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   ZP_02043836.1;SP17439A
Protein Sequence Comparative Analysis   (PSCA)
 
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ZP_02043836.1    PDB Fold Similairty





PDB sequences with significant alignments
Sequence information                                           Score	E-value
JCSG3280336|pdb|4KVF_A|Rhamnose ABC transporter, periplasmi...    369	e-102
JCSG3302417|pdb|4WZZ_A|Putative sugar ABC transporter, subs...    194	7e-50
JCSG455754|pdb|1TJY_A|sugar transport protein                     187	1e-47
JCSG3228743|pdb|3T95_A|Autoinducer 2-binding protein lsrB         182	2e-46
JCSG2883968|pdb|3EJW_A|SmLsrB                                     172	3e-43
JCSG3295418|pdb|4PZ0_A|sugar ABC transporter, sugar-binding...    171	5e-43
JCSG1583477|pdb|2QVC_A|Sugar ABC transporter, periplasmic s...    91	1e-18
JCSG1575759|pdb|2H3H_A|Sugar ABC transporter, periplasmic s...    91	1e-18
JCSG1672945|pdb|3C6Q_B|Sugar ABC transporter, periplasmic s...    89	3e-18
JCSG2863573|pdb|3D02_A|Putative LACI-type transcriptional r...    86	3e-17
JCSG3302414|pdb|4WUT_A|ABC transporter substrate binding pr...    86	5e-17
JCSG1539409|pdb|2IOY_A|Periplasmic sugar-binding protein          74	1e-13
JCSG3302528|pdb|4RXT_A|Sugar ABC transporter                      64	2e-10
JCSG213735|pdb|1DRK_A|D-RIBOSE-BINDING PROTEIN                    62	4e-10
JCSG213734|pdb|1DRJ_A|D-RIBOSE-BINDING PROTEIN                    61	1e-09
JCSG219349|pdb|1URP_A|D-RIBOSE-BINDING PROTEIN                    61	1e-09
JCSG213336|pdb|1DBP_A|D-RIBOSE-BINDING PROTEIN                    61	1e-09
JCSG3302533|pdb|4RY9_A|Periplasmic binding protein/LacI tra...    60	3e-09
JCSG1539394|pdb|2GX6_A|D-ribose-binding periplasmic protein       59	6e-09
JCSG3287094|pdb|4YV7_A|Periplasmic binding protein/LacI tra...    55	5e-08
...more
PDB sequence alignments
QUERY       7   ALGALSLTSALLMSACG----GGTSTQGSESSSGGD--ASGSYDVSSQ---------SIT 51
JCSG3280336 3   -------------AACG----GGTTkESTaNDAtAa--pSATtSAAADpnaplkeglKIA 43
JCSG3302417 39  -------------------------TptTaATTGGD--GyAT----Ta---------TyA 58
JCSG455754  2   ---------------------------------------------SAE---------rIA 7
JCSG3228743 2   ----------------------GSShHhhHhSSGlv--prGSH--mAE---------rIA 26
JCSG2883968 4   ----------------------------------------------------------IA 5
JCSG3295418 1   --------------------------------SNAD--kKkAdDVK------------FA 14
JCSG1583477     ------------------------------------------------------------
JCSG1575759     ------------------------------------------------------------
JCSG1672945     ------------------------------------------------------------
JCSG2863573     ------------------------------------------------------------
JCSG3302414 8   -------------------------------SSGvDlgTENlYfqSmg---------EIA 27
JCSG1539409 2   -----------------------------------------------K---------TIg 5
JCSG3302528 6   ---------------------------------------------------------TIp 8
JCSG213735  3   ---------------------------------------------------------TIA 5
JCSG213734  3   ---------------------------------------------------------TIA 5
JCSG219349  3   ---------------------------------------------------------TIA 5
JCSG213336  3   ---------------------------------------------------------TIA 5
JCSG3302533     ------------------------------------------------------------
JCSG1539394 4   ---------------------------------------------------------TIA 6
JCSG3287094 6   ALSGIALgAAMaLSftGcsvpGddAAQNApvvDGAl--kiGfsQATQQ---------Spf 54

