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   YP_001635819.1;MI10991B
Protein Sequence Comparative Analysis   (PSCA)
 
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YP_001635819.1    PDB Fold Similairty





PDB sequences with significant alignments
Sequence information                                           Score	E-value
JCSG3194862|pdb|3QBM_A|TetR transcriptional regulator             385	e-107
JCSG2883817|pdb|3EUP_A|Transcriptional regulator, TetR family     125	1e-29
JCSG452456|pdb|4PXI_B|CprB                                        67	6e-12
JCSG76603|pdb|1SGM_B|Putative HTH-type transcriptional re...      66	2e-11
JCSG708183|pdb|2HYJ_A|Putative tetR-family transcriptional...     64	5e-11
JCSG3249225|pdb|3VPR_A|Transcriptional regulator, TetR family     60	9e-10
JCSG3165599|pdb|2XDN_A|HTH-TYPE TRANSCRIPTIONAL REGULATOR TTGR    56	1e-08
JCSG3264161|pdb|4JNN_A|Transcriptional regulator                  55	3e-08
JCSG3280490|pdb|4KWA_A|Transcriptional regulator                  55	3e-08
JCSG3259241|pdb|4ICH_A|Transcriptional regulator                  55	3e-08
JCSG3291191|pdb|4NEL_A|Transcriptional regulator                  55	3e-08
JCSG1563014|pdb|2UXH_A|HTH-TYPE TRANSCRIPTIONAL REGULATOR TTGR    54	5e-08
JCSG2877574|pdb|3DPJ_A|Transcription regulator, TetR family       54	7e-08
JCSG3157610|pdb|3KNW_A|Putative transcriptional regulator (...    52	2e-07
JCSG2874362|pdb|3DCF_A|transcriptional regulator of the Tet...    52	2e-07
JCSG410989|pdb|2FD5_A|transcriptional regulator                   52	2e-07
JCSG1489692|pdb|2I10_B|Putative TetR transcriptional regulator    52	3e-07
JCSG3302546|pdb|4UDS_A|MBDR REGULATOR                             52	3e-07
JCSG3286340|pdb|4L62_A|Transcriptional regulator                  52	3e-07
JCSG3246034|pdb|3RD3_A|Probable transcriptional regulator         52	3e-07
...more
PDB sequence alignments
QUERY       1   MRKGQETR----ERVVAQAAA-LFNVSGYAGTAISDIMAATGLEKGGIYRHF-ESK---- 50
JCSG3194862 2   MRKGQETR----ERVVAQAAA-LFNVSGYAGTAISDIMAATGLEKGGIYRHF-ESK---- 51
JCSG2883817 6   LsKSDRTR----QfIIeSTAp-VFNVKGlAGTSLTDLteATNLtKGSIYgNF-ENK---- 55
JCSG452456  6   --RAEQTR----atIIGaAAd-LFDrrGYeSTTLSEIVAhAGVtKGALYfHF-aAK---- 53
JCSG76603   6   -----DSR----EKILhtASr-LsQLQGYhATGLNQIVkeSGapKGSLYHfFpNGK---- 51
JCSG708183  9   --EAQaTR----gRILGRAAe-IaSeEGldGiTIGrLaeeleMSKSGVHKHF-gTK---- 56
JCSG3249225 4   ------TR----DRILeEAAk-LFTeKGYeATSVQDLaqAlGLSKAALYHHF-gSK---- 47
JCSG3165599 8   --EAQETR----aQIIeaAer-aFykrGvArTTLADIaelAGVtRGAIYwHF-NNK---- 55
JCSG3264161 3   -----EAR----RRILetAwr-LIarrGYhNVrIhDIaSelGtSNAtIHyHF-pSK---- 47
JCSG3280490 4   -----EAR----RRILetAwr-LIarrGYhNVrIhDIaSelGtSNAtIHyHF-pSK---- 48
JCSG3259241 120 -----EAR----RRILetAwr-LIarrGYhNVrIhDIaSelGtSNAtIHyHF-pSK---- 164
JCSG3291191 2   -----EAR----RRILetAwr-LIarrGYhNVrIhDIaSelGtSNAtIHyHF-pSK---- 46
JCSG1563014 8   --EAQETR----aQIIeaAer-aFykrGvArTTLADIaelAGVtRGAIYwHF-NNK---- 55
JCSG2877574 8   -----QTR----DQIVAaAde-LFyrQGFAqTSFvDIsAAVGISRGNFYyHF-KTK---- 52
JCSG3157610 9   VKKSEakR----QHILdSGfh-LvlrKGFVGVGLQEILkTSGVpKGSFYHYF-ESK---- 58
JCSG2874362 27  -RtGNDrR----tQIIkvATe-LFReKGYyATSLDDIadriGFtKpAIYyYF-KSK---- 75
JCSG410989  4   --KktQTR----aRILGaATq-aLlerGaVepSVGEVMGAAGLtvGGFYaHF-QSK---- 51
JCSG1489692 20  ------------------Ame-LFwrQGYeGTSITDLtkAlGINppSLYaaF-gSK---- 55
JCSG3302546 4   LNKkEEqRkastENILGcAld-LFvkNGYrATTIDmIaArAGLtKGAIYfYF-KTK---- 57
JCSG3286340 4   -----DTR----QHLLdtGyr-IMaVKGFSGVGLNEILqSAGVpKGSFYHYF-KSK---- 48
JCSG3246034 10  -----DTR----QHLLdtGyr-IMaVKGFSGVGLNEILqSAGVpKGSFYHYF-KSK---- 54

