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   TM0037;TM0037
 Protein Sequence Comparative Analysis   (PSCA)
 
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 FFAS03 results for 281918
current user: public


Query: TM0037 TM0037 281918 Purified-2001-08-24, from JCSG0113

Results of FFAS03 search in PDB0113
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIQMFINLLETIPSLGRHSFQVAFLSAQIAEKMNLDPNVSFLSGLIHDLGLILPYEGKTLLDEIDDTFVIVRDTPGKPLHLHSILGSFITDYVEKLKPISPIVLKHHFPASYLDKTEENLISNIVFISDQVSRYTMINLDVSPRDILIALEDMKSFFFPEVFEACREVLNTEFVQWQLENILAGYDVTDLLDHHVRNCPDCDKKDLIQIGKIVSFIVDTKSEFTTSHTWRVAVFSEKMAEKAGRNSEDLFIAGLYHDIGKISVSYKILEKPAKLSDEEYAIMKKHVYFSYLILLPYKDENWFLPAVRHHERLDGYGYPFRLKGEEMTLEDKIIQVADVFSALLEERPYRPANTVEKALSMVREEVKKKKLSQEAFELLESSLEDFDLSSIEVGREIRKEIRTFVNRVVEKFGDYVLLast
1 -53.8003tm8_A mol:protein length:328 Uncharacterized protein  ali model follow..  18  139...........................................................................................................................................................................................................NFIMSNAQALSAVIENTDKTISHHGVTVSTLSIALAQKLGITDPKLTLGALLHDYGHHHSPLNLNQPLDSMSPEDLALWKKHPIEGAQKVQDKKHQTVINIIGQHEETINGTG-PKGLREKDMDPLAVLVSSANAMDRLITFEGVPKAEAAKKLMI-----DHVGKHPLQHIQHLNDILKGL............................... 322
2 -20.2002o08_A mol:protein length:188 BH1327 protein  ali model follow..  17  2..............................................................................................................................................................................................................MNRGKALQLVKPHLTEHRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFRDKNELIREKLSQQDILFYGDE-HAPCGAYYVREIEDEDVLQAIRFHT-----TGRP------NMSLLEKIIFLADYIE------PNRQFPGVEKVRTQAKTD-----LNGAIISSLVNTITFLLKKNQPIYPDTLATYNQLLLEQK........ 188
3 -20.0002ogi_A mol:protein length:196 Hypothetical protein SAG1661  ali model follow..  17  11...............................................................................................................................................................................................................DRTELLSKVRHMMSDKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKPDLKKWGNNIWHGLVGIYKIQEIKDQDILAAIAKHT-----VGSA------QMSTLDKIVYVADYIE------HNRDFPGVEEARELAKVD-----LNKAVAYETARTVAFLASKAQPIYPKTIETYNAYIPYLD........ 196
4 -17.9003ccg_A mol:protein length:190 HD superfamily hydrolase  ali model follow..  19  2.............................................................................................................................................................................................................MWSYDKITDYLMNNLGEKRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKLPGEKIIETNEGYELGDEDIRNSHGLAGRILAKKIDDEDVLNAIEFH------TGRP------NMSLLEKIIYIADYIE------PGREFKGVDELRKAADED-----LNKALLMSFDNTIKFVIDKGGFLHHNTIEARNYLISR.......... 188
5 -15.1003sk9_A mol:protein length:265 Putative uncharacterized protein TTHB187  ali model follow..  17  20...............................................................................................................................................................................................................................LLAHMLDTAAVALAVAEDWGLPEEGAAALVGLHDLGKASFQAGWEEGKERVQRAGLPFGELHGVFTELFLRRLLKEKLAAALGAHHGFPANAEEKSRARRHLVLRVMALASFADWVASDPSLFPYGRDPRRGDYLKEALRLAQE................................................. 234
6 -13.6003s4l_A mol:protein length:244 CAS3 Metal dependent phosphohydrolase  ali model follow..  20  2................................................................................................................................................................................................................ILGEIMEVLAFKNQSLIDHVNDMVKYWERIKYRYLKTDEFMKILIKLHDIGKAS-------QRAIINDQEKLMGFRHELVSAYYTYHILLKKGALTVMLHHEPII....................................................................................................... 128
