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   YP_001299918.1;GS13848A
Protein Sequence Comparative Analysis   (PSCA)
 
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YP_001299918.1    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 v3_1_0:1qnrA00 v3_1_0:1qnrA00 Unknown 34 326 .. 1 344 [] 31.3 7.8e-10
2 v3_1_0:1uuqA00 v3_1_0:1uuqA00 Unknown 26 212 .. 1 231 [. 16.2 .00003
3 v3_1_0:1bhgA03 v3_1_0:1bhgA03 Unknown 29 247 .. 1 187 [. 16.7 5.2e-05
4 v3_1_0:1bqcA00 v3_1_0:1bqcA00 Unknown 33 227 .. 1 176 [. 15.2 6.1e-05
5 v3_1_0:1jz7A03 v3_1_0:1jz7A03 Unknown 37 213 .. 1 153 [. 16.3 6.2e-05
6 v3_1_0:1eceA00 v3_1_0:1eceA00 Unknown 33 352 .. 1 358 [] 16 9.3e-05
7 v3_1_0:1vjzA00 v3_1_0:1vjzA00 Unknown 122 240 .. 58 194 .. 14.7 .00012
8 v3_1_0:1ceo000 v3_1_0:1ceo000 Unknown 122 371 .. 66 343 .] 13.2 .00024
9 v3_1_0:1cz1A00 v3_1_0:1cz1A00 Unknown 122 214 .. 105 220 .. 11.4 .00072
10 v3_1_0:1tvnA00 v3_1_0:1tvnA00 Unknown 32 180 .. 1 130 [. 10.1 .0021
11 v3_1_0:1edg000 v3_1_0:1edg000 Unknown 121 226 .. 97 234 .. 9.4 .0022
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of v3_1_0:1qnrA00...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


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