QUERY       51  EQ-------LA---LA---AF-D-----YAAEKV-----R---E---RFA-VGL---A-- 74
JCSG3194862 52  EQ-------LA---LA---AF-D-----YAAEKV-----R---E---RFA-VGL---A-- 75
JCSG2883817 56  Ea-------VA---IA---AF-D-----YnwghV-----K---S---vLT-AkV---q-- 79
JCSG452456  54  ED-------LA---hA---iL-E-----iqSRts-----R-------RLA-kdL---d-- 76
JCSG76603   52  EE-------LA---Ie---Av-t-----YTGKiV-----E---H---lIq-qSM---d-- 75
JCSG708183  57  Et-------Lq---IS---TL-D-----kAfvdf-----w---H---RvV-epa---l-- 80
JCSG3249225 48  EEilyeislLA---Lk---GL-v-----aAGEK----------------A-LeV---A-- 73
JCSG3165599 56  aE-------LV---qA---lL-D-----slAE-------t---H---dhl-Ara---S-- 77
JCSG3264161 48  KD-------Il---Le---AL-r-----rnVKlA-----f---D---RqV-AeL------ 70
JCSG3280490 49  KD-------Il---Le---AL-r-----rnVKlA-----f---D---RqV-AeL------ 71
JCSG3259241 165 KD-------Il---Le---AL-r-----rnVKlA-----f---D---RqV-AeL------ 187
JCSG3291191 47  KD-------Il---Le---AL-r-----rnVKlA-----f---D---RqV-AeL------ 69
JCSG1563014 56  aE-------LV---qA---lL-D------SlHET-----H---D---HLA--ra---S-- 77
JCSG2877574 53  DE-------I-------------------lAEvI-----Rlrla---RtA-qmL---A-- 72
JCSG3157610 59  Ea-------FG---ce---lL-k-----HyiSdy-----Q---i---RLn-qlw---T-- 82
JCSG2874362 76  ED-------Vl---FA---iv-N-----siVDEA-----l---E---RFh-Aia---A-- 99
JCSG410989  52  Da-------Lm---Le---AF-E-----qllgKr-----R---EllgELd-pGL---S-- 78
JCSG1489692 56  RD-------Lf---ek---TL-Dr----YmCERTlq---l---E---Eam-Vrp---T-- 82
JCSG3302546 58  Da-------Im---Lm---lL-E-----eAeKyI-----v---D---pId-eyM---A-- 81
JCSG3286340 49  EQ-------FG---qA---lL-EdyfrvYlADmd-----Q---R---fsA-pGL------ 76
JCSG3246034 55  EQ-------FG---qA---lL-EdyfrvYlADmd-----Q---R---fsA-pGL------ 82