7 -13.6003m1t_A mol:protein length:275 Putative phosphohydrolase  ali model follow..  11  9...................................................................................................................QKVDELPRLPKAIAELLDVVNNEDSTVKAVSEKLSH------DPVLSARVLRLANSARFGCSREVGTIDDAVVRLGMQTLRTLVIA-----SAVVGAVPKVEGFDLADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSIGELLI-SAAVADGADRNLMEKELLGDNAEIGALLAQSWKFTPHLVKGIQFQNHPK--------SAEPYSKLAGMLAMAKQI............................................................................. 224
8 -13.5003i7a_A mol:protein length:281 Putative metal-dependent phosphohydrolase  ali model follow..  14  1.................................GMSNEHQLLVGLLKKL-KDDALILPTLPEVAMRVQEVVGRPDSS------------------LKQVAEII-----------GQDAAISARIIKVAN-------SALYSRGVPAENINSAVTRIGLTQIKSIATSVA------------------------------------MEQLFISTNEMVWEVMDEVWRTSIDVTAAACSLLQIYNLNYDTLTLAGLVHNIGALPVLTEAEAHPEMFTTIEHLVRKMQGPIGRAVLKSWDFAPEVMEVVERWADLP--------YLGDHVSYLDFIRAAAFY............................................................................. 235
9 -13.3002pq7_A mol:protein length:220 Predicted HD superfamily hydrolase  ali model follow..  17  10.........................................................................................................................................................................................................RIPHLREILNIVREAFKDYDAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDIKRPHEALTGVDHAESGAEYASGLLPTMGFDISFV-------AEVSKAIRSHRYSGGL--------TPTSLTGKILQDADRLDAIGAARVFTPLHSLQFSPRSSYSGNSRSSINHFHEKILKIRPETFWETARKMAEDRYSFVVEFVQRFLAEWGQ... 219
10 -13.3003djb_A mol:protein length:223 Hydrolase, HD family  ali model follow..  12  1........................................................................................................................................................................................................MTKQEKIEKTIVKHILEKDASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADEK-----LNESEEAGMKKVSDWLEELHVEEEESKHVL------------HIIANMSYKGGHGGKVESIEGKLVQDADRLDAL-------GAIGIARTFA-YGGAKGRLMYDPTIPPREVMTKDEYRKNNDPSLNHFYEKLLKLKDLMNTNAAKQE. 192
11 -13.1003dto_A mol:protein length:223 BH2835 protein  ali model follow..  13  1........................................................................................................................................................................................................MNEQAILQSAEVKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDK-----LVDDPETAKQQLIDWMEAAGVPSQKIDHTM------------DIINTISFKGGHGQSLATREAMVVQDADRLDALKGQPIYDPELPIRETMTVEEYRHGKSTAINHFYEKLFKLKDLMNETGKQLAKERHVFMEQFIERFLSEWNGDML 216
12 -13.0003mzo_A mol:protein length:216 Lin2634 protein  ali model follow..  12  14..............................................................................................................................................................................................................LENIYRCPGKFKYQEHSVAEHSYKVTSIAQFFGAVEEVNWRALYEKALNHDYSELFIGD--IKTPVKYATTELREMLSEVEMTKNFISREIPATFQPIYRHLLKEGKDS-----------TLEGKILAISDKVDLLYESFGEIQKGNPENIFVEIYSEALATIYEYREMASVKYFLKEILPDMLAEKGIEKTELPQLTTEITTKALR... 214
13 -12.9003gw7_A mol:protein length:239 Uncharacterized protein yedJ  ali model follow..  14  1........................................................................................................................................................................................................MDLQHWQAQFELKNHHQHQDAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSLAKNHPQRQRSSILAAEETRRLLREEFEQF----PAEKIEAVCHAIAAHSFSAQI--------APLTTEAKIVQDADRLEALGA-RVFAVSGALGVALFDGEDPFAQHRPLDDKRYALDHFQTKLLKLPQTMQTARGKQLAQHNAHFLVEFMAKL. 208
