LOADING...
   TM1526;TM1526
Protein Sequence Comparative Analysis   (PSCA)
 
  Back to Target List
 
TM1526    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 Rubrerythrin PF02915 DOMAIN 5 141 .. 1 147 [] 151.8 2.0e-42
2 v3_1_0:1vjxA00 v3_1_0:1vjxA00 Unknown 1 145 [] 1 157 [] 120.8 4.5e-33
3 v3_1_0:1lkoA01 v3_1_0:1lkoA01 Unknown 2 118 .. 1 146 [] 15.2 .00031
4 v3_1_0:1nfvA00 v3_1_0:1nfvA00 Unknown 2 142 .. 1 179 [] 8.4 .023
5 v3_1_0:1jc4A00 v3_1_0:1jc4A00 Unknown 1 55 [. 94 148 .] 7.5 .045
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of Rubrerythrin...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


Contact Webmaster JCSG Menu