QUERY       52  F---IPK-------QLNNPFSDVMLGGGKNA--AGEIGFAEVNVVGPL-EASSSSQVSFI 98
JCSG3280336 44  Y---LPK-------QLNNPYTDVeVGGGKvA--VGEIk-GEyKLVGPn-DASASSQVSYI 89
JCSG3302417 59  I---IvK-------SaGNPYNQkeseGyKQV--i-EaNgGKcvIqePk-SATAEDQITcI 104
JCSG455754  8   F---IPK-------lVGvgFf-TsgGNGaQe--AGKalgiDVTydGPt-EpSvSGQVQLV 53
JCSG3228743 27  F---IPK-------lVGvgF---FtSGGKGAvdAGKalgVDVTydGPt-EpSvSGQVQLI 72
JCSG2883968 6   F---IPK-------lVGvgFftsggAGAvKA--GeEVG-AKVTydGPt-EpSvSGQVQFI 51
JCSG3295418 15  F---IPK-------ltGvgFftsggeGAKEm--GdKLG-VQVKydGPs-EASvSGQVKYI 60
JCSG1583477 22  ---------------------------GvKA--AGKalgVDTKffvPq-KeDiNAQLQML 51
JCSG1575759 21  ---------------------------GvKA--AGKalgVDTKffvPq-KeDiNAQLQML 50
JCSG1672945 21  ---------------------------GvKA--AGKalgVDTKffvPq-KCDiNAQLQML 50
JCSG2863573 22  ------------------------MGeGvvq--AGKefnlNASqVGPs-STDApQQVKII 54
JCSG3302414 28  v---IvK-------tVNStFwQnVqkGAdaA--iGKqkahtITfqGPaaESAiADQVNMV 75
JCSG1539409 6   L---ViS-------tLNNPFfvTLkNGAEEk--AkELGYkiI--Veds-QnDSSKELSnV 50
JCSG3302528 9   I---IvK-------DtTSfYwQIVLAGARKA--GkDLGvkvpELgAqa-ETDvNGQISIL 55
JCSG213735  6   L---VvS-------tLNNPFfvsLkdGAQKe--AdKLGYnlV--Vlds-QnNpAKELAnV 50
JCSG213734  6   L---VvS-------tLNNPFfvsLkdGAQKe--AdKLGYnlV--Vlds-QnNpAKELAnV 50
JCSG219349  6   L---VvS-------tLNNPFfvsLkdGAQKe--AdKLGYnlV--Vlds-QnNpAKELAnV 50
JCSG213336  6   L---VvS-------tLNNPFfvsLkdGAQKe--AdKLGYnlV--Vlds-QnNpAKELAnV 50
JCSG3302533 15  ------K-------tLSaPYfaAQMeAAKar--GkELGY-EV-LAtda-QGKlQKQISdV 56
JCSG1539394 7   L---VvS-------tLNNPFfvsLkdGAQKe--AdKLGYnlV--Vlds-QnNpAKELAnV 51
JCSG3287094 55  Y---Va-------------LTDAakAeAQaq--GdELfYADAN-------GDiTKQnNdV 89

