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   NM_002092;NM_002092
 Protein Sequence Comparative Analysis   (PSCA)
 
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NM_002092    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 v3_1_0:1rk8A00 v3_1_0:1rk8A00 Unknown 243 340 .. 1 100 [] 45 1.4e-13
2 v3_1_0:1p1tA00 v3_1_0:1p1tA00 Unknown 242 343 .. 1 104 [] 49.7 2.1e-13
3 v3_1_0:1fjeB02 v3_1_0:1fjeB02 Unknown 242 328 .. 1 84 [] 45.1 5.7e-13
4 v3_1_0:1sxl000 v3_1_0:1sxl000 Unknown 237 331 .. 1 97 [] 44.2 1.5e-12
5 RRM_1 PF00076 DOMAIN 252 320 .. 1 73 [] 51.4 3.4e-12
6 v3_1_0:1s79A00 v3_1_0:1s79A00 Unknown 239 330 .. 1 103 [] 45.1 6.0e-12
7 v3_1_0:1no8A00 v3_1_0:1no8A00 Unknown 250 326 .. 1 78 [] 41 6.5e-12
8 v3_1_0:1hl6C00 v3_1_0:1hl6C00 Unknown 251 340 .. 74 165 .] 41.5 1.4e-11
9 v3_1_0:2hzcA00 v3_1_0:2hzcA00 Unknown 244 324 .. 1 87 [] 41.5 1.6e-11
10 v3_1_0:1l3kA01 v3_1_0:1l3kA01 Unknown 237 326 .. 1 91 [] 40 3.3e-11
11 v3_1_0:1fjeB01 v3_1_0:1fjeB01 Unknown 247 327 .. 1 81 [] 39.1 5.0e-11
12 v3_1_0:1fxlA02 v3_1_0:1fxlA02 Unknown 252 326 .. 1 77 [] 40 5.6e-11
13 v3_1_0:1cvjG02 v3_1_0:1cvjG02 Unknown 239 341 .. 1 103 [] 40.3 7.0e-11
14 v3_1_0:1l3kA02 v3_1_0:1l3kA02 Unknown 248 324 .. 1 78 [] 38.3 8.0e-11
15 v3_1_0:1h2vZ00 v3_1_0:1h2vZ00 Unknown 243 333 .. 1 93 [] 34.8 1.8e-10
16 v3_1_0:1no8A00 v3_1_0:1no8A00 Unknown 150 229 .. 1 78 [] 36.1 2.0e-10
17 v3_1_0:1x5uA01 v3_1_0:1x5uA01 Unknown 248 325 .. 1 80 [] 38.3 2.2e-10
18 v3_1_0:2u2fA00 v3_1_0:2u2fA00 Unknown 249 330 .. 1 85 [] 36.2 2.6e-10
19 v3_1_0:1n54B00 v3_1_0:1n54B00 Unknown 241 334 .. 31 126 .] 36.8 2.7e-10
20 v3_1_0:1fjeB02 v3_1_0:1fjeB02 Unknown 142 231 .. 1 84 [] 35.7 3.4e-10
21 v3_1_0:1no8A00 v3_1_0:1no8A00 Unknown 401 476 .. 1 78 [] 34.1 8.1e-10
22 v3_1_0:1s79A00 v3_1_0:1s79A00 Unknown 139 229 .. 1 103 [] 36.8 1.2e-09
23 v3_1_0:1qm9A02 v3_1_0:1qm9A02 Unknown 239 328 .. 1 89 [] 33.1 1.3e-09
24 v3_1_0:1l3kA01 v3_1_0:1l3kA01 Unknown 137 229 .. 1 91 [] 34.5 1.3e-09
25 v3_1_0:1fjeB01 v3_1_0:1fjeB01 Unknown 147 230 .. 1 81 [] 34.3 1.3e-09
26 v3_1_0:1p1tA00 v3_1_0:1p1tA00 Unknown 142 232 .. 1 104 [] 35.6 1.6e-09
27 v3_1_0:2hzcA00 v3_1_0:2hzcA00 Unknown 144 224 .. 1 87 [] 34.3 1.9e-09
28 v3_1_0:1sxl000 v3_1_0:1sxl000 Unknown 137 231 .. 1 97 [] 33.6 1.9e-09
