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   YP_111841.1;PU10172A
 Protein Sequence Comparative Analysis   (PSCA)
 
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 FFAS03 results for 381695
current user: public


Query: PU10172A YP_111841.1 381695 PDB-2008-12-15, from JCSG0113

Results of FFAS03 search in PDB0113
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTLTRDSLLTLEAYAKVRRQEHARVIAHKKRRAVSIGNHLRLLFEDETTIRYQIHEMLHIEKIFDEDGIQAELDAYLPLVPDGSNLKATLQIEYENETQRRAALARLVGIEDRVFLRVDDEAPVYAIADEDLERDTAEKTSAVHFLRFELGDAMKAKLKAGAPLSIGCDHPHYPIQAARIDPDVAASLAGDLDLast
1 -109.0003fjv_A mol:protein length:194 uncharacterized novel protein  ali model follow..  100  2MTLTRDSLLTLEAYAKVRRQEHARVIAHKKRRAVSIGNHLRLLFEDETTIRYQIHEMLHIEKIFDEDGIQAELDAYLPLVPDGSNLKATLQIEYENETQRRAALARLVGIEDRVFLRVDDEAPVYAIADEDLERDTAEKTSAVHFLRFELGDAMKAKLKAGAPLSIGCDHPHYPIQAARIDPDVAASLAGDLD 194
2 -6.1702ys3_A mol:protein length:137 Unc-112-related protein 2  ali model follow..  6  17.................IFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDVNVSGQKFCKLLVPSPEGMSEIYLRCQDEQQYARWMAGC...................................................................................... 107
3 -6.1602lko_A mol:protein length:138 Fermitin family homolog 2  ali model follow..  10  6...DITSIPELADYIKVFKPKKLTLKGYKQ-YWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNKLLIPVAEGMNEIWLRCDNEKQYAHWMAAC...................................................................................... 109
4 -6.1504bbk_A mol:protein length:165 FERMITIN FAMILY HOMOLOG 1  ali model follow..  13  1MASSGLEV-KLADYLKLFRPKKLMLKACKQ-YWFVFKDTSIAYFKNKELEQGEPIEKLNLRGCEIVPDVNVSGRKFGKLLIPVADGMNEVYLRCDHEDQYARWMAAC...................................................................................... 118
5 -5.8204eee_A mol:protein length:118 14L protein  ali model follow..  11  13.........................VPVKETSKVVLECRGDSYFRHFSYVYWIIGKNKTVDQLPPNSGYRERIYLFKKPHRCENRPRADLILTNITDEMRNEKLT........................................................................................ 92
6 -5.7802pe8_A mol:protein length:105 Splicing factor 45  ali model follow..  13  3...........................................MGKCPTKVVLLRNMVGAGEVDEDVETKEECEKYGKVGGAPDDEAVRIFLEFERVESAIKAVVDLNG.................................................................................... 78
7 -5.7702fho_B mol:protein length:87 spliceosomal protein p14  ali model follow..  18  10....................................................EVNRILYIRNLITAEEMYDIFGKYGPIVGNTPETRGTAYVVYEDIFDAKNACDHLSGFN.................................................................................. 75
8 -5.6504eae_A mol:protein length:190 Lmo1068 protein  ali model follow..  13  22...................................LGGDVTTTYLSSSKSFQKDFEALTLFKVEHVINPTKEVSASNPYLANKNGYVITLDISIKNNSKKDKMYKADQISLLGASKSVGGSLDNFIPSGFHLIGSSSDPKTARGLLTFTMDEATYNDLAKDSQIGV........................... 164
9 -5.6402dny_A mol:protein length:119 Fuse-binding protein-interacting repressor, i  ali model follow..  12  11............................................RKQESTVMVLRNMVDPKDIDDDGEVTEECGKFGAVNEEDAEIIVKIFVEFSIASETHKAIQALNG.................................................................................... 88
10 -5.5703ue2_A mol:protein length:118 Poly(U)-binding-splicing factor PUF60  ali model follow..  12  16............................................RKQESTVMVLRNMVDPKDIDDDGEVTEECGKFGAVNEEDAEIIVKIFVEFSIASETHKAIQALNG.................................................................................... 93
FFAS is supported by the NIH grant R01-GM087218-01
4 8 1 7 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.

                                                                                                                                                                                                   

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