QUERY       75  -GHK--HT----V--DT----I----I-AFLDVF-RSY---AE----RPPLVG-GCPILN 107
JCSG3194862 76  -GHK--HT----V--DT----I----I-AFLDVF-RSY---AE----RPPLVG-GCPILN 108
JCSG2883817 80  -AcN--ty----k--Em----L----L-VYsSMY-NDa---dg----slfpVG-GCPLLN 112
JCSG452456  77  -GRg--YS--------S----L----e-ALMrLt-fGm---AR-------Lcv-qgPVLR 104
JCSG76603   76  -esS--dp----V--EA----I----q-lFIkkt-aSq---fD----NtesIk-GiPVgl 108
JCSG708183  81  -AEp--pg----L--rr----L----r-Avcans-vGY---lE----EPlLpG-GClLta 113
JCSG3249225 74  -dpK-----------EA----L----r-rFMEAh-arY---fE----E------NyPFFv 98
JCSG3165599 78  -esE--de----V--Dp----Lgcmrk-lLLQVF-NEl---Vl----dartrr-ineILH 114
JCSG3264161 71  ------HT----Ia-DA----r----e-rLVrLv-Elq---lp----tPgLLr-dewsVw 101
JCSG3280490 72  ------HT----Ia-DA----r----e-rLVrLv-Elq---lp----tPgLLr-dewsVw 102
JCSG3259241 188 ------HT----Ia-DA----r----e-rLVrLv-Elq---lp----tPgLLr-dewsVw 218
JCSG3291191 70  ------HT----Ia-DA----r----e-rLVrLv-Elq---lp----tPgLLr-dewsVw 100
JCSG1563014 78  -esE--de----V--Dp----Lgcmrk-lLLQVF-NEl---Vl----dartrr-ineILH 114
JCSG2877574 73  -dwQ--gT----g--DSprarI----a-SFIDLM---i---mN----RakITryGCPVgS 108
JCSG3157610 83  -tEt--sA----r--Dk----L----M-nYLQcWvKDp---At----EqswAe-SClIVK 116
JCSG2874362 100 -Gpg--sp----g--Er----I----h-ALLveh-trt---il----RnldAN-tlfynE 132
JCSG410989  79  -GkE--Rr----A--lA----a----a-fYLSrk-Hrd---AQ-------VdA-GCPLpa 108
JCSG1489692 83  -AHE--aV----L--Df----L----t-GrVEVF-tA-----------Pgqpf-GCmtVQ 111
JCSG3302546 82  -Nag--pl----A--DAk---L----V-kFINMq-all---Gv----tkPqhv-lllIL- 114
JCSG3286340 77  ------NA----r--Er----L----M-SYwQkW-lDn---Ac----pPcdeq-rClVVK 106
JCSG3246034 83  ------NA----r--Er----L----M-SYwQkW-lDn---Ac----pPcdeq-rClVVK 112

QUERY       108 --TAIE-S-DDT---NPML-RE----R---V-RAVID---EWRETI-RTLVQTGIARGEI 147
JCSG3194862 109 --TAIE-S-DDT---NPML-RE----R---V-RAVID---EWRETI-RTLVQTGIARGEI 148
JCSG2883817 113 --TTIE-A-DDT---HdaL-RK----K---A-geAIl---SWKKNL-vTIIKkGIqakEF 152
JCSG452456  105 --AGLR-l-atA---GvpV-Rp----p---L-phpFt---EWREia-tSrLldAVrQSDV 144
JCSG76603   109 --lAsE-T-ali---SepL-Rt----v---c-mkVFk---SWEaVFaRkLMENGFA---- 145
JCSG708183  114 --AlsE-y-Dgr---pgrV-RD----a---V-aeVwS---RWREqL-RAdLtAAVdKGEL 153
JCSG3249225 99  --TmLQ-GikSl---SPen-Rl----K---T-iALrD---RhEENL-RAILRrGVeQGvF 139
JCSG3165599 115 --hkcE-f-tDd---mceI-RQ----Q---r-QSAVl---DcHKgI-tlaLaNAVrRGQL 154
JCSG3264161 102 --lqVw-T-ESTl--NPkI-RD----l---y-NdAyD---RWyQTI-amtIRTGqkQGvF 142
JCSG3280490 103 --lqVw-T-ESTl--NPkI-RD----l---y-NdAyD---RWyQTI-amtIRTGqkQGvF 143
JCSG3259241 219 --lqVw-T-ESTl--NPkI-RD----l---y-NdAyD---RWyQTI-amtIRTGqkQGvF 259
JCSG3291191 101 --lqVw-T-ESTl--NPkI-RD----l---y-NdAyD---RWyQTI-amtIRTGqkQGvF 141
JCSG1563014 115 --hkcE-f-tDd---mceI-RQ----Q---r-QSAVl---DcHKgI-tlaLaNAVrRGQL 154
JCSG2877574 109 --lCtE-l-Skl---Dhaa-Qg----Q---A-NGLFt---lFRDwLqRqFAEAGcT---- 145
JCSG3157610 117 --mAaE-v-aDl---SedM-Rl----i---M-NdgVk---RliarM-adLIRiGqqEGSI 156
JCSG2874362 133 --rGLl-S-pEr---EreM-RK----R---e-R-------EYtEiM-QrLyaeGVAtGEL 168
JCSG410989  109 --TlaE------------------------V-arLpE---gFREVL-srhVEimVTslae 137
JCSG1489692 112 --AGLa-S-gEp---HheI-vD----l---L-tAArE---QmRQTV-ldrfEkALAdGDL 151
JCSG3302546 115 --VSID-f-SgT---GddI-EK----R---A-KAIyr---RmyghV-EqLIaqGqTEGvF 154
JCSG3286340 107 --lSaE-v-aDl---SesM-Ri----t---L-RdgsD---giiErL-vgcLgqGrddGSL 146
JCSG3246034 113 --lSaE-v-aDl---SesM-Ri----t---L-RdgsD---giiErL-vgcLgqGrddGSL 152

