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NM_002092;NM_002092 |
Protein Sequence Comparative Analysis (PSCA) | |
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NM_002092 PDB Fold Similairty  PDB sequences with significant alignments Sequence information Score E-value JCSG3229738|pdb|2LMI_A|G-rich sequence factor 1 216 2e-56 JCSG3298234|pdb|4QU7_A|G-rich sequence factor 1 169 3e-42 JCSG3257019|pdb|2LXU_A|Heterogeneous nuclear ribonucleoprot... 108 1e-23 JCSG1488299|pdb|2KG1_A|Heterogeneous nuclear ribonucleoprot... 107 2e-23 JCSG469954|pdb|1WEZ_A|Heterogeneous nuclear ribonucleoprot... 106 4e-23 JCSG1482028|pdb|2DB1_A|heterogeneous nuclear ribonucleoprot... 101 1e-21 JCSG1488297|pdb|2HGL_A|Heterogeneous nuclear ribonucleoprot... 100 2e-21 JCSG469970|pdb|1WG5_A|Heterogeneous nuclear ribonucleoprot... 100 2e-21 JCSG1488298|pdb|2HGM_A|Heterogeneous nuclear ribonucleoprot... 94 2e-19 JCSG1491949|pdb|2DHA_A|FLJ20171 protein 68 1e-11 JCSG1491640|pdb|2DGW_A|Probable RNA-binding protein 19 58 1e-08 JCSG975252|pdb|1WEL_A|RNA-binding protein 12 58 2e-08 JCSG1497584|pdb|2DNN_A|RNA-binding protein 12 55 1e-07 JCSG976172|pdb|2CPY_A|RNA-binding protein 12 50 3e-06 JCSG976093|pdb|2CQP_A|RNA-binding protein 12 44 3e-04PDB sequence alignments QUERY 140 SKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSD-CR-IRNGENGIHFLLNRDGKRRGDAL 197 JCSG3229738 2 SKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSD-CR-IRNGENGIHFLLNRDGKRRGDAL 59 JCSG3229738 ------------------------------------------------------------ JCSG3229738 ------------------------------------------------------------ JCSG3298234 ------------------------------------------------------------ JCSG3298234 ------------------------------------------------------------ JCSG3298234 4 ------------VHmRGLPFQANaQDIINFFAp-lKpVR-----ItMeySsSGKatGEAd 45 JCSG3257019 8 ----------FVVKVRGLPWSCSaDEVqRFFSD-CK-IQNGaQGIRFIyTREGRpsGEAF 55 JCSG3257019 ------------------------------------------------------------ JCSG3257019 ------------------------------------------------------------ JCSG1488299 ------------------------------------------------------------ JCSG1488299 ------------------------------------------------------------ JCSG1488299 49 ------------VHmRGLPYKATeNDIyNFFSp-lNpVR-----VHIeIGpDGRvtGEAd 90 JCSG469954 ------------------------------------------------------------ JCSG469954 ------------------------------------------------------------ JCSG469954 18 ------------VHmRGLPYrATeNDIyNFFSp-lN-pmR----VHIeIGpDGRvtGEAd 59 JCSG1482028 10 --LgpEggEgYVVKlRGLPWSCSIEDVqNFLSD-Ct-IHDGvaGVHFIyTREGRQsGEAF 65 JCSG1482028 ------------------------------------------------------------ JCSG1482028 ------------------------------------------------------------ JCSG1488297 37 --LgpEggEgFVVKlRGLPWSCSVEDVqNFLSD-Ct-IHDGaaGVHFIyTREGRQsGEAF 92 JCSG1488297 ------------------------------------------------------------ JCSG1488297 ------------------------------------------------------------ JCSG469970 ------------------------------------------------------------ JCSG469970 ------------------------------------------------------------ JCSG469970 18 ------------VRlRGLPFGCSkEEIVQFFSg-lE-Iv--pNGMtLpVDfQGRstGEAF 61 JCSG1488298 ------------------------------------------------------------ JCSG1488298 34 SNsaDSANDgF-VRlRGLPFGCTkEEIVQFFSg-lE-Iv--pNGItLpVDpEGKitGEAF 88 JCSG1488298 ------------------------------------------------------------ JCSG1491949 25 -----------IVRmRGLPFTATaEEVVaFFGQhCp-ItGGKEGIlFVtypDGRptGDAF 72 JCSG1491949 ------------------------------------------------------------ JCSG1491949 ------------------------------------------------------------ JCSG1491640 ------------------------------------------------------------ JCSG1491640 ------------------------------------------------------------ JCSG1491640 13 ------------VKlRGaPFNvTeKNVMEFLAp-lK-----pvAIRIVrNahGNKtGyiF 54 JCSG975252 ------------------------------------------------------------ JCSG975252 26 ----------FcVylKGLPFEAenKhVIDFFKk-ld-Iv--EDSIYIayGpNGKatGEGF 71 JCSG975252 ------------------------------------------------------------ JCSG1497584 15 -------DDLY-VsVHGMPFSAmeNDVrDFFhg-lR-V----DAVHLLkDHvGRNNGNGL 60 JCSG1497584 ------------------------------------------------------------ JCSG976172 23 -----------------IPFSiTkmDVLQFLEg-ip-V--dENAVHvLVDNNGQglGQAL 61 JCSG976093 ------------------------------------------------------------ QUERY 198 IEMESEQDVQKALEKHRMYMGQRYVEVYEINN----EDVDALMKS--LQVKSSPVVNDGV 251 JCSG3229738 60 IEMESEQDVQKALEKHRMYMGQRYVEVYEINN----EDVDALMKS--LQVKSSP------ 107 JCSG3229738 13 -----------------------------------------------------------L 13 JCSG3229738 ------------------------------------------------------------ JCSG3298234 ------------------------------------------------------------ JCSG3298234 ------------------------------------------------------------ JCSG3298234 46 VHFETHEDAvaAMlKdRsHVhHRYIELF-------------------------------- 73 JCSG3257019 56 VELESEDEVKlALKKdRetMGHRYVEVFKsNN----vEMDwVLKh--tgpNSpdTANDG- 108 JCSG3257019 9 -----------------------------------------------------------V 9 JCSG3257019 ------------------------------------------------------------ JCSG1488299 ------------------------------------------------------------ JCSG1488299 ------------------------------------------------------------ JCSG1488299 91 VEFaTHEEAvaAMSKdRanMqHRYIELF-------------------------------- 118 JCSG469954 ------------------------------------------------------------ JCSG469954 ------------------------------------------------------------ JCSG469954 60 VEFaTHEDAvaAMaKdKanMqHRYVELF-------------------------------- 87 JCSG1482028 66 VELESEDDVKlALKKdResMGHRYIEVFKsHR----tEMDwVLK---------------- 105 JCSG1482028 19 -----------------------------------------------------------V 19 JCSG1482028 ------------------------------------------------------------ JCSG1488297 93 VELgSEDDVKmALKKdResMGHRYIEVFKsHR----tEMDwVLK---------------- 132 JCSG1488297 46 -----------------------------------------------------------V 46 JCSG1488297 ------------------------------------------------------------ JCSG469970 9 ---------------------------------------------------SpdTANDGf 17 JCSG469970 ------------------------------------------------------------ JCSG469970 62 VQFaSQEiAEKALKKHKerIGHRYIEIFKsSR----aEV--------------------- 96 JCSG1488298 36 ---------------------------------------------------SAdsANDGf 44 JCSG1488298 89 VQFaSQElAEKALgKHKerIGHRYIEVFKsSQ----EEV--------------------- 123 JCSG1488298 ------------------------------------------------------------ JCSG1491949 73 VlFacEEyAQNALRKHKdlLGKRYIELFRsTa----aEVQqVLNr--FSsaSGP------ 120 JCSG1491949 22 --------------------------------------------------------NQvI 25 JCSG1491949 ------------------------------------------------------------ JCSG1491640 ------------------------------------------------------------ JCSG1491640 ------------------------------------------------------------ JCSG1491640 55 VDFSNEEEVKQALKcNReYMGgRYIEVF-------------------------------- 82 JCSG975252 ------------------------------------------------------------ JCSG975252 72 VEFRNEaDyKaALcRHKQYMGNRFIQVHpITKkgmlEkIDmIrKr--LQ----------- 118 JCSG975252 ------------------------------------------------------------ JCSG1497584 61 VKFlSpQDTfEALKRNRMlMiQRYVEV--------------------------------- 87 JCSG1497584 15 --------------------------------------------------------DDly 18 JCSG976172 62 VQFKNEDDARKSeRlHRkkLNgReAfVHvVTl----EDMreIeKNppaQgKSGP------ 111 JCSG976093 ------------------------------------------------------------ QUERY 252 VRLRGLPYSCNEKDIVDFFAGLNIVD-----ITFVMDYRGRRK-TGEAYVQFEEPEMANQ 305 JCSG3229738 106 ------------------------------------------------------------ 107 JCSG3229738 14 IRaQGLPWSCTmEDVLNFFSdcRIrNgeng-IhFLLNrdGKRR--GDAlIEMESeQdVQK 70 JCSG3229738 ------------------------------------------------------------ JCSG3298234 ------------------------------------------------------------ JCSG3298234 4 VHMRGLPFQANaQDIINFFApLKpVr-----IT--MEYsSsgKaTGEAdVHFEthEdAva 56 JCSG3298234 72 ------------------------------------------------------------ 73 JCSG3257019 107 ------------------------------------------------------------ 108 JCSG3257019 10 VKVRGLPWSCSadEVqrFFSdcKIqNgaqg-IrFIytrEGR-p-SGEAFVELESeDeVKl 66 JCSG3257019 ------------------------------------------------------------ JCSG1488299 ------------------------------------------------------------ JCSG1488299 49 VHMRGLPYKATENDIyNFFSpLNpVr-----VhIeIgpdG-Rv-TGEAdVEFathEeAva 101 JCSG1488299 117 ------------------------------------------------------------ 118 JCSG469954 ------------------------------------------------------------ JCSG469954 18 VHMRGLPYrATENDIyNFFSpLNpMr-----VhIeIgpdG-Rv-TGEAdVEFathEdAva 70 JCSG469954 86 ------------------------------------------------------------ 87 JCSG1482028 104 ------------------------------------------------------------ 105 JCSG1482028 20 VKLRGLPWSCSiEDVqNFLSdcTIhDgvag-VhFIytrEGRQ--SGEAFVELESeDdVKl 76 JCSG1482028 ------------------------------------------------------------ JCSG1488297 131 ------------------------------------------------------------ 132 JCSG1488297 47 VKLRGLPWSCSvEDVqNFLSdcTIhDgaag-VhFIytrEGRQ--SGEAFVELgSeDdVKM 103 JCSG1488297 ------------------------------------------------------------ JCSG469970 18 VRLRGLPFGCSKEEIVQFFSGLEIVpng---MTLpVDFQGR-S-TGEAFVQFaSqEIAEK 72 JCSG469970 ------------------------------------------------------------ JCSG469970 95 ------------------------------------------------------------ 96 JCSG1488298 45 VRLRGLPFGCTKEEIVQFFSGLEIVpng---ITLpVDpEGKi--TGEAFVQFaSqELAEK 99 JCSG1488298 122 ------------------------------------------------------------ 123 JCSG1488298 ------------------------------------------------------------ JCSG1491949 119 ------------------------------------------------------------ 120 JCSG1491949 26 VRMRGLPFTATaEEVVaFFGqhcpItggkegIlFVt-YpdgRp-TGDAFVlFaceEyAQN 83 JCSG1491949 ------------------------------------------------------------ JCSG1491640 13 VKLRGaPFNvTEKNVMEFLApLKpVa-----IrIVrNaHGN-K-TGyiFVDFSNeEeVKQ 65 JCSG1491640 ------------------------------------------------------------ JCSG1491640 81 ------------------------------------------------------------ 82 JCSG975252 28 VyLKGLPFEAENKhVIDFFkkLDIVE-----dSIyIaYgpNgKaTGEGFVEFRNeadyKa 82 JCSG975252 117 ------------------------------------------------------------ 118 JCSG975252 ------------------------------------------------------------ JCSG1497584 86 ------------------------------------------------------------ 87 JCSG1497584 19 VsVHGMPFSAmENDVrDFFhGLRVda-----VhLLkDHvG-RN-NGNGlVKFlSPQdTfE 71 JCSG976172 110 ------------------------------------------------------------ 111 JCSG976093 ------------------------------------------------------------ QUERY 306 ALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNED 365 JCSG3229738 106 ------------------------------------------------------------ 107 JCSG3229738 71 ALeKHRmyMGQRYVEVYeiNNEDV------------------------------------ 94 JCSG3229738 ------------------------------------------------------------ JCSG3298234 ------------------------------------------------------------ JCSG3298234 57 AMLKdRSHVhHRYIELF------------------------------------------- 73 JCSG3298234 72 ------------------------------------------------------------ 73 JCSG3257019 107 ------------------------------------------------------------ 108 JCSG3257019 67 ALkKdREtMGHRYVEVFkSNNvEM------------------------------------ 90 JCSG3257019 ------------------------------------------------------------ JCSG1488299 ------------------------------------------------------------ JCSG1488299 102 AMsKdRaNMqHRYIELF------------------------------------------- 118 JCSG1488299 117 ------------------------------------------------------------ 118 JCSG469954 ------------------------------------------------------------ JCSG469954 71 AMaKdKaNMqHRYVELF------------------------------------------- 87 JCSG469954 86 ------------------------------------------------------------ 87 JCSG1482028 104 ------------------------------------------------------------ 105 JCSG1482028 77 ALkKdRESMGHRYIEVFkSHRTEM-dwVlKHSGpNsASgPSS------------------ 117 JCSG1482028 ------------------------------------------------------------ JCSG1488297 131 ------------------------------------------------------------ 132 JCSG1488297 104 ALkKdRESMGHRYIEVFkSHRTEM------------------------------------ 127 JCSG1488297 ------------------------------------------------------------ JCSG469970 73 ALkKHKERIGHRYIEIFkSsRaEVRT---------------------------------- 98 JCSG469970 ------------------------------------------------------------ JCSG469970 95 ------------------------------------------------------------ 96 JCSG1488298 100 ALgKHKERIGHRYIEVFkSsQEEVRSY--------------------------------- 126 JCSG1488298 122 ------------------------------------------------------------ 123 JCSG1488298 ------------------------------------------------------------ JCSG1491949 119 ------------------------------------------------------------ 120 JCSG1491949 84 ALrKHKDlLGKRYIELFrStaaEVQ----------------------------------- 108 JCSG1491949 ------------------------------------------------------------ JCSG1491640 66 ALkcNREyMGGRYIEVF------------------------------------------- 82 JCSG1491640 ------------------------------------------------------------ JCSG1491640 81 ------------------------------------------------------------ 82 JCSG975252 83 ALcRHKQyMGNRFIQVhPitKKgMlekIdmiR-KRLqSgPSS------------------ 123 JCSG975252 117 ------------------------------------------------------------ 118 JCSG975252 ------------------------------------------------------------ JCSG1497584 86 ------------------------------------------------------------ 87 JCSG1497584 72 ALkRNRmlMiQRYVEVsPAtERQ------------------------------------- 94 JCSG976172 110 ------------------------------------------------------------ 111 JCSG976093 ------------------------------------------------------------ QUERY 366 IQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK 425 JCSG3229738 106 ------------------------------------------------------------ 107 JCSG3229738 93 ------------------------------------------------------------ 94 JCSG3229738 3 ---------------------KLeEeVD-----DVfLIRaQGLPWSCTmEDVLNFFSdcR 36 JCSG3298234 1 ----------------------------------MHFVHMRGLPFQANAQDIINFFAPLK 26 JCSG3298234 72 ------------------------------------------------------------ 73 JCSG3298234 72 ------------------------------------------------------------ 73 JCSG3257019 107 ------------------------------------------------------------ 108 JCSG3257019 89 ------------------------------------------------------------ 90 JCSG3257019 10 -------------------------------------VkVRGLPWSCSADEVqRFFSdcK 