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   YP_095136.1;SP19086A
Protein Sequence Comparative Analysis   (PSCA)
 
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YP_095136.1    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 v3_1_0:1orvA02 v3_1_0:1orvA02 Unknown 69 399 .. 1 258 [] 32.8 3.0e-11
2 v3_1_0:1xfdA02 v3_1_0:1xfdA02 Unknown 69 398 .. 1 259 [] 31.8 5.0e-09
3 v3_1_0:1ju3A01 v3_1_0:1ju3A01 Unknown 90 395 .. 37 253 .] 27.8 1.2e-08
4 v3_1_0:1zi8A00 v3_1_0:1zi8A00 Unknown 69 395 .. 1 236 [] 26.4 7.3e-08
5 v3_1_0:1ufoA00 v3_1_0:1ufoA00 Unknown 76 395 .. 1 238 [] 26.2 8.2e-08
6 v3_1_0:1tqhA00 v3_1_0:1tqhA00 Unknown 85 394 .. 1 247 [] 25.9 1.1e-07
7 v3_1_0:1l7aA00 v3_1_0:1l7aA00 Unknown 125 395 .. 98 318 .] 20.6 2.9e-06
8 v3_1_0:1mtzA00 v3_1_0:1mtzA00 Unknown 107 396 .. 1 293 [] 16.8 1.7e-05
9 v3_1_0:1jfrA00 v3_1_0:1jfrA00 Unknown 48 400 .. 1 262 [] 16 1.7e-05
10 v3_1_0:1fj2A00 v3_1_0:1fj2A00 Unknown 121 395 .. 35 232 .] 16.4 3.6e-05
11 v3_1_0:1brt000 v3_1_0:1brt000 Unknown 124 394 .. 38 277 .] 16.4 6.3e-05
12 v3_1_0:1zoiA00 v3_1_0:1zoiA00 Unknown 124 394 .. 37 276 .] 15.9 9.6e-05
13 v3_1_0:1ys1X00 v3_1_0:1ys1X00 Unknown 124 397 .. 1 320 [] 14.2 .00018
14 v3_1_0:1ispA00 v3_1_0:1ispA00 Unknown 124 400 .. 18 181 .] 13.7 .0011
15 v3_1_0:1thtA00 v3_1_0:1thtA00 Unknown 88 361 .. 1 228 [. 10.5 .0013
16 v3_1_0:1auoA00 v3_1_0:1auoA00 Unknown 121 395 .. 26 218 .] 12.6 .0014
17 v3_1_0:1qgeD00 v3_1_0:1qgeD00 Unknown 124 363 .. 29 222 .] 10.7 .0018
18 v3_1_0:1imjA00 v3_1_0:1imjA00 Unknown 124 394 .. 47 210 .] 10.9 .002
19 v3_1_0:2b9vA01 v3_1_0:2b9vA01 Unknown 122 395 .. 88 315 .] 8.9 .0045
20 v3_1_0:1gklA00 v3_1_0:1gklA00 Unknown 102 335 .. 71 297 .] 8.2 .0052
21 v3_1_0:1b6g000 v3_1_0:1b6g000 Unknown 124 394 .. 62 310 .] 7.9 .0059
22 v3_1_0:1iupA00 v3_1_0:1iupA00 Unknown 120 394 .. 1 282 [] 7.8 .0075
23 v3_1_0:1c4xA00 v3_1_0:1c4xA00 Unknown 134 394 .. 56 285 .] 8.3 .0077
24 v3_1_0:1q0rA00 v3_1_0:1q0rA00 Unknown 134 396 .. 49 298 .] 8.7 .0085
25 v3_1_0:1wm1A00 v3_1_0:1wm1A00 Unknown 134 394 .. 61 317 .] 8 .015
26 v3_1_0:1j1iA00 v3_1_0:1j1iA00 Unknown 121 394 .. 1 296 [] 6.9 .026
27 v3_1_0:1m33A00 v3_1_0:1m33A00 Unknown 134 397 .. 37 258 .] 6.1 .033
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of v3_1_0:1orvA02...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


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