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   ZP_02030627.1;SP0437A
Protein Sequence Comparative Analysis   (PSCA)
 
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ZP_02030627.1    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 v3_1_0:1bhe000 v3_1_0:1bhe000 Unknown 16 247 .. 1 254 [. 106 3.4e-34
2 v3_1_0:1h80B00 v3_1_0:1h80B00 Unknown 6 238 .. 1 266 [. 100.6 1.2e-31
3 v3_1_0:1rmg000 v3_1_0:1rmg000 Unknown 5 247 .. 1 223 [. 88.1 5.1e-28
4 v3_1_0:1hg8A00 v3_1_0:1hg8A00 Unknown 34 247 .. 1 213 [. 83.2 4.1e-25
5 v3_1_0:1k5cA00 v3_1_0:1k5cA00 Unknown 35 247 .. 1 198 [. 74.4 4.7e-23
6 v3_1_0:1ru4A00 v3_1_0:1ru4A00 Unknown 9 239 .. 1 226 [. 11.3 .0009
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of v3_1_0:1bhe000...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


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