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   ZP_02066560.1;SP8524C
Protein Sequence Comparative Analysis   (PSCA)
 
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ZP_02066560.1    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 v3_1_0:1sacA00 v3_1_0:1sacA00 Unknown 171 360 .. 16 204 .] 70.4 1.1e-22
2 v3_1_0:1epwA03 v3_1_0:1epwA03 Unknown 117 331 .. 1 233 [] 61.2 7.3e-18
3 v3_1_0:2sli001 v3_1_0:2sli001 Unknown 245 332 .. 107 196 .] 58.8 2.0e-17
4 v3_1_0:1a8d001 v3_1_0:1a8d001 Unknown 98 331 .. 1 246 [] 51.4 1.3e-14
5 v3_1_0:1s0iA02 v3_1_0:1s0iA02 Unknown 226 334 .. 125 237 .] 45.7 1.1e-12
6 DUF1735 PF08522 FAMILY 80 137 .. 1 65 [] 41.7 2.9e-09
7 v3_1_0:1c4rG00 v3_1_0:1c4rG00 Unknown 246 319 .. 91 182 .] 12.6 .00025
8 v3_1_0:1dykA02 v3_1_0:1dykA02 Unknown 233 318 .. 73 175 .] 8.9 .00046
9 v3_1_0:1d2sA00 v3_1_0:1d2sA00 Unknown 233 318 .. 73 170 .] 10.7 .0017
10 0000.0002143 0000.0002143 Unknown 1 25 [. 1 26 [. 10.4 .015
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of v3_1_0:1sacA00...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


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