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   NP_251743.1;SP16046A
Protein Sequence Comparative Analysis   (PSCA)
 
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NP_251743.1    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 v3_1_0:1b6g000 v3_1_0:1b6g000 Unknown 19 333 .. 1 310 [] 206.1 3.2e-65
2 v3_1_0:1c4xA00 v3_1_0:1c4xA00 Unknown 34 332 .. 1 285 [] 196.5 1.0e-59
3 v3_1_0:1mtzA00 v3_1_0:1mtzA00 Unknown 36 335 .] 1 293 [] 193.9 1.3e-59
4 v3_1_0:1iupA00 v3_1_0:1iupA00 Unknown 36 333 .. 1 282 [] 186.9 1.5e-58
5 v3_1_0:1ehyA00 v3_1_0:1ehyA00 Unknown 30 332 .. 1 294 [] 198.9 2.7e-58
6 v3_1_0:1brt000 v3_1_0:1brt000 Unknown 38 333 .. 1 277 [] 186.7 6.7e-55
7 v3_1_0:1q0rA00 v3_1_0:1q0rA00 Unknown 38 335 .] 1 298 [] 182.7 4.2e-54
8 v3_1_0:1j1iA00 v3_1_0:1j1iA00 Unknown 23 333 .. 1 296 [] 182.2 5.9e-53
9 v3_1_0:1zoiA00 v3_1_0:1zoiA00 Unknown 52 333 .. 1 276 [] 175.6 8.9e-52
10 v3_1_0:1m33A00 v3_1_0:1m33A00 Unknown 51 333 .. 1 258 [] 158.4 3.5e-51
11 v3_1_0:1imjA00 v3_1_0:1imjA00 Unknown 36 335 .] 1 210 [] 170.5 1.6e-50
12 v3_1_0:1ys1X00 v3_1_0:1ys1X00 Unknown 56 335 .] 1 320 [] 167.2 5.6e-50
13 v3_1_0:1mj5A00 v3_1_0:1mj5A00 Unknown 34 333 .. 1 302 [] 170.4 8.9e-50
14 v3_1_0:1wm1A00 v3_1_0:1wm1A00 Unknown 26 329 .. 1 317 [] 165.7 2.4e-49
15 v3_1_0:1qgeD00 v3_1_0:1qgeD00 Unknown 59 269 .. 1 222 [] 142 1.6e-44
16 v3_1_0:1qlwA00 v3_1_0:1qlwA00 Unknown 5 333 .. 1 328 [] 147.1 1.8e-43
17 v3_1_0:1qj4A00 v3_1_0:1qj4A00 Unknown 64 332 .. 1 257 [] 135.5 3.4e-38
18 v3_1_0:1tqhA00 v3_1_0:1tqhA00 Unknown 45 333 .. 1 247 [] 126.1 5.5e-37
19 v3_1_0:1qo7A00 v3_1_0:1qo7A00 Unknown 45 333 .. 1 394 [] 132.1 1.8e-36
20 v3_1_0:1jfrA00 v3_1_0:1jfrA00 Unknown 16 332 .. 1 262 [] 114.2 2.9e-36
21 v3_1_0:1ispA00 v3_1_0:1ispA00 Unknown 64 333 .. 1 181 [] 122.1 8.5e-34
22 v3_1_0:1fj2A00 v3_1_0:1fj2A00 Unknown 44 333 .. 1 232 [] 103.6 3.1e-31
23 v3_1_0:1k8qA00 v3_1_0:1k8qA00 Unknown 29 334 .. 1 377 [] 100.7 2.1e-30
24 v3_1_0:1ufoA00 v3_1_0:1ufoA00 Unknown 45 334 .. 1 238 [] 102.3 3.3e-30
25 Abhydrolase_1 PF00561 DOMAIN 94 329 .. 1 236 [] 92.3 1.6e-24
26 v3_1_0:1zi8A00 v3_1_0:1zi8A00 Unknown 38 332 .. 1 236 [] 73.3 1.3e-21
27 v3_1_0:1l7aA00 v3_1_0:1l7aA00 Unknown 38 329 .. 1 318 [] 65.6 1.4e-19
28 v3_1_0:1thtA00 v3_1_0:1thtA00 Unknown 35 315 .. 1 305 [] 60.7 5.0e-19
29 v3_1_0:1auoA00 v3_1_0:1auoA00 Unknown 53 332 .. 1 218 [] 65.8 7.5e-19
30 v3_1_0:1uxoA00 v3_1_0:1uxoA00 Unknown 63 328 .. 1 192 [] 60.9 3.8e-18
31 v3_1_0:1tca000 v3_1_0:1tca000 Unknown 36 165 .. 1 131 [. 49.8 3.2e-16
32 v3_1_0:1jjfA00 v3_1_0:1jjfA00 Unknown 4 314 .. 1 268 [] 45.8 3.4e-13
33 v3_1_0:1orvA02 v3_1_0:1orvA02 Unknown 38 313 .. 1 258 [] 38.3 4.7e-13
34 v3_1_0:1pjaA00 v3_1_0:1pjaA00 Unknown 65 165 .. 1 101 [. 40.1 2.1e-12
35 v3_1_0:1ju3A01 v3_1_0:1ju3A01 Unknown 33 269 .. 1 164 [. 39.5 3.4e-12
36 v3_1_0:1xktA01 v3_1_0:1xktA01 Unknown 49 332 .. 1 199 [] 36.6 8.1e-12
37 v3_1_0:1bu8A01 v3_1_0:1bu8A01 Unknown 63 169 .. 67 181 .. 31 4.4e-09
38 v3_1_0:1xfdA02 v3_1_0:1xfdA02 Unknown 38 269 .. 1 202 [. 32 4.6e-09
39 v3_1_0:1jmkC01 v3_1_0:1jmkC01 Unknown 50 332 .. 1 172 [] 27 6.7e-09
40 v3_1_0:1u4nA00 v3_1_0:1u4nA00 Unknown 31 332 .. 1 310 [] 26.3 8.1e-08
41 v3_1_0:1gklA00 v3_1_0:1gklA00 Unknown 1 314 [. 1 297 [] 18.5 4.1e-06
42 v3_1_0:1ku0B00 v3_1_0:1ku0B00 Unknown 60 148 .. 1 119 [. 15.8 5.1e-05
43 v3_1_0:2b9vA01 v3_1_0:2b9vA01 Unknown 3 269 .. 1 221 [. 11.2 .00093
44 v3_1_0:1qfmA01 v3_1_0:1qfmA01 Unknown 68 269 .. 115 288 .. 11.2 .0011
45 v3_1_0:1jkmA00 v3_1_0:1jkmA00 Unknown 1 168 [. 1 221 [. 8.5 .0039
46 v3_1_0:1tib000 v3_1_0:1tib000 Unknown 80 165 .. 82 169 .. 8.6 .0054
47 v3_1_0:1uwcA00 v3_1_0:1uwcA00 Unknown 80 166 .. 67 157 .. 7.5 .0069
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of v3_1_0:1b6g000...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


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