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   ZP_02040096.1;SP17422C
Protein Sequence Comparative Analysis   (PSCA)
 
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ZP_02040096.1    PDB Fold Similairty





PDB sequences with significant alignments
Sequence information                                           Score	E-value
JCSG3259747|pdb|4IB2_A|Putative Lipoprotein                       492	e-139
JCSG3264505|pdb|4K3F_A|Probable TonB-dependent receptor           223	8e-59
JCSG3296885|pdb|4QHQ_A|Lipoprotein                                197	6e-51
JCSG3246709|pdb|4EF1_A|Pheromone cOB1/lipoprotein, YaeC family    193	9e-50
JCSG469599|pdb|1XS5_A|Membrane lipoprotein TpN32                  192	3e-49
JCSG3256142|pdb|4GOT_A|Methionine-binding lipoprotein metQ        187	7e-48
JCSG3304961|pdb|4YAH_X|D-methionine-binding lipoprotein MetQ      182	3e-46
JCSG3231355|pdb|3UP9_A|Putative uncharacterized protein           172	2e-43
JCSG3212633|pdb|3TQW_A|Methionine-binding protein                 169	2e-42
JCSG3086057|pdb|3IR1_B|Outer membrane lipoprotein GNA1946         164	8e-41
JCSG3086031|pdb|3GXA_C|Outer membrane lipoprotein GNA1946         164	8e-41
JCSG3291417|pdb|4NTL_A|Lipoprotein, YaeC family                   159	2e-39
JCSG3186197|pdb|3K2D_A|ABC-type metal ion transport system,...    158	4e-39
JCSG3294870|pdb|4OTE_B|Lipoprotein                                155	2e-38
JCSG3296869|pdb|4Q5T_A|Lipoprotein                                152	2e-37
JCSG320287|pdb|1P99_A|Hypothetical protein PG110                  148	4e-36
PDB sequence alignments
QUERY       18  LTGCQSNSKAEEKGSSEDAK-TIKVAASATPHAEILEQAKSI-LK-KE-GYQLEVTVFDD 73
JCSG3259747 2   ----------EEKGSSEDAK-TIKVAASATPHAEILEQAKSI-LK-KE-GYQLEVTVFDD 47
JCSG3264505 2   ------------------AE-SLtVAATpVPHAEILNvVKpL-La-KE-GvDLKIkeFtD 39
JCSG3296885 2   ----------------------IKVGTvAgPdSEVwQvVQKV-aKeKE-GlNVKVieFND 37
JCSG3246709 2   -----------------DdS-VLKVGASpVPHAEILEHVKpL-LE-KE-GvKLEVTTYtD 40
JCSG469599  3   -------------------E-TVgVGVlSePHARLLEiAKEe-VK-KQ-hiELRIVeFtN 39
JCSG3256142 6   -------------------K-eIvVAATkTPHAEILKEAEpL-LK-EK-GYtLKVkVLSD 42
JCSG3304961 20  LVGCgQDEK--------DpN-hIKVGViVgaEqQVaEvAQKV-aKdKy-GlDVELVTFND 68
JCSG3231355 1   -------------GSSSDVv-TLtVGATpSPHAKILtyiNDn-La-aDaGiKLDIVeYtD 44
JCSG3212633 5   ----------------------VRVGTiAgPETQLMEvAKQVaLN-Ry-GlHVNIiTFSD 40
JCSG3086057 16  ----------------------------------VkEQiQpe-LE-KK-GYtVKLVeFtD 38
JCSG3086031 38  ----------------------------------VkEQiQpe-LE-KK-GYtVKLVeFtD 60
JCSG3291417 1   -------------GDQKEdK-eItVAVQlesskDILEiAKKe-aE-KK-GYKINImevSD 43
JCSG3186197 4   -----------------DTS-kVKVGVmAgaEAQVaEvAaKV-aKeKy-GlDVELVTFtD 43
JCSG3294870 2   ----------------KDdK-kIvVGATlVPgGELLEElKpL-IK-EK-GYtLEVknFDD 41
JCSG3296869 4   --------------NDKNTl-TVgVmTmTdsdkErwDKiEEL-LK-KE-NiKLKfkeFtD 45
JCSG320287  34  -------------GSNNDkKvTIgVASNdT---KawEKVKEL-aK-KD-diDVEIkhFSD 74

