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   TM1394;TM1394
Protein Sequence Comparative Analysis   (PSCA)
 
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TM1394    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 HSP33 PF01430 FAMILY 1 274 [. 1 296 [] 300.4 3.7e-87
2 v3_1_0:1vzyA01 v3_1_0:1vzyA01 Unknown 1 236 [. 3 234 .] 206.4 2.7e-59
3 v3_1_0:1hw7A01 v3_1_0:1hw7A01 Unknown 1 177 [. 1 178 [] 152 1.8e-42
4 v3_1_0:1xjhA00 v3_1_0:1xjhA00 Unknown 225 282 .. 1 62 [] 56.9 3.2e-15
5 v3_1_0:1vzyA02 v3_1_0:1vzyA02 Unknown 231 282 .. 1 57 [] 52.1 6.3e-14
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of HSP33...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


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