QUERY       148 RPEVDADRLALLIIATMEGAVML-ARILETATPLEHA---YTHLATYITQQVRLA 198
JCSG3194862 149 RPEVDADRLALLIIATMEGAVML-ARILETATPLEHA---YTHLATYITQQVRLA 199
JCSG2883817 153 RPDTDVtKIAFsMIAlVEGAILI-hRatKNrAysDYV---FesLedlI------- 196
JCSG452456  145 HqDIDVDsVAhtLVCSVvGTrVV-GgtLEpA------------------------ 174
JCSG76603   146 --EeEANQLGtLInSmIEGGIML-SltnKdkTPL--------------------- 176
JCSG708183  154 pagfDVEQalFeIVA---------------------------------------- 168
JCSG3249225 140 R-EVD-------------------------------------------------- 143
JCSG3165599 155 pgELDAERaAVaMFAyVDGlI---------------------------------- 175
JCSG3264161 143 RdQ-DADELAtrLsAlIDGlgIq-VltgKrGcsVDHm---rqHLndFIeHNI--- 189
JCSG3280490 144 RdQ-DADELAtrLsAlIDGlgIq-VltgKrGcsVDHm---rqHLndFIeHNI--- 190
JCSG3259241 260 RdQ-DADELAtrLsAlIDGlgIq-VltgKrGcsVDHm---rqHLndFIeHNI--- 306
JCSG3291191 142 RdQ-DADELAtrLsAlIDGlgIq-VltgKrGcsVDHm---rqHLndFIeHNI--- 188
JCSG1563014 155 pgELDAERaAVaMFAyVDGlI---------------------------------- 175
JCSG2877574 146 ---TEApaLAMhLLArsQGAAtL-AQ----------------------------- 167
JCSG3157610 157 QtSVvpDvLAqVIyqmylGAALL-SKLyKhkAPLfQA------------------ 192
JCSG2874362 169 ---LDVD--ptVatATLlGAAI--------------------------------- 185
JCSG410989  138 sPEetdvaLAdLVL--MiGGLaL-ARaL--------------------------- 162
JCSG1489692 152 pagTDCtaLAryVMAAVyG------------------------------------ 170
JCSG3302546 155 RsDsgSDELAsIVMAAhDGVLI--------------------------------- 176
JCSG3286340 147 aP-cDArHMAsaLyqlwlGAsLL-SKLhRSpgPLEtA------------------ 181
JCSG3246034 153 aP-cDArHMAsaLyqlwlGAsLL-SKLhRSpgPLEtA------------------ 187

Note
Homologous search is done using BLAST from NCBI BLAST against database pdbnr with expect (E-value cut-off) at 0.001. The structure of a PDB sequence may be fully or partly solved. The non-redundant database pdbnr consists of unique PDB sequences from the representative PDB chains. Each representative chain has the best structural coverage in the set of the same sequences. You could click a sequence ID to see all of PDB chains associated with the sequence ID plus sequence alignments and structural coverages.



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