QUERY       74  YVQPNEVVESGEFDANYFQHVPYLE-SFNE-EKGTHLVDAGDIHYEPFGIYPGTKK---- 127
JCSG3259747 48  YVQPNEVVESGEFDANYFQHVPYLE-SFNE-EKGTHLVDAGDIHYEPFGIYPGTKK---- 101
JCSG3264505 40  YVQPNvqVSEkRLDANFFQHqPYLD-EFNK-aKGTdLVaVtgVHiEPLGaYsSkyK---- 93
JCSG3296885 38  YVQPNaALDSGDLDANsFQHqPYLD-SqvK-QRGykIVSAGltYiSPIGVYskkfK---- 91
JCSG3246709 41  YVlPNKALESGDIDANYFQHVPFFN-EavK-ENdydFVNAGaIHlEPvGLYskkyK---- 94
JCSG469599  40  YValNEAVmrGDIlmNFFQHVPHMQ-QFNQ-EhNgdLVSVGNVHvEPLALYsrTyR---- 93
JCSG3256142 43  YkMyNKALaDkEvDANYFQHIPYLEqEMKE-NtdykLVNAGaVHlEPFGIYskTyK---- 97
JCSG3304961 69  YVlPNEALSKGDIDANaFQHkPYLD-QqlK-DRGykLVaVGNtfvyPIAgYskkiK---- 122
JCSG3231355 45  YVQPNtALNDGDLDANFYQtVPYLE-NaEK-QfGyNFeaGegIHlEPLGVFsNkhK---- 98
JCSG3212633 41  YntPNEALaDGSvDANmFQHLPYLK-AqiE-mRGykIVSiGktfvyPMGLYskkit---- 94
JCSG3086057 39  YVRPNlALaEGELDiNvFQHkPYLD-DFKK-EhNldITEVfQVptaPLGLYPGklK---- 92
JCSG3086031 61  YVRPNlALaEGELDiNvFQHkPYLD-DFKK-EhNldITEVfQVptaPLGLYPGklK---- 114
JCSG3291417 44  nVayNDAVQhdEaDANFaQHqPFME-mFNK-EKkAdLVaVqpIYYfagGFYskeyQ---- 97
JCSG3186197 44  YVtPNaALDDGSIDmNaFQHkPYLD-rqvE-DRdykLTiAGNtfvyPIAgYskqvK---- 97
JCSG3294870 42  YIlPNEALNNGEIDANlFQHePYLK-EavK-aKGykIMaGkkLYvcPaiLYsykiK---- 95
JCSG3296869 46  YsQPNKALKNGEIDiNsFQHynFLN-NWNK-ENkgdLVtVAEtYiSPINLFsGTENgkak 103
JCSG320287  75  YnlPNKALNDGDIDmNaFQHfaFLD-QYKKaHKGTkIsalSttvlaPLGIYsdkiK---- 129