14 -12.8003p3q_A mol:protein length:283 MmoQ  ali model follow..  9  1................................................................................................................MLCDSLPTASRTAA---AILNLAQSEDVTAEALAQLIQT------DPALTGRILRFANAPAQ------------TRRPVASVIDAIDLVGLPAVRQFALSLSLIDAHREGRCEQKSLARAVALQSITAQASTAPKEAFTLGLLADVGRLALATAWKADGEALIALERERFADHDELTRMLLTDWGFPQVFIDALQLSQQ------DEIRDEGRTGRFARQLTLAQHIADHRLAEEPRRAALSPLLRAEARRCGLGDEDLARLLADPPADWLDR............................... 266
15 -12.3004dmb_A mol:protein length:204 HD domain-containing protein 2  ali model follow..  12  9........................................................................................................................................................................................................FSGHGARSLLQFLRLVGQLKRESVSDHMYRMAVMAMVIKDD-RLNKDRCVRLALVHDMAECIVGD--IAPADNIPKEEKHRREEEAM--KQITQLLPEDLRKELYELWEEYETQS-----------SAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSELEAERSTNIAAAASE..................... 201
16 -12.3003ljx_A mol:protein length:288 MmoQ Response regulator  ali model follow..  9  10...................................................................................................................MLCDSLPTASRTAAAILNLAQREDVTAEALAQLIQT------DPALTGRILRFANAPAQ------------TRRPVASVIDAIDLVGLPAVRQFALSLSLIDAHREGRCEQKSLARAVALQSITAQASTAPKEAFTLGLLADVGRLALATAWKADGEALIALERERFADHDELTRMLLTDWGFPQVFIDALQLSQQ------DEIRDEGRTGRFARQLALAQHI............................................................................. 229
17 -12.2002pjq_A mol:protein length:231 Uncharacterized protein lp_2664  ali model follow..  14  19...................................................................................................................................................................................................................ALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVIDDK-----LMANPAKAHQDLIVQLNAQNVTADDQTAIF------------AIIDHMSFSKSFNGPQ-SLEGQVVQDADRLDAIGAARALYYSGHVGEKI---REHMTREQYRHQPGTAINHFYEKLFKLAALMNTDTAKALAAHRTAVMHEFVDQF. 213
18 -12.1001vqr_A mol:protein length:297 hypothetical protein Cj0248  ali model follow..  10  20...................................................................................................................EVLPPLPDT--VSKLRKYVSEANSNIETMKVAEIISS-----DPLMTAKLLQLANSPYY------------FTREITTINQVITLLGVGNIINIVMADSIRDNFKIDVSPKTCNEEATFIANWLNDEDKLSHLLVPCAMLLRLGIVIFSNFLLNKNENLALAENEFLGDHISFLGFLLHRWNFDDVLIESICFVRTPHAAR-------EKVKKSAYALAITDHL............................................................................. 241
19 -12.0003hc1_A mol:protein length:305 uncharacterized HDOD domain protein  ali model follow..  12  21...................................................................................................................SGVDELPTVPDIVLRIAGKLNDPDVAIDEVADLLLQ------DQVLTARVVHLANSPLY------------AARPISSIRDAVIYLGLDLLREAIFTCAIVDLFKTGKGPAHSLGVARIAKLIAERTGFNPVNVYVAGLLHDVGEVFI-TLVDEEKITFGQAEERLFGSHCEVGFALAKRWSLNEFICDTILYHHDIEAV-------PYKQAAIVAMVAFADEYCTLRR------GFEGHKPVDSVRTLLENHPSWGVIRRSLGGSDFDEKLIVAELDSSIVE.................. 294
20 -11.9003b57_A mol:protein length:209 Lin1889 protein  ali model follow..  17  14...................................................................................................................................................................................................................MHSHFENETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK-----LTTDEQEATKTLINWMETKEIPSELIKKII------------RIIQSVSFKKGKNTKALTIEEKIVQDADRLDAI--------------AIGIARTFTYGGAHNREIANTLQHFYDKLLLIKDQLNTETAKTIAKEKQKIMQDFIQAL. 195
21 -11.3003mem_A mol:protein length:457 Putative signal transduction protein  ali model follow..  7  179...................................................................................................................EDTLELPPLPETAQRIIHLRVNPNAVMGDLVDVVES------DPSLAAQVVSWASSSFYAAAGRVHSVHDAVSRVLGFDLVMNLAMGLALGRALKHPQDHPDGYVDYW--QQAIWQAQSAGILASMMPRGQGLAYLAGLLHNFGHLVLAQVFPPHFKLVCRSEHYLLGTREQIAAQLMENWGMPDEVTLAIRYQKNPA--------YDGPHNVYARLLWLGRQLLTERGVALGAGESATQAVYDELGLDREL----QEQFDELVRRKDSIMAMAGMMSQG..................... 456
