov protein [Xenopus l;  PMID:;
213.          83          163          56          14.79          5.0e-24
214.          83          163          56          14.79          5.0e-24
     gi|83318203|gb|AAI08461.1| Unknown (protein for IMAGE:720;  PMID:;
215.          83          163          56          14.79          5.0e-24
     gi|840922|emb|CAA60792.1| retinoid X receptor beta [Xeno;  PMID:9362469;
216.          83          162          57          14.60          9.0e-24
     gi|33386531|emb|CAD45002.1| retinoid X receptor beta [Taki;  PMID:;
217.          83          162          57          14.60          9.0e-24
218.          83          162          57          14.60          9.0e-24
     gi|19386469|gb|AAL86461.1| RXR-like protein [Biomphalaria;  PMID:;
219.          82          162          56          14.79          9.0e-24
     gi|74006084|ref|XP_859397.1| PREDICTED: similar to Retinoic;  PMID:;
220.          82          162          56          14.79          9.0e-24
     gi|74006098|ref|XP_859637.1| PREDICTED: similar to Retinoic;  PMID:;
221.          82          162          56          14.79          9.0e-24
     gi|74006096|ref|XP_536146.2| PREDICTED: similar to Retinoic;  PMID:;
222.          83          163          56          14.79          9.0e-24
223.          82          162          56          14.79          9.0e-24
     gi|74006088|ref|XP_859470.1| PREDICTED: similar to Retinoic;  PMID:;
224.          82          162          56          14.79          1.0e-23
225.          82          162          56          14.79          1.0e-23
226.          82          162          56          14.79          1.0e-23
     gi|386369|gb|AAB27245.1| retinoid-X receptor-gamma isof;  PMID:8391126;
227.          82          162          56          14.79          1.0e-23
     gi|386367|gb|AAB27244.1| retinoid-X receptor-gamma isof;  PMID:8391126;
     gi|20829543|ref|XP_123565.1| (XM_123565) retinoid X recepto;  PMID:;
     gi|200882|gb|AAA40082.1| retinoid X receptor-gamma ;  PMID:1310259;
     gi|1350914|sp|P28705|RXRG_MOUSE Retinoic acid receptor RXR-gam;  PMID:1310259,1312497,8391126;
     gi|6677829|ref|NP_033133.1| retinoid X receptor gamma [Mus;  PMID:10444330,8391126,1312497,1310259;
     gi|482974|pir||B41727 retinoid-X receptor-gamma - mo;  PMID:1310259,8391126;
228.          82          162          56          14.79          1.0e-23
     gi|54026|emb|CAA46964.1| retinoid X receptor-gamma [Mus;  PMID:1312497;
     gi|285012|pir||S26670 retinoic acid receptor X-gamma;  PMID:1312497;
229.          82          162          56          14.79          1.0e-23
230.          82          162          56          14.79          1.0e-23
     gi|1350913|sp|P48443|RXRG_HUMAN Retinoic acid receptor RXR-gam;  PMID:12477932;
     gi|9588167|emb|CAC00596.1| retinoid X receptor, gamma [Ho;  PMID:;
     gi|5902068|ref|NP_008848.1| retinoid X receptor, gamma iso;  PMID:11839661,8034312,1312497;
     gi|1053069|gb|AAA80681.1| retinoid X receptor-gamma ;  PMID:1312497;
     gi|15082315|gb|AAH12063.1| Retinoid X receptor, gamma [Ho;  PMID:;
231.          82          223          39          26.06          1.0e-23
     gi|76611745|ref|XP_881099.1| PREDICTED: similar to Retinoic;  PMID:;
232.          82          223          39          26.06          1.0e-23
     gi|76611765|ref|XP_881728.1| PREDICTED: similar to Retinoic;  PMID:;
233.          73          162          52          16.45          2.0e-23
     gi|1710810|sp|P51129|RXRG_XENLA Retinoic acid receptor RXR-gam;  PMID:1312717;
     gi|283825|pir||D41977 retinoid receptor gamma - Afri;  PMID:1312717;
234.          345          536          35          35.30          6.0e-23
235.          83          166          53          15.34          1.0e-22
     gi|21310111|gb|AAM46151.1| nuclear hormone receptor RXR [;  PMID:;
236.          83          155          60          13.31          3.0e-22
     gi|73967628|ref|XP_858605.1| PREDICTED: similar to Retinoic;  PMID:;
237.          82          160          55          14.42          3.0e-22
238.          345          536          33          35.30          3.0e-22
239.          82          155          58          13.49          6.0e-22
240.          82          155          58          13.49          1.0e-21
241.          82          165          51          15.34          1.0e-21
     gi|74006094|ref|XP_859571.1| PREDICTED: similar to Retinoic;  PMID:;
242.          83          163          49          14.79          1.0e-21
     gi|76649859|ref|XP_882914.1| PREDICTED: similar to retinoid;  PMID:;
243.          97          162          59          12.01          8.0e-19
     gi|72006437|ref|XP_784246.1| PREDICTED: similar to Retinoic;  PMID:;
244.          106          163          62          10.54          6.0e-15
     gi|16580815|dbj|BAB71758.1| retinoid X receptor alpha [Par;  PMID:;
245.          224          536          23          57.67          6.0e-11
     gi|39594248|emb|CAE70358.1| Hypothetical protein CBG16911 ;  PMID:;
246.          120          162          62          7.76          5.0e-09
     gi|27819113|gb|AAO22211.1| retinoid X receptor alpha [Car;  PMID:;
247.          305          536          26          42.70          5.0e-09
     gi|3875724|emb|CAA91028.1| Hypothetical protein F11C1.6a ;  PMID:9851916;
248.          305          536          26          42.70          5.0e-09
     gi|7677116|gb|AAF67038.1| NHR-25 alpha [Caenorhabditis e;  PMID:;
249.          1          23          100          4.07          3.0e-04
 

Notes: The reference system provides subject-oriented search and sequence-oriented search for reference collection. The reference filter supports the classification and selection of references. You can use a group of buttons to select references based on your interest or the relative level of references that are justified base on some criteria, e.g. trusted or high similairties. By deafult, PSCA shows the references whose levels are better than gathering or high similarity of reference classification.

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