QUERY       128 --SLDEISEGDKIAVPNDTTNEARALLLLQDNGIITLKDGA-G-L---NATVNDIEENPY 180
JCSG3259747 102 --SLDEISEGDKIAVPNDTTNEARALLLLQDNGIITLKDGA-G-L---NATVNDIEENPY 154
JCSG3264505 94  --KLDELpSGatVVIPNDATNgGRALLLLDkaGVIkLKDNk-S-I---TATpKDIvDNPk 146
JCSG3296885 92  --SLkDLpQGaKLAVPNDpSNEnRALLLLQtQGVIkLKaGA-G-tggnNATVlDIaENPk 147
JCSG3246709 95  --SLQEIpDGStIyVsSSVSDwpRVLtILEDaGLITLKEGV-drt---TATfDDIDKNtk 148
JCSG469599  94  --hVSDFpaGavIAIPNDSSNEARALrLLEaaGFIrMRaGS-G-L---fATVEDVQQNvr 146
JCSG3256142 98  --SLkDLpDGatIiLtNNVAEQGRmLaMLENaGLITLdSkVet-V---DATLKDIKKNPk 151
JCSG3304961 123 --SLDELQDGSQVAVPNDpTNlGRSLLLLQkvGLIkLKDGV-G-L---lpTVlDVvENPk 175
JCSG3231355 99  --SLDELpDGgtIGIiSDTANQSRALeLLatQGLVSIpEGd-G-----DVNINtVtKlk- 149
JCSG3212633 95  --ALtQLKtGaKIAVPSDpSNEARALLLLEkaqLIqLKthV-t-I---NATpmDIaSNPk 147
JCSG3086057 93  --SLEEVKDGStVSAPNDpSNfARVLVMLDElGwIkLKDGi-NpL---TASkaDIaENlk 146
JCSG3086031 115 --SLEEVKDGStVSAPNDpSNfARVLVMLDElGwIkLKDGi-NpL---TASkaDIaENlk 168
JCSG3291417 98  --DakDLpENaKVGIPSDpTNEGRALaILNaNGVIkLKEGV-G-F---NGTVaDVvENPk 150
JCSG3186197 98  --SVaaLADGvRIAVPNDpTNlGRSLLLLEQQGLIkLRpeV-G-L---lATVRDIvENPk 150
JCSG3294870 96  --SVDEFKKGDtIAIsNNpSScSKnLryLESiGLLTLpkGd-G-L----VSpKDIiENPk 147
JCSG3296869 104 ysSakEIpNGgQIAIPNDATNESRALyVLQDaGLIkLNvSG-d-e---lATVKNIKSNPk 158
JCSG320287  130 --DVkKVKDGaKVVIPNDVSNQARALkLLEaaGLIkLKkdf-G-L---aGTVKDItSNPk 182

QUERY       181 NVEI--VELEAAQVARV--TGE--TAYVVLNGNYALEAGYSVAKDALAYEKSDSEAAKTY 234
JCSG3259747 155 NVEI--VELEAAQVARV--TGE--TAYVVLNGNYALEAGYSVAKDALAYEKSDSEAAKTY 208
JCSG3264505 147 NIKI--rELEAAtLpRV--ltQ--VdmALINtNYALEAklNpTKDALAiEgSDS----pY 196
JCSG3296885 148 KLKI--sELDAAQLpRV--lSD--VdaAVINtNYALaANlQpTKDAIAlESltS----pY 197
JCSG3246709 149 KLKFn-hEsDpAiMTtLydNeE--gAaVLINSNFAVDqGlNpkKDAIAlEKESS----pY 201
JCSG469599  147 NVvL--qEVESAlLpRV--fdQ--VdgAVINGNYAImAGlSArRDGLAvEpD----ASAY 196
JCSG3256142 152 NLEFkkVapElTakAye--NkE--gdaVfINvNYAIQnklNpkKDAIevESTkN---NpY 204
JCSG3304961 176 NLKI--VELEApQLpRslddAQ--iAlAVINtTYAsQiGlTpAKDGIfvEdKES----pY 227
JCSG3231355 150 NfDF--rEVEGpQLVRs--ldD--fdYAVINGNFAqEGGkTISgDALVvESpvDNpA--- 200
JCSG3212633 148 KLKI--VELDAAQLSRs--lGD--VdlAAINtNYAIpAGlSpSRDALltEgpNS----pY 197
JCSG3086057 147 NIKI--VELEAAQLpRs--rAD--VdFAVVNGNYAISSGmKLT-EALfqEpSfA-----Y 194
JCSG3086031 169 NIKI--VELEAAQLpRs--rAD--VdFAVVNGNYAISSGmKLT-EALfqEpSfA-----Y 216
JCSG3291417 151 NItF--eSIDllNLAKA--ydEkdiAmVfcypaYlepAGlT-TKDAIllE--DKEASKhY 203
JCSG3186197 151 NItI--MELDAAQLpRs--ldD--VAlsIINtTYAsSiNlTpeKDGVfvEdKES----pY 200
JCSG3294870 148 GIQF--kELDiAQIpss--lpD--VTaAfIDtTYAVpAGlDAkKNGIytapiNDE----Y 197
JCSG3296869 159 NLDI--kEVDASQTARn--lAS--VdaAVVNNSYAVpA--KIdfkTslYKEKvNEGSKqW 210
JCSG320287  183 HLKI--TaVDAqQTARA--lSD--VdiAVINNGvAtKAGkDpkNDpIflEKSNSDAVKpY 236

