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   YP_001050605.1;MI4130F
 Protein Sequence Comparative Analysis   (PSCA)
 
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 FFAS03 results for 398981
current user: public


Query: MI4130F YP_001050605.1 398981 PDB-2010-07-09, from JCSG0113

Results of FFAS03 search in PDB0113
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIKETVFKSFDTPSALEQQLASKIASQLQEAVDARGKASLVVSGGSTPLKLFQLLSMKSIDWSDVYITLADERWVEADADASNERLVREHLLQNRASNAKFRGLKNMFSTAEAGADMAAESLSNFPRPFDVVVLGMGNDGHTCSWFPCSAELENALTTQALCVATNPTTAPHGRITLSKSAILNSRQIYLHLVGEQKLSVYRQALESDDVHAMPIRAVLAQRKTPVDVFWSALast
1 -102.0003nwp_A mol:protein length:233 6-phosphogluconolactonase  ali model follow..  100  2MIKETVFKSFDTPSALEQQLASKIASQLQEAVDARGKASLVVSGGSTPLKLFQLLSMKSIDWSDVYITLADERWVEADADASNERLVREHLLQNRASNAKFRGLKNMFSTAEAGADMAAESLSNFPRPFDVVVLGMGNDGHTCSWFPCSAELENALTTQALCVATNPTTAPHGRITLSKSAILNSRQIYLHLVGEQKLSVYRQALESDDVHAMPIRAVLAQRKTPVDVFWSA 233
2 -95.3003lwd_A mol:protein length:226 6-phosphogluconolactonase  ali model follow..  42  2....MMNTTQEGRQRLAERLADTVAQALEADLAKRERALLVVSGGSTPKPFFTSLAAKALPWARVDVTLADERWVTADDADSNARLVRETLLVGPAAEACFHPLTTDDDTPEAGVETVAERLESLPWPASAVILGMGGDGHTASLFPDSEQLATALETTSAAVVVHAPSVPQARITLSASRLADAGLHVLHITGNDKRRVLAEALAGDDVRQLPIRAFLSQPIA---TYWA. 225
3 -88.8001pbt_A mol:protein length:244 6-phosphogluconolactonase  ali model follow..  21  16..HMEKTVIYLLEDGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLPVYEKLAEQKFPWNRIHFFLSDERYVPLDSDQSNFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIRSATDQFDLAILGMGPDGHVASIFDLETGNKDNL----VTFTDPSGDPKVPRVTLTFRALNTSLYVLFLIRGKEKINRLTEILKDT---PLPAYFVRGKEKTVWFVGKGS 238
4 -87.9001vl1_A mol:protein length:232 6-phosphogluconolactonase  ali model follow..  22  7...MEKTVIYLLEDGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLPVYEKLAEQKFPWNRIHFFLSDERYVPLDSDQSNFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIRSATDQFDLAILGMGPDGHVASIFDLETGNKDNL----VTFTDPSGDPKVPRVTLTFRALNTSLYVLFLIRGKEKINRLTEILKDTP---LPAYFVRGKEKTVWFVG... 225
5 -87.1003lhi_A mol:protein length:232 Putative 6-phosphogluconolactonase  ali model follow..  37  3....FVWHEYENAAEAAQSLADAVADALQGALDEKGGAVLAVSGGRSPIAFFNALSQKDLDWKNVGITLADERIVPTNHADSNTGLVREYLLKNKAAAAVWIPMVEDGKTETELHPDAVDYALKHYKQPDVLILGMGNDGHTASIFPKAPQFQTAIDGSAALVHTTPVTAPHERISMTLDAIAHTGHVFLAIQGEEKKAVFDQAAQGEN-REYPISLVLNHQGVNCHVFYA. 231
