Protein Sequence Comparative Analysis   (PSCA)
  Back to Target List
NM_002092 PDB Fold Similairty

PDB sequences with significant alignments within target range (140 - 347). (Other protein annotations are based on the whole sequence)

Sequence information                                           Score	E-value
2LMI_A|pdb|JCSG3229738|G-rich sequence factor 1                   216	2e-56
4QU7_A|pdb|JCSG3298234|G-rich sequence factor 1                   169	3e-42
2LXU_A|pdb|JCSG3257019|Heterogeneous nuclear ribonucleoprot...    108	1e-23
2KG1_A|pdb|JCSG1488299|Heterogeneous nuclear ribonucleoprot...    107	2e-23
1WEZ_A|pdb|JCSG469954|Heterogeneous nuclear ribonucleoprot...     106	4e-23
2DB1_A|pdb|JCSG1482028|heterogeneous nuclear ribonucleoprot...    101	1e-21
2HGL_A|pdb|JCSG1488297|Heterogeneous nuclear ribonucleoprot...    100	2e-21
1WG5_A|pdb|JCSG469970|Heterogeneous nuclear ribonucleoprot...     100	2e-21
2HGM_A|pdb|JCSG1488298|Heterogeneous nuclear ribonucleoprot...    94	2e-19
2DHA_A|pdb|JCSG1491949|FLJ20171 protein                           68	1e-11
2DGW_A|pdb|JCSG1491640|Probable RNA-binding protein 19            58	1e-08
1WEL_A|pdb|JCSG975252|RNA-binding protein 12                      58	2e-08
2DNN_A|pdb|JCSG1497584|RNA-binding protein 12                     55	1e-07
2CPY_A|pdb|JCSG976172|RNA-binding protein 12                      50	3e-06

Except the additional notes, the protein annotation is based on the whole protein sequence, not only on the selected fragment of target sequence. In this page, only the PDB sequences whose alignments fall in or overlap with the target range are displayed.
Homologous search is done using BLAST from NCBI BLAST against database pdbnr with expect (E-value cut-off) at 0.001. The structure of a PDB sequence may be fully or partly solved. The non-redundant database pdbnr consists of unique PDB sequences from the representative PDB chains. Each representative chain has the best structural coverage in the set of the same sequences. You could click a sequence ID to see all of PDB chains associated with the sequence ID plus sequence alignments and structural coverages.

Contact Webmaster JCSG Menu