32 JCSG1488299 47 -----------------------------------HcVHMRGLPYKATeNDIyNFFSPLN 71 JCSG1488299 117 ------------------------------------------------------------ 118 JCSG1488299 117 ------------------------------------------------------------ 118 JCSG469954 16 -----------------------------------HcVHMRGLPYRATeNDIyNFFSPLN 40 JCSG469954 86 ------------------------------------------------------------ 87 JCSG469954 86 ------------------------------------------------------------ 87 JCSG1482028 104 ------------------------------------------------------------ 105 JCSG1482028 116 ------------------------------------------------------------ 117 JCSG1482028 18 -----------------------------------YvVkLRGLPWSCSiEDVqNFLSdct 42 JCSG1488297 131 ------------------------------------------------------------ 132 JCSG1488297 126 ------------------------------------------------------------ 127 JCSG1488297 47 -------------------------------------VkLRGLPWSCSVEDVqNFLSdct 69 JCSG469970 97 ------------------------------------------------------------ 98 JCSG469970 12 -------------------------------TANdgFVRLRGLPFgCSkEEIVQFFSgLE 40 JCSG469970 95 ------------------------------------------------------------ 96 JCSG1488298 125 ------------------------------------------------------------ 126 JCSG1488298 122 ------------------------------------------------------------ 123 JCSG1488298 44 ------------------------------------FVRLRGLPFgCTkEEIVQFFSgLE 67 JCSG1491949 119 ------------------------------------------------------------ 120 JCSG1491949 107 ------------------------------------------------------------ 108 JCSG1491949 13 ------------------------EVAQFlSkENqvIVRMRGLPFtATAEEVVaFFGqhc 48 JCSG1491640 81 ------------------------------------------------------------ 82 JCSG1491640 7 -----------------------------GTTc--HtVkLRGaPFNVTeKNVMEFLAPLK 35 JCSG1491640 81 ------------------------------------------------------------ 82 JCSG975252 122 ------------------------------------------------------------ 123 JCSG975252 117 ------------------------------------------------------------ 118 JCSG975252 28 -------------------------------------VYLKGLPFEAEnKhVIDFFkkLd 50 JCSG1497584 86 ------------------------------------------------------------ 87 JCSG1497584 93 ------------------------------------------------------------ 94 JCSG976172 110 ------------------------------------------------------------ 111 JCSG976093 18 -------------------------------------IkVQNMPFtVSiDEILDFFygyQ 40 QUERY 426 ----PVR-----ITMEYSSSGKATGEADVHFETHEDAVAAM--LKDRSHVHHRYIELFLN 474 JCSG3229738 106 ------------------------------------------------------------ 107 JCSG3229738 93 ------------------------------------------------------------ 94 JCSG3229738 37 -----IRngengIhFllNrDGKrrGDAlIEMESEQDVqkAL--eKhRmYMgQRYVEVY-- 87 JCSG3298234 27 ----PVR-----ITMEYSSSGKATGEADVHFETHEDAVAAM--LKDRSHVHHRYIELFLN 75 JCSG3298234 72 ------------------------------------------------------------ 73 JCSG3298234 72 ------------------------------------------------------------ 73 JCSG3257019 107 ------------------------------------------------------------ 108 JCSG3257019 89 ------------------------------------------------------------ 90 JCSG3257019 33 ----iqNgaqg-IrFiYTrEGRpSGEAfVELESEDEVklAL--kKDREtMgHRYVEVF-- 83 JCSG1488299 72 ----PVR-----VhIEiGpDGRVTGEADVEFaTHEEAVAAM--sKDRANMQHRYIELFLN 120 JCSG1488299 117 ------------------------------------------------------------ 118 JCSG1488299 117 ------------------------------------------------------------ 118 JCSG469954 41 ----PMR-----VhIEiGpDGRVTGEADVEFaTHEDAVAAM--aKDKANMQHRYVELFLN 89 JCSG469954 86 ------------------------------------------------------------ 