QUERY       99  NSEV-QAGTNVLVIAANDPDAVCPALQDARKAGTKVVTFD-S--DSAAD--CRDLF--I- 149
JCSG3280336 90  NTlI-QqqqDVIVVAANDPNAVCPSLNQARKAdiKVVTFD-S--DAAkt--CRDaF--I- 140
JCSG3302417 105 NNaI-SqGVDcIAIAANDtDALePALtEAKNqGihVLSLD-S--aTnAN--sRkVF--V- 155
JCSG455754  54  NNfV-NqGyDAIIVSAvSPDGLCPALKrAmQrGVKILTWD-S--DTkpE--CRSyY--I- 104
JCSG3228743 73  NNfV-NqGyNAIVVSAvSPDGLCPALKrAmQrGVKILTWD-S--DTkpE--CRSVY--I- 123
JCSG2883968 52  NNfV-NqGyNALIVSSvSPDGLCPALKrAmErGVlVMTWD-S--DvnpD--CRSyY--I- 102
JCSG3295418 61  NNfI-NqNyDALMVSSTSvDGLsqSLQrAKKkGmtVLTWD-S--Dvnpk--dRSFY--I- 111
JCSG1583477 52  ESfI-aeGVNgIAIApSDPtAViPTIKkAlEmGipVVTLD-T--DSpdS--gRyVY--I- 102
JCSG1575759 51  ESfI-aeGVNgIAIApSDPtAViPTIKkAlEmGipVVTLD-T--DSpdS--gRyVY--I- 101
JCSG1672945 51  ESfI-aeGVNgIAIApSDPtAViPTIKkAlEmGipVVTLD-T--DSpdS--gRyVY--I- 101
JCSG2863573 55  EDlI-arkVDAITIVpNDaNVLePVFKkARdAGivVLTnE-S--pGqpS--A-Nwd--V- 104
JCSG3302414 76  ENaV-NrkVDAILLApSDPDALvPAVKkAwEAripVViID-S--mlSkD--AEkyYqaF- 128
JCSG1539409 51  EDlI-QqkVDVLLInpvDsDAVvtAIKEANSkNipVITIDrS--aNGGDvvCH-Ia--s- 103
JCSG3302528 56  ENaV-aGkpaAIVISpTEfkALgkpVDEAaKS-VpIIgID-SgaDSkAf--ksfLt--t- 107
JCSG213735  51  QDlT-vrGTKILLInpTDsDAVgnAVKmANQANipVITLD-r--QAT-----Kgev--V- 98
JCSG213734  51  QDlT-vrGTKILLInpTDsDAVgnAVKmANQANipVITLD-r--QAT-----Kgev--V- 98
JCSG219349  51  QDlT-vrGTKILLInpTDsDAVgnAVKmANQANipVITLD-r--QAT-----Kgev--V- 98
JCSG213336  51  QDlT-vrGTKILLInpTDsDAVdnAVKmANQANipVITLD-r--QAT-----Kgev--V- 98
JCSG3302533 57  EDlV-trGVKLLIInpaDsEGLvnAVNNAsanGVKVVVID-S----TlN--pRanF--V- 105
JCSG1539394 52  QDlT-vrGVKILLInpvDsDAVgnAVKmANQANipVITLD-r--QAT-----Kgev--V- 99
JCSG3287094 90  QDlI-trGiNVLVInpvDPkGVtPSLaaAEaAGiKVVTvD-r--pveSg--AaS-F--V- 139

QUERY       150 -NQVES------KQVAITML--DMVS--DQI-G-GS--G-KVAILSAT-ANAANQNAW-- 190
JCSG3280336 141 -NQAtT------QgIGeSLV--kMAK--Ela-G-GS--G-EIAVLSAT-pNATNQNSW-- 181
JCSG3302417 156 -NQAgT------tQIAqALM--DaIl--Dis-G-GS--G-dwAVLSAA-STATNQNAW-- 196
JCSG455754  105 -NQgtp------KQLGsmLV--EMAA--hQV-dkeK--A-KVAFFySS-pTVTDQNqW-- 146
JCSG3228743 124 -NQgtp------NQLGsmLV--DMAA--NQVkk-eQ--A-KVAFFySS-pTVTDQNqW-- 165
JCSG2883968 103 -NQgtp------EQLGglLV--DMAA--EgVkk-eK--A-KVAFFySS-pTVTDQNAW-- 144
JCSG3295418 112 -SQgtp------dQLAnlLI--EMTS--kQI-G-dK--G-KVAFFySS-pTVTDQNqW-- 152
JCSG1583477 103 -G-TDN------yQAGyTag--lIMK--ElL-G-GK--G-KVVIgTGS-lTAmNSlqr-- 142
JCSG1575759 102 -G-TDN------yQAGyTag--lIMK--ElL-G-GK--G-KVVIgTGS-lTAmNSlqr-- 141
JCSG1672945 102 -G-TDN------yQAGyTag--lIMK--ElL-G-GK--G-KVVIgTGS-lTAmNSlqr-- 141
JCSG2863573 105 -EiIDN------EKfAaeyV--EhMA--kRM-G-GK--G-gyVIyvGS-lTVpQHNlWad 147
JCSG3302414 129 -laTDN------KaAGelaa--kaMi--QKV-G-tE--G-KIAVMSyV-AGAGSEiGr-- 169
JCSG1539409 104 -DNVKG------gEMA---a--EFIA--kaL-k-GK--G-NVVeLEGi-pGASaaRdr-- 141
JCSG3302528 108 -DNTQG------gRIAadgL--aaAi--kaM-t-GKeeG-dVVIITnT-pGAGSlEqr-- 150
JCSG213735  99  -SHIaS------dNVlggkIagDyIA--kKa-G-eG--A-KVieLQGT-AaTSaaRer-- 141
JCSG213734  99  -SHIaS------dNVlggkIagDyIA--kKa-G-eG--A-KVieLQGi-ARTSaaRer-- 141
JCSG219349  99  -SHIaS------dNVlggkIagDyIA--kKa-G-eG--A-KVieLQGi-AGTSaaRer-- 141
JCSG213336  99  -SHIaS------dNVlggkIagDyIA--kKa-G-eG--A-KVieLQGi-AGTSaaRer-- 141
JCSG3302533 106 -TQVQS------SNsingaLvghwVi--EEV-G-NK--SlKIALLSGekGNpVGQErr-- 150
JCSG1539394 100 -SHIaS------dNVlggkIagDyIA--kKa-G-eG--A-KVieLQGi-AGTSaaRer-- 142
JCSG3287094 140 -GR-DN------KaMGelVg--kaAv--DtL-GpdG--G-KIieIQGd-AGGAvaRdr-- 180

