||Protein Sequence Comparative Analysis (PSCA)|
|NM_002092 PDB Fold Similairty|
PDB sequences with significant alignments within target range (387 - 480). (Other protein annotations are based on the whole sequence)
Sequence information Score E-value 2LMI_A|pdb|JCSG3229738|G-rich sequence factor 1 216 2e-56 4QU7_A|pdb|JCSG3298234|G-rich sequence factor 1 169 3e-42 2LXU_A|pdb|JCSG3257019|Heterogeneous nuclear ribonucleoprot... 108 1e-23 2KG1_A|pdb|JCSG1488299|Heterogeneous nuclear ribonucleoprot... 107 2e-23 1WEZ_A|pdb|JCSG469954|Heterogeneous nuclear ribonucleoprot... 106 4e-23 2DB1_A|pdb|JCSG1482028|heterogeneous nuclear ribonucleoprot... 101 1e-21 2HGL_A|pdb|JCSG1488297|Heterogeneous nuclear ribonucleoprot... 100 2e-21 1WG5_A|pdb|JCSG469970|Heterogeneous nuclear ribonucleoprot... 100 2e-21 2HGM_A|pdb|JCSG1488298|Heterogeneous nuclear ribonucleoprot... 94 2e-19 2DHA_A|pdb|JCSG1491949|FLJ20171 protein 68 1e-11 2DGW_A|pdb|JCSG1491640|Probable RNA-binding protein 19 58 1e-08 1WEL_A|pdb|JCSG975252|RNA-binding protein 12 58 2e-08 2CQP_A|pdb|JCSG976093|RNA-binding protein 12 44 3e-04
Except the additional notes, the protein annotation is based on the whole protein sequence, not only on the selected fragment of target sequence. In this page, only the PDB sequences whose alignments fall in or overlap with the target range are displayed.
Homologous search is done using BLAST from NCBI BLAST against database pdbnr with expect (E-value cut-off) at 0.001. The structure of a PDB sequence may be fully or partly solved. The non-redundant database pdbnr consists of unique PDB sequences from the representative PDB chains. Each representative chain has the best structural coverage in the set of the same sequences. You could click a sequence ID to see all of PDB chains associated with the sequence ID plus sequence alignments and structural coverages.