29 v3_1_0:1fjeB02 v3_1_0:1fjeB02 Unknown 393 478 .. 1 84 [] 33 2.2e-09
30 v3_1_0:1cvjA01 v3_1_0:1cvjA01 Unknown 240 324 .. 1 87 [] 34.4 2.7e-09
31 v3_1_0:1nu4A00 v3_1_0:1nu4A00 Unknown 242 328 .. 1 97 [] 31.2 3.3e-09
32 v3_1_0:1oiaB00 v3_1_0:1oiaB00 Unknown 241 328 .. 1 95 [] 34 3.6e-09
33 v3_1_0:1qm9A01 v3_1_0:1qm9A01 Unknown 247 346 .. 1 98 [] 30.2 4.5e-09
34 v3_1_0:1fxlA01 v3_1_0:1fxlA01 Unknown 252 320 .. 1 71 [] 33.1 9.7e-09
35 v3_1_0:2hzcA00 v3_1_0:2hzcA00 Unknown 395 471 .. 1 87 [] 31.7 1.1e-08
36 v3_1_0:1rk8A00 v3_1_0:1rk8A00 Unknown 143 231 .. 1 100 [] 28.4 1.7e-08
37 v3_1_0:2u1a000 v3_1_0:2u1a000 Unknown 237 326 .. 1 88 [] 30.6 1.9e-08
38 v3_1_0:1sjrA00 v3_1_0:1sjrA00 Unknown 243 339 .. 1 108 [] 30.2 2.1e-08
39 v3_1_0:1fxlA02 v3_1_0:1fxlA02 Unknown 152 229 .. 1 77 [] 30.2 3.8e-08
40 v3_1_0:1cvjG02 v3_1_0:1cvjG02 Unknown 139 231 .. 1 103 [] 30.4 3.9e-08
41 v3_1_0:1s79A00 v3_1_0:1s79A00 Unknown 390 473 .. 1 103 [] 30.8 4.9e-08
42 v3_1_0:1h2vZ00 v3_1_0:1h2vZ00 Unknown 143 231 .. 1 93 [] 26.6 5.8e-08
43 v3_1_0:1qm9A02 v3_1_0:1qm9A02 Unknown 139 231 .. 1 89 [] 26.9 9.0e-08
44 v3_1_0:1p1tA00 v3_1_0:1p1tA00 Unknown 393 473 .. 1 104 [] 29.4 9.0e-08
45 v3_1_0:1nu4A00 v3_1_0:1nu4A00 Unknown 142 231 .. 1 97 [] 25.5 1.8e-07
46 v3_1_0:1fjeB01 v3_1_0:1fjeB01 Unknown 398 471 .. 1 81 [] 26.6 2.3e-07
47 v3_1_0:1l3kA02 v3_1_0:1l3kA02 Unknown 148 224 .. 1 78 [] 25.9 3.8e-07
48 v3_1_0:1hl6C00 v3_1_0:1hl6C00 Unknown 125 243 .. 1 165 [] 25.4 5.3e-07
49 v3_1_0:1sxl000 v3_1_0:1sxl000 Unknown 388 471 .. 1 97 [] 25.1 5.6e-07
50 v3_1_0:1o0pA00 v3_1_0:1o0pA00 Unknown 249 325 .. 1 104 [] 25.5 5.9e-07
51 v3_1_0:1l3kA02 v3_1_0:1l3kA02 Unknown 399 471 .. 1 78 [] 25.2 6.1e-07
52 v3_1_0:1jmtA00 v3_1_0:1jmtA00 Unknown 238 325 .. 1 104 [] 24.2 7.4e-07
53 v3_1_0:1fxlA02 v3_1_0:1fxlA02 Unknown 403 476 .. 1 77 [] 25.2 1.0e-06
54 v3_1_0:1h2vZ00 v3_1_0:1h2vZ00 Unknown 394 471 .. 1 93 [] 22.5 1.1e-06
55 v3_1_0:1l3kA01 v3_1_0:1l3kA01 Unknown 388 471 .. 1 91 [] 24 1.4e-06
56 v3_1_0:1oiaB00 v3_1_0:1oiaB00 Unknown 141 231 .. 1 95 [] 24.4 1.7e-06
57 v3_1_0:1x5uA01 v3_1_0:1x5uA01 Unknown 148 228 .. 1 80 [] 24.6 1.8e-06
58 v3_1_0:1jmtA00 v3_1_0:1jmtA00 Unknown 121 228 .. 1 104 [] 22.8 2.0e-06
59 v3_1_0:1cvjA01 v3_1_0:1cvjA01 Unknown 140 224 .. 1 87 [] 24.2 2.2e-06
60 v3_1_0:1sjrA00 v3_1_0:1sjrA00 Unknown 394 473 .. 1 108 [] 22.4 3.6e-06