QUERY       191 --IKFMEDEIASNDKYKG---IEIVAKVYGDDDDTKSFQEAQGLLQAHPDLNAIV---SP 242
JCSG3280336 182 --IEvMKtELAKpENaK----LKLVkiAYGNDDDqKSFtEAQGLLQSYPNLKVIV---SP 232
JCSG3302417 197 --IdgMK-tVmQDSKYSk---LNLIGvyYGDDEyqaScDQTEAILaAdPNIKVIc---AP 247
JCSG455754  147 --VK--EaKakiSQEHpG---wEIVTtqFGyNDaTKSLQtAEGIIKAYPDLDAII---AP 196
JCSG3228743 166 --VNeaKkKI--QQEHpG---wEIVTtqFGyNDaTKSLQtAEGILKAYaDLDAII---AP 215
JCSG2883968 145 --aEaaKaKIAK--EHpG---wEIVTtqYGyNDaqKSLQtAESILQTYPDLDAII---AP 194
JCSG3295418 153 --VtkaKEiI--KEKYpN---wEIVTtqYGENNaqKSLSvGENILKTYPDINAVI---cP 202
JCSG1583477 143 --IQgFKDaIkDSE-------IEIVdiLndEEDgARAvSlAEAaLNAHPDLDAFf---Gv 190
JCSG1575759 142 --IQgFKDaIkDSE-------IEIVdiLndEEDgARAvSlAEAaLNAHPDLDAFf---Gv 189
JCSG1672945 142 --IQgFKDaIkDSE-------IEIVdiLndcEDgARAvSlAEAaLNAHPDLDAFf---Gv 189
JCSG2863573 148 llVKYQKEHypDmhEvtr---rmpVAEsvdDSrrT-----TldLMKTYPDLKAVV---Sf 196
JCSG3302414 170 --VggFtDyIkANSK------LQIVGpyYSQSQmAtALNQTtdVLaANaDLKGIfganEP 221
JCSG1539409 142 --gKgFDEaIA---KYpd---IKIVAKqaADfDrSKGLSvmENILQAQPkIDAVf---Aq 190
JCSG3302528 151 --rtgFlDQVkT--KYpG---LKVVAdkYADgQaTtGLNimtdLItANPkIvGVf---As 200
JCSG213735  142 --gEgFQQaVAAHk-------FNVLASqpADfDriKGLNvmQNLLtAHPDVQAVf---Aq 189
JCSG213734  142 --gEgFQQaVAAHk-------FNVLASqpADfDriKGLNvmQNLLtAHPDVQAVf---Aq 189
JCSG219349  142 --gEgFQQaVAAHk-------FNVLASqpADfDriKGLNvmQNLLtAHPDVQAVf---Aq 189
JCSG213336  142 --gEgFQQaVAAHk-------FNVLASqpADfDriKGLNvmQNLLtAHPDVQAVf---Aq 189
JCSG3302533 151 --LgvLSgiIeAQlRkfGkadLtVVGQgWGhwNDegGLKamEdLLvANkDINmVL---Ge 205
JCSG1539394 143 --gEgFQQaVAAHk-------FNVLASqpADfDriKGLNvmQNLLtAHPDVQAVf---Aq 190
JCSG3287094 181 --rdgFQaaVSGR---pN---ItIVegpYcDyirSKAvtamQdLLQAHPDLKGVy---Aq 229