22 -11.1002paq_A mol:protein length:201 5`-deoxynucleotidase YfbR  ali model follow..  17  28...........................................................................................................................................................................................................................RTENVSEHSLQVAMVAHALAAIKNVNAERIALLAMYHDASEVLTGD--LPTPVKYFNSQIAQEYKAIEAQQKLVDMVPEELRDIFAPLIDEH------------AYSDEEKSLVKQADALCAYLKCLEELAAGNNEFLLAKTRLEATLEARRSQEMDYFMEIF.................................. 184
23 -10.8002gz4_A mol:protein length:207 Hypothetical protein Atu1052  ali model follow..  15  30............................................................................................................................................................................................................EIADIAHGLARV-GDHAFTVAQHCLIVETIFCRMCPG---ATPDEMQMALLHDAPEYVIGD--MISPFKVVGGGYKTVEKRLE--AAVHLRF-----------------------GLPPHASRELKDRIKKADTVAAFFEATELAGF-----------STAEAQKFFGLPRGITRDMFDIIPLPSTEAQRLFIARFEAIETLRVTRTGGAV. 207
24 -10.7003kh1_A mol:protein length:200 Predicted metal-dependent phosphohydrolase  ali model follow..  14  4.......................................................................................................................................................................................................PFPESRLAAQMSFVVEIDKLKTENDAEHSWHIATMAFLLAEYADVQIGRVARMLLIHDIVEIDAGD--TFIHDEAGNEDKEERERKAA--ARLFGLLPPDQAAEYSALWQEYEARE-----------TADARFADALDRLQPLLHNFETEGG................................................................. 155
25 -10.7001xx7_A mol:protein length:184 oxetanocin-like protein  ali model follow..  18  28...........................................................................................................................................................................................................................NPESVADHSYRVAFITLLLAEELEIDVEKALKIAIIHDLGEAIITDLSAQKYLNKEEAEAKALKDVLPEYTELFEEYSKAL--------------------------TLEGQLVKIADKLDMIIQAYEYELS................................................................. 140
26 -10.6001yoy_A mol:protein length:175 hypothetical protein AF1432  ali model follow..  14  6..........................................................................................................................................................................................................IKPMDDVVKFIHEVGSLKLESVAEHSFRAAIIAFILALKSGEKACKAATAALFHDLHEART--------MDLHKIARRYVSCDEEGAREEQLSWMESK-----------------------PDFSDVEVYVSDADKLELAFQGVEYSQQ................................................................. 140
27 -10.3002cqz_A mol:protein length:177 177aa long hypothetical protein  ali model follow..  13  29...........................................................................................................................................................................................................................EPESIADHSFGVAFITLVLADVLRIDVEKALKMAIVHDLAEAIITD--IPLSAQEFVDKDKAEALVFKKVFPEFYEL------------YREYQ----------ECSSPEAQLVRIADKLDMILQAYQYELS................................................................. 141
28 -9.6302qgs_A mol:protein length:225 Protein SE1688  ali model follow..  9  4..........................................................................................................................................................................................................RMKIKKAYEYMKSFHQHDTTHDIAHVERVYNNACYIAKREN-DTLVIELSSLLHDTV----------------DSKLTDEILAYDQLKQFLSTLDLSSEISQQVLY---IKHMSYRAGKNNHVLSIDGEIVRDADRLDAIGAARTFQFSGHFGEPMKLSNEELHTSLVEELDNSAIKHFYEKLFKLKDLMHTPTAKKLAEERHQFMIQYLKQF. 208
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.

                                                                                                                                                                                                   

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