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   ZP_02030716.1;SP16962B
Protein Sequence Comparative Analysis   (PSCA)
 
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ZP_02030716.1    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 v3_1_0:1z8hA00 v3_1_0:1z8hA00 Unknown 43 254 .. 1 202 [] 90 1.1e-25
2 v3_1_0:1ivnA00 v3_1_0:1ivnA00 Unknown 46 252 .. 1 190 [] 91.6 1.2e-25
3 v3_1_0:1es9A00 v3_1_0:1es9A00 Unknown 8 252 .. 1 216 [] 82 2.6e-23
4 Lipase_GDSL PF00657 FAMILY 49 249 .. 1 370 [] 34.4 4.4e-07
5 v3_1_0:1esc000 v3_1_0:1esc000 Unknown 99 255 .. 61 306 .] 15.7 8.5e-05
6 v3_1_0:1k7cA00 v3_1_0:1k7cA00 Unknown 47 252 .. 1 211 [. 16.3 .0001
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of v3_1_0:1z8hA00...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


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