PSCA ffas

TM0035;TM0035	Protein Sequence Comparative Analysis (PSCA)

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FFAS03 results for 281916

current user: public

Query: TM0035 TM0035 281916 Purified-2001-08-24, from JCSG0113

FFAS03:
PDB
more ...
PSI-BLAST:
nr85s

Results of FFAS03 search in PDB0113
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 .
#	Score	Template	Links and tools	%id	First	`MESPRNGSSRSFGPISWQQPSDWQETPPLAFNSTGVFKGVGDGQTLNQGIGVFFIYDAGVEEALVYGLSQDASLVDQGETEWKGFKGRYYKFEGNNLSFNVQVFPLGMRDLAFWNFVAGEPADEDLKTLEKILSSIDLNDRFKFSRWNSQDGTLKIYQNGNHFEGSFGEKTLEGIVIENSIFGWWKKSDSTGSVGPSRFWDGAFSGKFVEGKLQLLFSSSEDPFYSLEGTTVTFENVSGKFESSTVEEVSVTESLLCRSVYENTPFATDTAFTPFDKRIVMWSATKPFENSHIFKWEWYDPDGNLKETVYYIVAPTIETGYDYYDSVWGWMATDRFGEDAFGEWKVVVYADGKKLDESSFKLVQEPEMKTIETETFKLNVPAYTYYQLSEGVHYFILDIANLIFAEAHYETEPLNGEVYKTPNYEVNFIETSMPDYQTGQNFIYWVVQFPEKDGQYLYMSFYAPEDDFKRLESLFERILNSVELK`	Last
1	-6.580	`2eay_A mol:protein length:233 Biotin [acetyl-CoA-carboxylase] ligase`	`ali model follow..`	19	1	`.............................................MFKNLIWLKEVDSTQERLKEWNVSYGTALVADRQTKGRGRLGRKWLSQEGGLYFSFLLNPKEFENLLQLPLVLGLSVSEALEEITEIPFSL---------KWPN-----DVYFQEKKVSGVLCELSKDKLIVGIGI................................................................................................................................................................................................................................................................................................................`	122
2	-5.890	`3lyd_A mol:protein length:161 Uncharacterized protein`	`ali model follow..`	14	19	`.............GFTVPIPETWQPDPTMGTQFAARPHTPPQGFTPNIIGTVRRAATGALHNQRTELDQRDYAERGRTETTVDGFPAYHYRHHGTITIAQMITLVEVSHPIQLTATCAGDQTADYWDTFRLMHADLTVQ..........................................................................................................................................................................................................................................................................................................................................................`	158
3	-5.680	`2dl5_A mol:protein length:78 KIAA0769 protein`	`ali model follow..`	19	18	`........................................................................................................................................................VVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGPEKY..............................................................................................................................................................................................................................................................................................`	66
4	-5.480	`2xb3_A mol:protein length:165 PSBP PROTEIN`	`ali model follow..`	14	1	`.........................................................................................................................................................................................................................................................................................................................GSSATSGLQAYVD-----SYDGYEFLYPRGWVQVQVEDPVDVIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPSESGRSSALIAA--TSQKADDKTYYILEYAVTLPGDGNTAQQRHN-----LSSIAVSRGKVYTLSVSAPEERWPKVEDQFKTIVSSFTV.`	164
5	-5.270	`1vsa_C mol:protein length:206 50S ribosomal protein L3`	`ali model follow..`	15	5	`.............................................LGVKVGMTRIFRDDRAVPVTVILAGPCPVVQRRTPEKDGYTA-------------VQLGFLPQNPKRVNRPLKGHFAKAGVEPVRILR-------EIRDFNPEGDTVTVEIFKPGERVDGTSKGRGFAGVMKRWNFHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNLEVVDVIPEENLLLVKGAVPGPNGGLVIVRETK......................................................................................................................................................................................................................................`	202
6	-5.260	`1yrz_A mol:protein length:528 xylan beta-1,4-xylosidase`	`ali model follow..`	15	5	`...........................................................IQNPILPGFHPDPSIVRVGDD---------YYIATSTFEWFPGVRIHHSRDLKHWRFVS--------SPLTRTSQLDMKGNMNSGGIWAPCDGTFYLIYTDVKQWHGAFKDAHNYLVTAQNIEGPWSDP-NSSGFDPSLFHD-------DDGRKWLVNMIWDYRKGNHPFAGIILQEYSEAEQKLVGPVKNIYKG----------------------------TDIQLTEGPHLYK----------KDGYYYLLVAEGGTEYEHAATL---------SQSIDGPYE---------------TDPSYPLVTSTGQPELALQKAGHSLVETQNGEWYLAH----LCGRPLKGKYCTLGRETAIQK---VNWTEDGWLRIEDGGNHPLREVTAPDLPEHPFEKEPELDDFDAPQLHHQWNTLRIPAD..`	344
7	-5.230	`1ayo_A mol:protein length:130 ALPHA-2-MACROGLOBULIN`	`ali model follow..`	13	34	`..............................................................................................................................................................................................................................................................................................................GSRPASNMAIVDVKMVSGFIPLKPTVKMLERSNVSRTEVSNNHVLIYLDKVTNETLTLTFTVLQDIPVRDLKPAIVKV--YDYYETDE...............................................................................................`	119
8	-5.060	`1vm9_A mol:protein length:111 Toluene-4-monooxygenase system protein C`	`ali model follow..`	16	18	`......................................................................................................................................TFETSDGTEVLIVNSEEHGVKAYQA-PHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINPDDAALAEYPVEVKGDDIYVSTKGILPN......................................................................................................................................................................................................................................................................`	107
9	-5.050	`1nkw_B mol:protein length:211 50S ribosomal protein L3`	`ali model follow..`	14	5	`.............................................LGTKIGMTQIWKNDRAIPVTVVLAGPCPIVQRKTAQTDGYEA-------------VQIGYAPKAERKVNKPMQGHFAKAGVAPTRILRE-------FRGFAPDGDSVNVDIFAEGEKIDGTSKGKGTQGVMKRWNFHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVVEIRAGENLILVKGAIPGANGGLVVLRSAA......................................................................................................................................................................................................................................`	202
10	-4.970	`1wnl_A mol:protein length:235 biotin--[acetyl-CoA-carboxylase] ligase`	`ali model follow..`	16	7	`...........................................SIIGRRVIYFQEITSTNEFAKTSYLEEGTVIVADKQTMGHGRLNRKWESPEGGLWLSIVLSPVPQKDLPKIVFLGA--------GVVETLKEFSIDGRIKWPN--------DVLVNYKKIAGVLVEGKGDKIVLGIGL................................................................................................................................................................................................................................................................................................................`	130

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.

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