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   ZP_02063319.1;SP13221C
Protein Sequence Comparative Analysis   (PSCA)
 
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ZP_02063319.1    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 v3_1_0:1uadC00 v3_1_0:1uadC00 Unknown 45 144 .. 1 99 [] 45.6 3.0e-14
2 v3_1_0:1rwiA00 v3_1_0:1rwiA00 Unknown 105 461 .. 1 270 [] 43.6 2.4e-13
3 v3_1_0:1pjxA00 v3_1_0:1pjxA00 Unknown 165 464 .. 1 314 [] 36.5 9.5e-12
4 v3_1_0:1l0qA01 v3_1_0:1l0qA01 Unknown 183 464 .. 1 301 [] 35.4 5.1e-11
5 v3_1_0:1d3cA03 v3_1_0:1d3cA03 Unknown 49 122 .. 1 87 [] 34.2 6.5e-11
6 v3_1_0:1q7fB00 v3_1_0:1q7fB00 Unknown 142 465 .] 1 286 [] 32.4 1.0e-09
7 v3_1_0:1c5kA02 v3_1_0:1c5kA02 Unknown 171 335 .. 1 156 [. 25.5 5.9e-08
8 v3_1_0:1npeA00 v3_1_0:1npeA00 Unknown 185 461 .. 1 267 [] 19.8 1.1e-06
9 TIG PF01833 DOMAIN 53 139 .. 1 103 [] 32.8 1.3e-06
10 v3_1_0:1pbyB00 v3_1_0:1pbyB00 Unknown 272 333 .. 1 62 [. 18.1 1.2e-05
11 v3_1_0:1ijqA01 v3_1_0:1ijqA01 Unknown 185 463 .. 1 262 [] 17.4 2.5e-05
12 v3_1_0:1k32A02 v3_1_0:1k32A02 Unknown 176 341 .. 1 165 [. 17 .00005
13 v3_1_0:1k32A01 v3_1_0:1k32A01 Unknown 248 335 .. 1 88 [. 14.9 .00007
14 v3_1_0:1ttuA03 v3_1_0:1ttuA03 Unknown 51 116 .. 1 62 [. 14.3 .00023
15 v3_1_0:1v04A00 v3_1_0:1v04A00 Unknown 266 360 .. 171 271 .. 12.5 .00028
16 NHL PF01436 REPEAT 433 461 .. 1 30 [] 24.7 .00037
17 v3_1_0:1jmxB00 v3_1_0:1jmxB00 Unknown 266 354 .. 98 195 .. 11.4 .0012
18 v3_1_0:1cruA00 v3_1_0:1cruA00 Unknown 234 342 .. 1 129 [. 10.9 .0017
19 v3_1_0:1ri6A00 v3_1_0:1ri6A00 Unknown 135 372 .. 205 343 .] 10.1 .0023
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of v3_1_0:1uadC00...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


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