6 -84.2003oc6_A mol:protein length:248 6-phosphogluconolactonase  ali model follow..  29  5.MSDTVIERHADTAALVAAAGDRLVDAISSAIGERGQATIVLTGGGTGIGLLKRVREGEIDWSKVHIYWGDERFVPQDDDERNDKQAREALLDHIGIPPVNVHAMAAGDDLEAAAAGYAQLLSANFPGFDVHLLGMGGEGHVNSLFPDTDAVRET--ERLVVGVSDSPKPPPRRITLTLPAVQNSREVWLVVSGEAKADAVAAAVGGADPVDIPAAGAVGRERTVWLVDEAA 244
7 -84.0003ico_A mol:protein length:268 6-phosphogluconolactonase  ali model follow..  26  15.SMSSSIEIFPDSDILVAAAGKRLVGAIGAAVAARGQALIVLTGGGNGIALLRYLSAQQIEWSKVHLFWGDERYVPEDDDERNLKQARRALLNHVDIPSNQVHPMAAGGDLDAAALAYEQVLAASAPNFDVHLLGMGPEGHINSLFPHSPAVLES--TRMVVAVDDSPKPPPRRITLTLPAIQRSREVWLLVSGPGKADAVAAAIGGADPVSVPAAGAVGRQNTLWLLDRDA 256
8 -83.9003tx2_A mol:protein length:251 Probable 6-phosphogluconolactonase  ali model follow..  25  5.MSETIIEKYADTDALVTAAGDRLASAITGALAERGKAMIVLTGGGTGIALLKHLRDSGLDWTNVHVFWGDDRYVPKTDPERNAWQAWEALLEHVNFPLRNMHAMPNGTDLDAAALAYEQLLAANAPAFDVHLLGMGGEGHINSLFPHTDAVKET--QRLVVAVPDSPKPPPQRITLTLPAIQRSREVWLVVSGEAKADAVAAAVGGADPVDVPAAGAKGIERTVWLLDEAA 246
9 -82.8003css_A mol:protein length:267 6-phosphogluconolactonase  ali model follow..  25  1MTSAPTVKICENLSQMSFAAREVILAAIDARVDKSVPVVLALSGGSTPKRLYEELHEALLQQHAVQFILGDERLLSEDDEQSNFSMATKALLRDVPSSATSKDEKGGLDGAWAVAQDYEVKLLNCLPVVDIVLLGFGSDGHTASIFPDSVAATDEEHVVSVSFPSPTMSPKVWRVTLSKTVIQYAKHVVVLAAGKDKNWVVRGVLSESPTDPLPVSRFLRRGSVTLLLDPGA 261
10 -82.2002j0e_A mol:protein length:266 6-PHOSPHOGLUCONOLACTONASE  ali model follow..  23  1MSFKPTISVHATPQELSAAGCRKIVEIIEASGSQQWPLSIALAGGSTPKMTYARLHDELREKRALRFFMGDERMVPADSTDSNYNMAREVLLHDIPDDLVTPSAEATSADAMRVAEAYGKQLASLLPVFDVVLLGLGSDGHTASIFPGSQAETDGKVVVSVGFPSETMKPKVWRVTLSPATIMQARNVIVLATGAEKKWVVDGILADTAHKAPVARFLRGEGNVSFLLDKEI 259
11 -78.2001y89_A mol:protein length:238 devB protein  ali model follow..  23  2....INHKIFPTADAVVKSLADDML----AYSQQGQPVHISLSGGSTPKMLFKLLASNDIQWKNLHFWWGDERCVAPDDAESNYGEANALLFSKINMPAQNIHRILGENEPQAEAERFAQAMAHVIPVFDWILLGVGADGHTASLFPGQTDYADA----NLSVVASHPESGQLRVSKTAKVLQAAKRISYLVLGAGKAEIVEQIHTTPAEQPYPAAKIHSTSGTEWYLDSDA 233
12 -78.0003e15_A mol:protein length:312 Glucose-6-phosphate 1-dehydrogenase  ali model follow..  19  18.LHNVKYLEAKDLTDFNQKSAYYICHQIAELSKEGGHVVIGLSGGKTPIDVYKNIADIKIDTSKLIFFIIDERYKRDDHKFSNYNNIKFLFESLKINEKEQLYRPDTSKNIVECVRDYNEKIKNMVTKVDIAILGMGSDFHIASLFPNIFFNIYMLLKEYVYFTTTNNFDVRKRITVSLDLLGNASSKIFLLNSTDKLDLWKNMLLKSNYCLYPAVYLIDSMNTTVVTCGYT 289
13 -60.1002ri1_A mol:protein length:235 Glucosamine-6-phosphate deaminase  ali model follow..  17  1..GSMKTIKVKNKTEGSKVAFRMLEEEITF-----GAKTLGLATGSTPLELYKEIRESHLDFSDMVSINLDEYVLSADDKQSYAYFMKQNLFAAKPFK-KSYLPNGLAADLAKETEYYDQILAQ--YPIDLQILGIGRNAHIGFNEPGTAFLTPSTIAANSRFFEKAEDVPKQAISMGLASIMSAKMILLMAFGEEKAEAVAAMVKGPVTEEIPASILQTHPKVILIVDEKA 231