QUERY       235 VNIIAVKEGNEKEEK---IQALVKALKSDEIKEYIEKTY-DGAVIPFE 278
JCSG3259747 209 VNIIAVKEGNEKEEK---IQALVKALKSDEIKEYIEKTY-DGAVIPFE 252
JCSG3264505 197 VNILVARpdNKdSDa---MQkLAKALhSaEIKQFIQEkY-kGAVVP-- 238
JCSG3296885 198 ANLIAVRakDKdQpw---VKkLVKAyQSpEVKEFIKKqF-kGSMV--- 238
JCSG3246709 202 ANIIAVRKeDENNEN---VKkLVKVLRSkEVQDWItKkW-NGAIVP-- 243
JCSG469599  197 ANVLVVKRGNEaDaR---VQAVLRALcGgRVRtYLKErY-kGGeV--- 237
JCSG3256142 205 ANIIAVRKGEEdSaK---IKALMEVLhSkKIKDFIEKkY-DGAVLP-- 246
JCSG3304961 228 VNLIVTREdNKdaEN---VKkFVQAyQSDEVyEaaNKVF-NGGAV--- 268
JCSG3231355 201 VNVLVwKgdSKKvDa---IakLeKlLhSDEVKQYIEKTWsDGSVIP-- 243
JCSG3212633 198 ANVVAVREdDKNDpR---LKqLVSALhSpaVlSaaKKiF-gdGAIP-- 239
JCSG3086057 195 VNwsAVKtADKdSQw---LKdVTEAyNSDaFKaYaHKrF-EGyksP-- 236
JCSG3086031 217 VNwsAVKtADKdSQw---LKdVTEAyNSDaFKaYaHKrF-EGyksP-- 258
JCSG3291417 204 AlqVVTRKGEKdSEK---IKVLkEAMtTkEVaEYIKKNs-kGAnIP-- 245
JCSG3186197 201 VNLIVARQdNvQNEN---VQnFVKAyQTEEV----------------- 228
JCSG3294870 198 ANLLAfRteDKdSEK---IKVLqdVLtSDKaRSlIEEkY-kGiVIP-- 239
JCSG3296869 211 INIIAAQKNwKKSKKaaaIKkLIKAyhTDaVKKvIKKTa-kGVdeP-- 255
JCSG320287  237 INIVAVNDkDldNKt---yakIVElyhSkEaQKaLQE----------- 270

Note
Homologous search is done using BLAST from NCBI BLAST against database pdbnr with expect (E-value cut-off) at 0.001. The structure of a PDB sequence may be fully or partly solved. The non-redundant database pdbnr consists of unique PDB sequences from the representative PDB chains. Each representative chain has the best structural coverage in the set of the same sequences. You could click a sequence ID to see all of PDB chains associated with the sequence ID plus sequence alignments and structural coverages.



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