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   TM0312;TM0312
Protein Sequence Comparative Analysis   (PSCA)
 
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TM0312    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 v3_1_0:1h6dA01 v3_1_0:1h6dA01 Unknown 6 164 .. 1 170 [] 141.3 5.3e-40
2 v3_1_0:1h6dA02 v3_1_0:1h6dA02 Unknown 133 325 .. 1 190 [] 114.8 1.4e-34
3 v3_1_0:1lc0A01 v3_1_0:1lc0A01 Unknown 4 151 .. 1 143 [] 117.7 8.5e-34
4 v3_1_0:1ydwA01 v3_1_0:1ydwA01 Unknown 1 132 [. 1 133 [] 109.3 2.5e-32
5 GFO_IDH_MocA PF01408 FAMILY 7 128 .. 1 148 [] 107.2 5.4e-29
6 v3_1_0:1xeaA01 v3_1_0:1xeaA01 Unknown 5 127 .. 1 120 [] 95 1.7e-26
7 v3_1_0:1ff9A01 v3_1_0:1ff9A01 Unknown 4 156 .. 1 172 [] 60.9 4.8e-18
8 v3_1_0:1f06A01 v3_1_0:1f06A01 Unknown 4 177 .. 1 168 [] 43.1 3.6e-13
9 v3_1_0:2czcA01 v3_1_0:2czcA01 Unknown 5 106 .. 1 172 [] 25.9 1.6e-07
10 DapB_N PF01113 DOMAIN 7 130 .. 1 130 [] -22.1 .0029
11 v3_1_0:1gpjA02 v3_1_0:1gpjA02 Unknown 4 98 .. 1 118 [. 7.3 .021
12 Semialdhyde_dh PF01118 DOMAIN 8 116 .. 1 154 [] -21 .037
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of v3_1_0:1h6dA01...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


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