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   TM0231;TM0231
Protein Sequence Comparative Analysis   (PSCA)
 
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TM0231    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 v3_1_0:1j6uA02 v3_1_0:1j6uA02 Unknown 89 297 .. 1 209 [] 160.3 5.1e-46
2 v3_1_0:1gqyB02 v3_1_0:1gqyB02 Unknown 91 297 .. 1 217 [] 137.9 4.1e-41
3 v3_1_0:4uagA02 v3_1_0:4uagA02 Unknown 88 296 .. 1 206 [] 121.4 5.0e-37
4 v3_1_0:1j6uA03 v3_1_0:1j6uA03 Unknown 298 457 .] 1 160 [] 121.3 1.8e-36
5 v3_1_0:1p3dA03 v3_1_0:1p3dA03 Unknown 298 444 .. 1 152 [] 114.3 5.0e-33
6 v3_1_0:1gg4A02 v3_1_0:1gg4A02 Unknown 81 295 .. 1 231 [] 109.8 2.9e-32
7 v3_1_0:1e8cA02 v3_1_0:1e8cA02 Unknown 98 300 .. 1 238 [] 107.3 4.5e-31
8 v3_1_0:1w78A01 v3_1_0:1w78A01 Unknown 53 297 .. 1 287 [] 96 9.8e-30
9 v3_1_0:1o5zA01 v3_1_0:1o5zA01 Unknown 59 297 .. 1 305 [] 90.2 5.3e-28
10 v3_1_0:1p3dA01 v3_1_0:1p3dA01 Unknown 1 88 [. 1 88 [] 93 1.2e-26
11 v3_1_0:1j6uA01 v3_1_0:1j6uA01 Unknown 2 88 .. 1 87 [] 93.5 5.1e-26
12 Mur_ligase PF01225 DOMAIN 2 101 .. 1 106 [] 95.4 2.0e-25
13 v3_1_0:1e8cB03 v3_1_0:1e8cB03 Unknown 300 447 .. 1 142 [] 71.7 3.2e-21
14 Mur_ligase_C PF02875 DOMAIN 297 386 .. 1 101 [] 77.1 6.5e-20
15 Mur_ligase_M PF08245 DOMAIN 105 277 .. 1 229 [] 60.9 4.8e-15
16 v3_1_0:4uagA01 v3_1_0:4uagA01 Unknown 2 87 .. 7 92 .] 23.6 4.6e-07
17 v3_1_0:1o5zA02 v3_1_0:1o5zA02 Unknown 299 450 .. 1 137 [] 15.2 2.4e-05
18 v3_1_0:1w78A02 v3_1_0:1w78A02 Unknown 299 345 .. 1 43 [. 11.3 .0012
19 v3_1_0:1hyhA01 v3_1_0:1hyhA01 Unknown 1 136 [. 1 148 [] 9.7 .014
20 v3_1_0:1mfzA01 v3_1_0:1mfzA01 Unknown 1 34 [. 1 33 [. 8.4 .017
21 v3_1_0:1txgA01 v3_1_0:1txgA01 Unknown 1 52 [. 1 52 [. 9.5 .017
22 v3_1_0:1i36A01 v3_1_0:1i36A01 Unknown 1 64 [. 1 61 [. 7.4 .02
23 v3_1_0:1ks9A01 v3_1_0:1ks9A01 Unknown 1 46 [. 1 44 [. 8.2 .021
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of v3_1_0:1j6uA02...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


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