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   NP_809341.1;GE2184A
Protein Sequence Comparative Analysis   (PSCA)
 
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NP_809341.1    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 v3_1_0:1mdbA02 v3_1_0:1mdbA02 Unknown 83 260 .. 1 174 [] 58.1 1.3e-17
2 v3_1_0:1t5hX02 v3_1_0:1t5hX02 Unknown 83 254 .. 1 147 [] 47.6 4.8e-13
3 v3_1_0:1lci002 v3_1_0:1lci002 Unknown 100 252 .. 1 142 [] 39.9 3.5e-12
4 v3_1_0:1amuA02 v3_1_0:1amuA02 Unknown 112 276 .. 1 140 [] 22.7 2.5e-07
5 AMP-binding PF00501 FAMILY 14 360 .. 1 378 [] -38.9 1.1e-05
6 v3_1_0:1t5hX04 v3_1_0:1t5hX04 Unknown 330 403 .. 1 103 [] 17.5 .0001
7 v3_1_0:1mdbA04 v3_1_0:1mdbA04 Unknown 330 354 .. 1 25 [. 14.9 .00072
8 v3_1_0:1lci004 v3_1_0:1lci004 Unknown 332 415 .. 1 93 [. 11.7 .0077
9 v3_1_0:1mdbA01 v3_1_0:1mdbA01 Unknown 85 115 .. 128 158 .] 8.9 .014
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of v3_1_0:1mdbA02...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


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