87 JCSG469954 86 ------------------------------------------------------------ 87 JCSG1482028 104 ------------------------------------------------------------ 105 JCSG1482028 116 ------------------------------------------------------------ 117 JCSG1482028 43 ihdgvAg-----VhFiYTrEGRqSGEAfVELESEDDVklAL--kKDREsMgHRYIEVF-- 93 JCSG1488297 131 ------------------------------------------------------------ 132 JCSG1488297 126 ------------------------------------------------------------ 127 JCSG1488297 70 ihdgaAg-----VhFiYTrEGRqSGEAfVELgSEDDVkmAL--kKDREsMgHRYIEVF-- 120 JCSG469970 97 ------------------------------------------------------------ 98 JCSG469970 41 iv--Png-----MTLpvDfQGRSTGEAfVQFaSQEiAekAL--kKhKERIgHRYIEIFkS 91 JCSG469970 95 ------------------------------------------------------------ 96 JCSG1488298 125 ------------------------------------------------------------ 126 JCSG1488298 122 ------------------------------------------------------------ 123 JCSG1488298 68 iv--Png-----ITLpvDpEGKiTGEAfVQFaSQElAekAL--gKhKERIgHRYIEVFkS 118 JCSG1491949 119 ------------------------------------------------------------ 120 JCSG1491949 107 ------------------------------------------------------------ 108 JCSG1491949 49 ----PItggkegIlFvtypDGRpTGDAfVlFacEEyAqnAL--rKhKDlLgkRYIELF-- 100 JCSG1491640 81 ------------------------------------------------------------ 82 JCSG1491640 36 ----PVa-----IrIvrNAhGNkTGyifVdFSNEEEVkqAL--kcNREYMggRYIEVF-- 82 JCSG1491640 81 ------------------------------------------------------------ 82 JCSG975252 122 ------------------------------------------------------------ 123 JCSG975252 117 ------------------------------------------------------------ 118 JCSG975252 51 ----iVEds---IyIaYGpNGKATGEGfVEFRNEaDykAAL--cRhKQYMgNRFIQV--- 98 JCSG1497584 86 ------------------------------------------------------------ 87 JCSG1497584 93 ------------------------------------------------------------ 94 JCSG976172 110 ------------------------------------------------------------ 111 JCSG976093 41 vi--Pgs-----VcLKYNEKGmpTGEAmVaFESRDEATAAVidLNDRp-IgsRkVKLvLG 92 QUERY 475 SCPKGK 480 JCSG3229738 106 ------ 107 JCSG3229738 93 ------ 94 JCSG3229738 86 ------ 87 JCSG3298234 76 SCPKGK 81 JCSG3298234 72 ------ 73 JCSG3298234 72 ------ 73 JCSG3257019 107 ------ 108 JCSG3257019 89 ------ 90 JCSG3257019 82 ------ 83 JCSG1488299 121 S----- 121 JCSG1488299 117 ------ 118 JCSG1488299 117 ------ 118 JCSG469954 90 S----- 90 JCSG469954 86 ------ 87 JCSG469954 86 ------ 87 JCSG1482028 104 ------ 105 JCSG1482028 116 ------ 117 JCSG1482028 92 ------ 93 JCSG1488297 131 ------ 132 JCSG1488297 126 ------ 127 JCSG1488297 119 ------ 120 JCSG469970 97 ------ 98 JCSG469970 92 S----- 92 JCSG469970 95 ------ 96 JCSG1488298 125 ------ 126 JCSG1488298 122 ------ 123 JCSG1488298 119 S----- 119 JCSG1491949 119 ------ 120 JCSG1491949 107 ------ 108 JCSG1491949 99 ------ 100 JCSG1491640 81 ------ 82 JCSG1491640 81 ------ 82 JCSG1491640 81 ------ 82 JCSG975252 122 ------ 123 JCSG975252 117 ------ 118 JCSG975252 97 ------ 98 JCSG1497584 86 ------ 87 JCSG1497584 93 ------ 94 JCSG976172 110 ------ 111 JCSG976093 93 SgP--- 95 Note Homologous search is done using BLAST from NCBI BLAST against database pdbnr with expect (E-value cut-off) at 0.001. The structure of a PDB sequence may be fully or partly solved. The non-redundant database pdbnr consists of unique PDB sequences from the representative PDB chains. Each representative chain has the best structural coverage in the set of the same sequences. You could click a sequence ID to see all of PDB chains associated with the sequence ID plus sequence alignments and structural coverages. |
