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   TM0828;TM0828
Protein Sequence Comparative Analysis   (PSCA)
 
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TM0828    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 v3_1_0:1tyyB00 v3_1_0:1tyyB00 Unknown 1 318 [. 1 315 [] 114.9 1.7e-34
2 v3_1_0:1v1aA00 v3_1_0:1v1aA00 Unknown 1 318 [. 1 309 [] 105.5 8.1e-34
3 v3_1_0:2afbB00 v3_1_0:2afbB00 Unknown 2 319 .] 1 351 [] 97.8 2.2e-31
4 v3_1_0:1rkd000 v3_1_0:1rkd000 Unknown 1 314 [. 1 309 [] 100.3 2.7e-29
5 v3_1_0:2absA01 v3_1_0:2absA01 Unknown 27 296 .. 1 284 [] 83 6.7e-23
6 v3_1_0:1vk4A00 v3_1_0:1vk4A00 Unknown 8 312 .. 1 298 [] 67.7 1.8e-20
7 v3_1_0:1bx4A01 v3_1_0:1bx4A01 Unknown 8 307 .. 1 282 [] 64.8 8.6e-20
8 v3_1_0:2i5bA00 v3_1_0:2i5bA00 Unknown 37 298 .. 1 271 [] 34.4 1.8e-10
9 PfkB PF00294 FAMILY 5 306 .. 1 326 [] 26.3 4.0e-08
10 v3_1_0:1lhpA00 v3_1_0:1lhpA00 Unknown 201 318 .. 158 312 .] 18.5 2.9e-06
11 v3_1_0:1vi9A00 v3_1_0:1vi9A00 Unknown 200 318 .. 155 299 .] 12.3 .00061
12 v3_1_0:1k7cA00 v3_1_0:1k7cA00 Unknown 202 293 .. 142 233 .] 8.3 .02
13 v3_1_0:1ub0A00 v3_1_0:1ub0A00 Unknown 200 310 .. 144 258 .] 8.4 .024
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of v3_1_0:1tyyB00...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


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