14 -59.0002bkv_A mol:protein length:242 GLUCOSAMINE-6-PHOSPHATE DEAMINASE  ali model follow..  18  1....MKVMECQTYEELSQIAARITADT----IKEKPDAVLGLATGGTPEGTYRQLIRENLSFQNITTVNLDEYALSSDDPNSYHFYMNDRFFQHIDSPSRHFIPNGNADDLEAECRRYEQLVDSLGD-TDIQLLGIGRNGHIGFNEPGTSTLNEQTRQANARYFPSIDSVPKKALTMGIQTILSSKRILLLISGKSKAEAVRKLLEGNISEDFPASALHLHSDVTVLIDREA 237
15 -56.6001cd5_A mol:protein length:266 PROTEIN (GLUCOSAMINE 6-PHOSPHATE DEAMINASE)  ali model follow..  15  1....MRLIPLTTAEQVGKWAARHIVNRINAF-TADRPFVLGLPTGGTPMTTYKALVEGQVSFKHVVTFNMDEYVLPKEHPESYYSFMHRNFFDHVDIAENINLLNGNAPDIDAECRQYEEKIRSYGK-IHLFMGGVGNDGHIAFNEPASSTLTHDTRVANSRFFNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPS 243
16 -55.4001ne7_A mol:protein length:289 Glucosamine-6-phosphate isomerase  ali model follow..  17  1....MKLIILEHYSQASEWAAKYIRNRIIQF-GPEKYFTLGLPTGSTPLGCYKKLIEGDLSFKYVKTFNMDEYVLPRDHPESYHSFMWNNFFKHIDIPENTHILDGNAVDLQAECDAFEEKIKAAGG-IELFVGGIGPDGHIAFNEPGSSTLAMDTILANARFFDELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDA 243
17 -55.1003hn6_A mol:protein length:289 Glucosamine-6-phosphate deaminase  ali model follow..  17  14..GSMRLIIRPTYEDISKWAANHVAQKINEF-TKENPFILGLPTGSSPIGMYKNLIEKKISFQNVITFNMDEYIIEENHPESYHSFMWNNFFSHIDIKENINILNGNASNLKKECEEYEKKIKSFGG-IMLFVGGIGPDGHIAFNEPGSSTLTQDTIIANSRFFGDVNKVPKNALTVGIGTIMDSQEVLIIVNGHNKARALKHAIEKGVNHMWTISALQLHKNAIIVSDKNA 258
18 -18.7002okg_A mol:protein length:255 Central glycolytic gene regulator  ali model follow..  9  33..........DQSPWVKKEMGRAAVACMKKRFSGKN--IVAVTGGTTIEAVAEMMTPDS---KNRELLFVPARGGLGEDVKNQANTICAHMAEKASGTYRLLFVPGQLSQGAYSSIIEEPSVKEVIKSASMLVHGIGEAKTMAQRRNTPLEDLKKIDDNDAV-ADGEVVHKVHSVGMQLDDIDAIPDIIAVAGGSSKAEAIEAYFKKPRNTVL................... 241
19 -17.0002gnp_A mol:protein length:266 transcriptional regulator  ali model follow..  15  34..........DTPTILSERISQVAAGVLRNLIDDNM--KIGFSWGKSLSNLVDLIHSKSVRNVHFYPLAGG---PSHIHAKYHVNTLIYEMSRKFHGECTFMNATIVQENKLLADGILQENLKNSWKDLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTVGEENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNHL................... 249
20 -16.1003efb_A mol:protein length:266 Probable sor-operon regulator  ali model follow..  8  37..........EDEETQLAMMGLHGAQLLDRLLEPGD--IVGFSWGRAVSALVENLPQAG---RQLICVPIIGGPSGKLESRYHVNTLTYSAAAKLKGESHLADFPALLDNPLIRNGIMQKTISAYWDNLDIALVGIGSPAIRDGANWHAFYGGEESDDLNARQVAGETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIIGALRGKYINCL................... 254
