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   YP_001714229.1;SP2417A
Protein Sequence Comparative Analysis   (PSCA)
 
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YP_001714229.1    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 v3_1_0:1n11A00 v3_1_0:1n11A00 Unknown 35 235 .. 206 437 .] 170.1 1.8e-52
2 v3_1_0:1ixvA00 v3_1_0:1ixvA00 Unknown 2 234 .. 1 231 [] 156.1 9.1e-51
3 v3_1_0:1uohA00 v3_1_0:1uohA00 Unknown 1 231 [. 1 226 [] 157.3 2.1e-49
4 v3_1_0:2f8yB00 v3_1_0:2f8yB00 Unknown 35 236 .] 1 223 [] 163.6 2.6e-49
5 v3_1_0:1k1aA00 v3_1_0:1k1aA00 Unknown 35 236 .] 40 241 .] 163.5 9.9e-49
6 v3_1_0:1wdyA00 v3_1_0:1wdyA00 Unknown 35 236 .] 66 285 .] 161 8.4e-48
7 v3_1_0:1iknD00 v3_1_0:1iknD00 Unknown 34 235 .. 1 236 [] 160.7 1.7e-47
8 v3_1_0:1yyhB00 v3_1_0:1yyhB00 Unknown 39 236 .] 1 199 [] 159.3 2.0e-46
9 v3_1_0:1sw6A00 v3_1_0:1sw6A00 Unknown 28 222 .. 1 272 [] 146 6.9e-43
10 v3_1_0:2bkgA00 v3_1_0:2bkgA00 Unknown 28 185 .. 1 166 [] 114.5 3.3e-35
11 v3_1_0:1bd8000 v3_1_0:1bd8000 Unknown 40 185 .. 1 145 [. 114.5 4.7e-35
12 v3_1_0:1bi7B00 v3_1_0:1bi7B00 Unknown 96 234 .. 1 134 [] 109.7 2.5e-34
13 v3_1_0:1ycsB01 v3_1_0:1ycsB01 Unknown 114 236 .] 8 128 .] 91.1 1.4e-26
14 v3_1_0:1s70B01 v3_1_0:1s70B01 Unknown 131 234 .. 64 162 .] 82.3 9.7e-25
15 v3_1_0:1ympA00 v3_1_0:1ympA00 Unknown 127 232 .. 35 135 .] 82.3 2.3e-24
16 v3_1_0:1n0qB00 v3_1_0:1n0qB00 Unknown 139 236 .] 1 93 [] 78.3 2.9e-23
17 v3_1_0:1s70B02 v3_1_0:1s70B02 Unknown 124 235 .. 21 137 .] 75.9 4.2e-23
18 v3_1_0:1n0rA00 v3_1_0:1n0rA00 Unknown 133 236 .] 28 126 .] 78.7 1.4e-22
19 v3_1_0:1n0qB00 v3_1_0:1n0qB00 Unknown 40 132 .. 1 93 [] 71.4 3.4e-21
20 v3_1_0:1s70B01 v3_1_0:1s70B01 Unknown 35 130 .. 67 162 .] 66.2 6.9e-20
21 v3_1_0:1n0rA00 v3_1_0:1n0rA00 Unknown 35 132 .. 29 126 .] 67.2 3.0e-19
22 v3_1_0:1ympA00 v3_1_0:1ympA00 Unknown 35 125 .. 42 135 .] 60.2 8.5e-18
23 v3_1_0:1s70B02 v3_1_0:1s70B02 Unknown 35 123 .. 31 137 .] 55.8 5.3e-17
24 v3_1_0:1ycsB01 v3_1_0:1ycsB01 Unknown 32 113 .. 1 128 [] 56.3 2.4e-16
25 v3_1_0:2bkgA00 v3_1_0:2bkgA00 Unknown 187 231 .. 122 166 .] 32.3 6.2e-10
26 v3_1_0:1bi7B00 v3_1_0:1bi7B00 Unknown 35 95 .. 71 134 .] 30.4 2.2e-09
27 v3_1_0:1bd8000 v3_1_0:1bd8000 Unknown 187 234 .. 110 156 .] 30.4 2.8e-09
28 Ank PF00023 REPEAT 73 105 .. 1 33 [] 37.6 4.9e-08
29 Ank PF00023 REPEAT 172 209 .. 1 33 [] 29 1.9e-05
30 Ank PF00023 REPEAT 139 171 .. 1 33 [] 24.9 .00033
31 Ank PF00023 REPEAT 40 72 .. 1 33 [] 22.3 .0019
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of v3_1_0:1n11A00...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


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