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   TM0012;TM0012
 Protein Sequence Comparative Analysis   (PSCA)
 
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 FFAS03 results for 281893
current user: public


Query: TM0012 TM0012 281893 Purified-2001-08-29, from JCSG0113

Results of FFAS03 search in PDB0113
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKFPINSDQEVAVLVKSKEELFKELENFIEENGYEGKKDALIQVLHKAQELFGYLPADVLEYISDKLDVPLSKVYGVVTFYNFFSTKPKGKHQIKVCLGTACYVKGADRIFERFLEELKVNPDEPTSDGMFSVHGVRCLGACSMAPVVMVDEDDFYGRVTPDMVPQIISKYKREGLast
1 -87.8002fug_2 mol:protein length:181 NADH-quinone oxidoreductase chain 2  ali model follow..  27  1...............MGFFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTGKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAG. 160
2 -50.8002auv_A mol:protein length:85 potential NAD-reducing hydrogenase subunit  ali model follow..  49  1......................................................................................MVPKGKYPISVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVG-EKVYGNVTPGQVKKILAEY.... 85
3 -21.6001f37_A mol:protein length:110 FERREDOXIN [2FE-2S]  ali model follow..  29  3...........................................................................................FKHVFVCVQDSCAQRGSREVFQAFMEKI---QTDPQLFMTTVITPTGCMNACMMGPVVVVYPDGVYGQVKPEDVDEIVEKHLKGG 93
4 -7.7302w57_A mol:protein length:150 FERRIC UPTAKE REGULATION PROTEIN  ali model follow..  16  18.....................................PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFSVFELSTQHHHDHLVCLDCGEVIEFSDDVIEQRQKEIAAKYNVQLTNHSLYL-----YGKC................................. 133
5 -7.5601mzb_A mol:protein length:136 ferric uptake regulation protein  ali model follow..  18  19.....................................PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFAVFELADSGHHDHMVCVDTGEVIEFMDAEIEKRQKEIVRERGFELVDHNLVL-----YVRK................................. 134
6 -6.9202fug_9 mol:protein length:182 NADH-quinone oxidoreductase chain 9  ali model follow..  16  3............................................................LKALAQSLGITLKYLFSVTVPYHVLTRHPNGLEKCIGCSAAAC--AYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIGLCEEAPTGAIVLGYDFEMADYEYSDLVYGK..... 133
7 -6.8801wjk_A mol:protein length:100 C330018D20rik protein  ali model follow..  10  1............................................................................GSSGSSGNLSASNRALPVLTLFTKAPCPLDEAKEVLQPYKDRFILQEVDITLPENSTWYE--------DIPVFHLNGQFMMHRVNTSKLEKQLRKLSGPS 98
8 -6.7402xig_A mol:protein length:150 FERRIC UPTAKE REGULATION PROTEIN  ali model follow..  17  4...............LETLESILERLRMSIKKNGLKKQREEVVSVLYRSGTHLS--PEEITHSIRQK-NTSISSVYRILNFLRRYEIAAKEHHDHIICLHCGKIIEFADPEIENRQNEVVKKYQAKLISHDMKM-----FVWC................................. 142
9 -6.6402olj_A mol:protein length:263 Amino acid ABC transporter  ali model follow..  15  40.....................HIREGEVVVVIGPSGSGKSTFLRCLNLLEDDEGEIIIDGINLKAKDTNLNKVR--EVGMVFQRFNLFP--MTVLNNITLAPMKVRKAEAKAMELLDKVGLKDKAHAYPDSLS-QRVAIARALAMEPKIML--DEPTSALDPEMVGEVLSVMKQ.. 198
10 -6.6104ets_A mol:protein length:162 Ferric uptake regulation protein  ali model follow..  14  14...................DVLLERFKKILRQGGLKKQREVLLKTLYHSDTHYT--PESLYMEIKQALNVGIATVYRTLNLLKKYELANKPHHDHMICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQL-----YGVC................................. 150
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.

                                                                                                                                                                                                   

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