61 v3_1_0:1rk8A00 v3_1_0:1rk8A00 Unknown 394 473 .. 1 100 [] 20.7 4.0e-06
62 v3_1_0:1n54B00 v3_1_0:1n54B00 Unknown 139 231 .. 29 126 .] 22.2 4.1e-06
63 v3_1_0:1fxlA01 v3_1_0:1fxlA01 Unknown 403 470 .. 1 71 [] 23.6 4.7e-06
64 v3_1_0:1cvjG02 v3_1_0:1cvjG02 Unknown 390 471 .. 1 103 [] 22.7 5.7e-06
65 v3_1_0:1fxlA01 v3_1_0:1fxlA01 Unknown 152 223 .. 1 71 [] 23.1 6.2e-06
66 v3_1_0:2u2fA00 v3_1_0:2u2fA00 Unknown 149 231 .. 1 85 [] 21.3 6.4e-06
67 v3_1_0:1nu4A00 v3_1_0:1nu4A00 Unknown 393 473 .. 1 97 [] 19.8 9.3e-06
68 v3_1_0:1sjrA00 v3_1_0:1sjrA00 Unknown 143 226 .. 1 108 [] 20.5 1.2e-05
69 v3_1_0:1cvjA01 v3_1_0:1cvjA01 Unknown 391 471 .. 1 87 [] 21.6 1.2e-05
70 v3_1_0:1hl6C00 v3_1_0:1hl6C00 Unknown 403 473 .. 75 165 .] 20.6 1.2e-05
71 v3_1_0:1oiaB00 v3_1_0:1oiaB00 Unknown 392 473 .. 1 95 [] 21.3 1.3e-05
72 v3_1_0:2u1a000 v3_1_0:2u1a000 Unknown 388 478 .. 1 88 [] 20.7 1.4e-05
73 v3_1_0:1qm9A02 v3_1_0:1qm9A02 Unknown 390 478 .. 1 89 [] 19.3 1.7e-05
74 v3_1_0:1x5uA01 v3_1_0:1x5uA01 Unknown 399 471 .. 1 80 [] 20.8 2.1e-05
75 v3_1_0:3sxlA02 v3_1_0:3sxlA02 Unknown 245 298 .. 1 55 [] 21.3 2.6e-05
76 v3_1_0:2u2fA00 v3_1_0:2u2fA00 Unknown 400 480 .] 1 85 [] 18.6 3.9e-05
77 v3_1_0:2u1a000 v3_1_0:2u1a000 Unknown 137 229 .. 1 88 [] 19 4.4e-05
78 v3_1_0:1n54B00 v3_1_0:1n54B00 Unknown 403 471 .. 42 126 .] 17.7 8.2e-05
79 v3_1_0:1cvjH02 v3_1_0:1cvjH02 Unknown 239 304 .. 1 65 [] 20.1 8.5e-05
80 v3_1_0:1o0pA00 v3_1_0:1o0pA00 Unknown 156 233 .. 21 104 .] 17.8 9.3e-05
81 v3_1_0:1cvjH02 v3_1_0:1cvjH02 Unknown 390 453 .. 1 65 [] 18.9 .00018
82 v3_1_0:1qm9A01 v3_1_0:1qm9A01 Unknown 147 230 .. 1 98 [] 13.4 .00068
83 v3_1_0:1qm9A01 v3_1_0:1qm9A01 Unknown 398 457 .. 1 58 [. 13.3 .00068
84 v3_1_0:1whvA00 v3_1_0:1whvA00 Unknown 255 337 .. 21 100 .] 14.2 .00098
85 v3_1_0:1cvjH02 v3_1_0:1cvjH02 Unknown 139 207 .. 1 65 [] 14 .0041
86 RRM_1 PF00076 DOMAIN 403 470 .. 1 73 [] 17.8 .0044
87 RRM_1 PF00076 DOMAIN 152 223 .. 1 73 [] 17.5 .0047
88 v3_1_0:1jmtA00 v3_1_0:1jmtA00 Unknown 374 471 .. 1 104 [] 9.7 .015
89 v3_1_0:3sxlA02 v3_1_0:3sxlA02 Unknown 396 448 .. 1 55 [] 10.3 .036
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of v3_1_0:1rk8A00...

Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.

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