LOADING...
   TM1158;TM1158
Protein Sequence Comparative Analysis   (PSCA)
 
  Back to Target List
 
TM1158    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 v3_1_0:1o1yA00 v3_1_0:1o1yA00 Unknown 1 227 [] 1 239 [] 212.7 2.1e-63
2 v3_1_0:1gpmA01 v3_1_0:1gpmA01 Unknown 3 193 .. 1 198 [] 109.5 1.5e-34
3 v3_1_0:1qdlB00 v3_1_0:1qdlB00 Unknown 1 185 [. 1 195 [] 114.9 2.9e-33
4 v3_1_0:1i7qB00 v3_1_0:1i7qB00 Unknown 1 185 [. 1 193 [] 105.7 1.5e-30
5 v3_1_0:1a9xB02 v3_1_0:1a9xB02 Unknown 43 193 .. 79 228 .] 86.5 1.8e-26
6 v3_1_0:1ka9H00 v3_1_0:1ka9H00 Unknown 1 195 [. 1 200 [] 84.4 6.5e-26
7 v3_1_0:1q7rA00 v3_1_0:1q7rA00 Unknown 1 198 [. 1 202 [] 66.4 4.3e-21
8 v3_1_0:1jvnA01 v3_1_0:1jvnA01 Unknown 1 191 [. 1 240 [] 54.3 1.2e-18
9 v3_1_0:1vcnA02 v3_1_0:1vcnA02 Unknown 43 195 .. 57 254 .] 50.9 1.1e-14
10 v3_1_0:1l9xA00 v3_1_0:1l9xA00 Unknown 37 182 .. 51 288 .] 41.6 5.3e-13
11 GATase PF00117 DOMAIN 10 192 .. 1 268 [] 40.8 5.4e-09
12 v3_1_0:1oi4A00 v3_1_0:1oi4A00 Unknown 3 97 .. 1 134 [. 21.4 8.7e-07
13 v3_1_0:2ab0A00 v3_1_0:2ab0A00 Unknown 3 97 .. 1 116 [. 7 .031
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of v3_1_0:1o1yA00...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


Contact Webmaster JCSG Menu