21 -16.0002r5f_A mol:protein length:264 Transcriptional regulator, putative  ali model follow..  10  34..........DDEESIKQAIGSAAAHYLETSLSAQDHIGIS-SWSSTIRAMVSHMHPQPGKQSAQEVVQLL-----GNKGAFEATLLTQRLATLLNCPAFLLPSQSIEQSVESKQRIVEKEVLHRFDSITLAIVGIGELEPSQLLRNSGNYYTEDMLRVLAE----LEEDEEFVVSMGLGKLRSINRVLGLAGGVRKVQAIKGALLGGYLDVL................... 252
22 -15.8003nze_A mol:protein length:267 Putative transcriptional regulator, sugar-bin  ali model follow..  11  33..........LNEAETLDRVAMQAARTIGPLVDSNA--IIGVAWGATLSAVSRHLTRKMT--HDSIVVQLNGAGNMQTTGITYASDIMRRFGSAYGARVEQFPVPAFFDHASTKTAMWNERILDLQARMSIAIFGVGSGGYLDEHDLTMLAADDVVGDVATVFFRSDGSSNERSTGPSHEQLRQVRRRICVVSGASKINGLQGALAAGLATDL................... 251
23 -15.4003kv1_A mol:protein length:267 Transcriptional repressor  ali model follow..  8  22LKRALISLDQPNTNEQRKQVAALVSSYLNNNLQEGM--AVAVGQGQNVAAVADHAGIVTQRNARFVSAIGG---THRSGDIINADHICRRLAKKYGGSSETLYAPAYVNDPSLRSAFMEHETLSQARKAEFALVGIGDMDENSHMVKLGFFTPKEFVEARLNDGIVGDLMRGRVIGLEMEDLRQIPNVVAMASESRKALSIMGALRTGVIDVL................... 249
24 -13.4002o0m_A mol:protein length:345 Transcriptional regulator, SorC family  ali model follow..  12  118..........DIQKKVLSDFGDVLTNTLNLLL-PNGENTIAVMGGTTMAMVAENMGSLETEKRHNLFVPA------GEAVSVQANSISAVMANKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVISHANCVVHSIGRALHMAARRKMSDDEMVMLKQKNAV-EEGKVVYKIPRIGLQLKNLQEIPYVVAIAGGKTKAKAIRAYMKNA........................ 323
25 -11.3002w48_A mol:protein length:315 SORBITOL OPERON REGULATOR  ali model follow..  9  86..........LLEEEQLSAMGQHGALLVDRLLEPGD--IIGFSWGRAVRSLVENLPQRSQS-RQVICVPIIGGPSGKLESRYHVNTLTYGAAARLKAESHLADFPALLDNPLIRNGIMQSTISSYWDSLDVALVGIGSPAIRDGANWHAFYGSEESDDLNARHVAGDTNMSEKTLSIEMAKLRQARYSIGIAMGEEKYSGILGALHGRYINCL................... 303
26 -10.6004GO1 Entity 1(prereleased)  ali follow..  13  84.LQHVRVIPGLADADVGGRLGIGAAHMLMSLLQPQQ--MLAIGFGEATMNTLQRLSGFI-----------QIRLVTLSGGVGSY--MTGIGQLNAACSVNIIPAPLRASSADIARTLKNEDVLLAAQAADVAIVGIGASQQDDATIIRSGYISQGEQLMIGR-VVTNIKIHNELIGLPLSALKTIPVRVGVAGGENKAEAIAAAMKGGYINAL................... 304
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.

                                                                                                                                                                                                   

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