QUERY       243 ---T-TVGIAATARYLSTSDYKGKVFLTGL-GLPNEMRSFVKDG---TVKEFALWDPAQL 294
JCSG3280336 233 ---T-TVGIAAASRYVSASSYKGKVaITGL-GLPNQMRQYVKDG---TVKKFALWNPADI 284
JCSG3302417 248 ---T-TVGImAAAKvLQdKglSGKVkLTGL-GLPSEMaDYIgDddqhScpyMfLWNPiQL 302
JCSG455754  197 ---d-AnALpAAAQ-aAeNlkRNNLaIVGF-StPNvMRpYVQrG---TVKEFGLWDvVQq 247
JCSG3228743 216 ---d-AnALpAAAQ-aAeNlkRANVaIVGF-StPNvMRpYVErG---TVKEFGLWDvVNq 266
JCSG2883968 195 ---d-AnALpAAAQaaENlkraegVtIVGF-StPNvMRpYIErG---TIQRFGLWDvTQq 246
JCSG3295418 203 ---d-ATALpAmAQaaENlkmdkKVvVTGF-StPNvMRDYVKrG---TVQQFGLWDvkQq 254
JCSG1583477 191 ---y-AyNgpAqAlvVKNAgkvGKVkIVcF-dttpDIlQYVKEG---VIQatmgqrPyMM 242
JCSG1575759 190 ---y-AyNgpAqAlvVKNAgkvGKVkIVcF-dttpDIlQYVKEG---VIQatmgqrPyMM 241
JCSG1672945 190 ---y-AyNgpAqAlvVKNAgkvGKVkIVcF-dttpDIlQYVKEG---VIQatmgqrPyMM 241
JCSG2863573 197 ---g-SnGpiGAGRaVKeKraKNKVaVyGM-mIPSQaaSLIKSG---dItEgitYDPAta 248
JCSG3302414 222 ---T-AIGM---GRaIKqAgkaGKLvaiGF-dgnQDLQEFVKDG---TLEatVVqgsyQM 270
JCSG1539409 191 ---N-demalGAiKaIEAANrQG-IIVVGF-dgtEDalKaIKEG---kMaatiaqQPAlM 241
JCSG3302528 201 ---N-lImaqGVGQaIAeNklSdKVkViGF-dsdDKtlGFLKSG---AIagLVVqDPyRM 252
JCSG213735  190 ---N-demalGAlRaLQTAg-KSdVMVVGF-dgtpDgEKaVNDG---kLaatiaqlPdQI 240
JCSG213734  190 ---N-demalGAlRaLQTAg-KSdVMVVGF-dgtpDgEKaVNDG---kLaatiaqlPdQI 240
JCSG219349  190 ---N-demalGAlRaLQTAg-KSdVMVVGF-dgtpDgEKaVNDG---kLaatiaqlPdQI 240
JCSG213336  190 ---N-demalGAlRaLQTAg-KSdVMVVGF-dgtpDgEKaVNDG---kLaatiaqlPdQI 240
JCSG3302533 206 ---N-dsmVlGArRaIESAgrtGiLLVAAa-daqKEalALIKQG---kygvtGLnDPAlV 257
JCSG1539394 191 ---N-demalGAlRaLQTAg-KSdVMVVGF-dgtpDgEKaVNDG---kLaatiaqlPdQI 241
JCSG3287094 230 ---N-d-dMAlgAmqVlAENnRtdVkVfGVdGLmEaVRAIAdgd---qyvatALnDPdae 281

