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   TM1040;TM1040
Protein Sequence Comparative Analysis   (PSCA)
 
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TM1040    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 v3_1_0:1uu1A02 v3_1_0:1uu1A02 Unknown 44 246 .. 1 203 [] 170.5 6.4e-51
2 v3_1_0:1lc5A02 v3_1_0:1lc5A02 Unknown 33 247 .. 1 225 [] 153.8 1.1e-47
3 v3_1_0:1fg7A01 v3_1_0:1fg7A01 Unknown 52 246 .. 1 205 [] 142 9.4e-43
4 v3_1_0:1d2fA02 v3_1_0:1d2fA02 Unknown 33 248 .. 1 243 [] 131.9 1.7e-41
5 v3_1_0:1uu1B01 v3_1_0:1uu1B01 Unknown 200 335 .] 1 132 [] 143.3 3.0e-41
6 Aminotran_1_2 PF00155 DOMAIN 19 331 .. 1 413 [] 144.6 3.0e-40
7 v3_1_0:1bw0A02 v3_1_0:1bw0A02 Unknown 31 248 .. 1 254 [] 132.4 5.6e-40
8 v3_1_0:1ars002 v3_1_0:1ars002 Unknown 33 266 .. 1 271 [] 131.8 7.3e-40
9 v3_1_0:1yizA02 v3_1_0:1yizA02 Unknown 32 254 .. 1 257 [] 137.4 8.6e-40
10 v3_1_0:1m7yA02 v3_1_0:1m7yA02 Unknown 33 247 .. 1 257 [] 137.9 9.2e-40
11 v3_1_0:1xi9A02 v3_1_0:1xi9A02 Unknown 37 249 .. 1 242 [] 134.4 7.9e-39
12 v3_1_0:1c7nA02 v3_1_0:1c7nA02 Unknown 53 248 .. 1 225 [] 120.2 9.6e-37
13 v3_1_0:1uu2B01 v3_1_0:1uu2B01 Unknown 215 335 .] 1 118 [] 114.9 9.0e-35
14 v3_1_0:1lk9A02 v3_1_0:1lk9A02 Unknown 57 258 .. 1 210 [] 115.6 3.2e-34
15 v3_1_0:1fg7A02 v3_1_0:1fg7A02 Unknown 200 330 .. 1 129 [] 107.8 9.9e-34
16 v3_1_0:1gd9A02 v3_1_0:1gd9A02 Unknown 52 247 .. 1 223 [] 114.5 1.4e-33
17 v3_1_0:1ajsB02 v3_1_0:1ajsB02 Unknown 34 266 .. 1 279 [] 85.5 9.8e-26
18 v3_1_0:1ukjA01 v3_1_0:1ukjA01 Unknown 2 251 .. 1 255 [] 78.6 4.5e-25
19 v3_1_0:1cs1A01 v3_1_0:1cs1A01 Unknown 4 250 .. 1 247 [] 68.4 8.9e-21
20 v3_1_0:1lc5A01 v3_1_0:1lc5A01 Unknown 223 334 .. 1 132 [] 66.9 1.4e-18
21 v3_1_0:1cl1A01 v3_1_0:1cl1A01 Unknown 27 234 .. 1 258 [] 41.9 2.7e-13
22 v3_1_0:1b9hA01 v3_1_0:1b9hA01 Unknown 34 288 .. 1 234 [] 43.9 9.4e-13
23 v3_1_0:1mdoA01 v3_1_0:1mdoA01 Unknown 14 276 .. 1 252 [] 38.8 3.7e-12
24 v3_1_0:1xi9B01 v3_1_0:1xi9B01 Unknown 189 283 .. 1 93 [. 38.8 7.7e-12
25 v3_1_0:1jg8A01 v3_1_0:1jg8A01 Unknown 17 247 .. 1 250 [] 35.9 4.1e-11
26 v3_1_0:1p3wA02 v3_1_0:1p3wA02 Unknown 34 249 .. 1 247 [] 30.2 2.9e-10
27 v3_1_0:1svvA01 v3_1_0:1svvA01 Unknown 7 248 .. 1 264 [] 32.5 4.2e-10
28 v3_1_0:5bj4A01 v3_1_0:5bj4A01 Unknown 179 286 .. 1 106 [. 33.4 1.5e-09
29 v3_1_0:1c7nA01 v3_1_0:1c7nA01 Unknown 193 283 .. 1 101 [. 26.2 7.4e-08
30 v3_1_0:1fc4A01 v3_1_0:1fc4A01 Unknown 141 254 .. 120 238 .] 25 7.6e-08
31 v3_1_0:1jf9A02 v3_1_0:1jf9A02 Unknown 40 233 .. 1 260 [] 27 1.0e-07
32 v3_1_0:1bs0A02 v3_1_0:1bs0A02 Unknown 29 249 .. 1 228 [] 25.9 1.4e-07
33 v3_1_0:1c4kA02 v3_1_0:1c4kA02 Unknown 141 259 .. 177 313 .] 23.1 2.0e-07
34 v3_1_0:1qgnG01 v3_1_0:1qgnG01 Unknown 12 234 .. 1 259 [] 19.7 7.8e-07
35 v3_1_0:1bw0B01 v3_1_0:1bw0B01 Unknown 202 281 .. 1 72 [. 21.5 3.5e-06
36 v3_1_0:1m7yA01 v3_1_0:1m7yA01 Unknown 190 307 .. 1 135 [. 21.3 .00001
37 v3_1_0:1d2fB01 v3_1_0:1d2fB01 Unknown 208 281 .. 1 77 [. 17.1 .00017
38 v3_1_0:1vq8P01 v3_1_0:1vq8P01 Unknown 120 175 .. 1 56 [] 13.5 .0014
39 v3_1_0:2huiA02 v3_1_0:2huiA02 Unknown 34 271 .. 1 249 [] 10.8 .0031
40 v3_1_0:1iugA02 v3_1_0:1iugA02 Unknown 140 271 .. 111 237 .] 10.1 .0059
41 v3_1_0:1wh5A00 v3_1_0:1wh5A00 Unknown 234 287 .. 1 54 [. 10.5 .0095
42 v3_1_0:1bs0A01 v3_1_0:1bs0A01 Unknown 216 334 .. 1 132 [] 8.9 .036
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of v3_1_0:1uu1A02...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


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