QUERY       295 GYVAAY-AGAALDSGAIKGEVGEKFTAGNLGERTIGENK------------T-------- 333
JCSG3280336 285 GYLAAY-AGAALkSGqItGaqGEKFkAGKLGEyTVGaag------------e-------- 323
JCSG3302417 303 GnLAAY-ASiSLvNGTItGaAdQSFT---VpDKTLGDNg------------Sykitaaad 346
JCSG455754  248 GkISVY-VAnALlKN-MpmNVGDSLdipGIGKvTVSpNSeqgyhyeakgngi-------- 297
JCSG3228743 267 GkISVYvANemLkKGdL--NVGDKIdipNIGvveVSpNR------------Vqgydyeak 312
JCSG2883968 247 GkISVFvAdhVLkNGpMK--VGEKLeipGVGtveVSaNK------------Vqgydyead 292
JCSG3295418 255 GaLATY-VAneIvvkGkKlKVGDSFeVkGIGKvkVepNSiqgydyeaegngi-------- 305
JCSG1583477 243 GYLS-------------------------------------------------------- 246
JCSG1575759 242 GYLS-------------------------------------------------------- 245
JCSG1672945 242 GYLS-------------------------------------------------------- 245
JCSG2863573 249 GYAlAa-VASTLlNGk---tIepgFelkELGKaeVdSDK------------h-------- 284
JCSG3302414 271 G----------------------------------------------------------- 271
JCSG1539409 242 GsL-----GVeMaDkyLKGEkipNFipAEL------------------------------ 266
JCSG3302528 253 GYdGik-TAlAVSKG--------------------------------------------- 266
JCSG213735  241 G----------------------------------------------------------- 241
JCSG213734  241 G----------------------------------------------------------- 241
JCSG219349  241 G----------------------------------------------------------- 241
JCSG213336  241 G----------------------------------------------------------- 241
JCSG3302533 258 ArTAid-lGVkVvKGeVK------------------------------------------ 274
JCSG1539394 242 G----a-kGVeVaDkVLKGE---------------------------------------- 256
JCSG3287094 282 GrLAiq-TAAkVarG--------------------------------------------- 295

QUERY       334 ----VVVGDPVRF-NADNIDKYDF 352
JCSG3280336 324 ----IVLGpPTEF-TAaNIDQFNF 342
JCSG3302417 347 ggteIILGaPfKF-EpSNIaEW-- 367
JCSG455754  298 ----VLLpErViF-NkDNIDKYDF 316
JCSG3228743 313 gngiVLLpQrViF-TkENISKYDF 335
JCSG2883968 293 gngiILLpErTvF-TkENIgNFDF 315
JCSG3295418 306 ----IVLpErVvF-TkDNIDKYNF 324
JCSG1583477 245 ------------------------ 246
JCSG1575759 244 ------------------------ 245
JCSG1672945 244 ------------------------ 245
JCSG2863573 285 ----IIrfhkVlLvNkDNID---- 300
JCSG3302414 270 ------------------------ 271
JCSG1539409 265 ------------------------ 266
JCSG3302528 265 ------------------------ 266
JCSG213735  240 ------------------------ 241
JCSG213734  240 ------------------------ 241
JCSG219349  240 ------------------------ 241
JCSG213336  240 ------------------------ 241
JCSG3302533 273 ------------------------ 274
JCSG1539394 255 ------------------------ 256
JCSG3287094 294 ------------------------ 295

Note
Homologous search is done using BLAST from NCBI BLAST against database pdbnr with expect (E-value cut-off) at 0.001. The structure of a PDB sequence may be fully or partly solved. The non-redundant database pdbnr consists of unique PDB sequences from the representative PDB chains. Each representative chain has the best structural coverage in the set of the same sequences. You could click a sequence ID to see all of PDB chains associated with the sequence ID plus sequence alignments and structural coverages.



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