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   BC043071;BC043071
Protein Sequence Comparative Analysis   (PSCA)
 
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BC043071    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 v3_1_0:1o0pA00 v3_1_0:1o0pA00 Unknown 368 471 .] 1 104 [] 111.8 1.9e-31
2 v3_1_0:1hl6C00 v3_1_0:1hl6C00 Unknown 152 335 .. 1 165 [] 103.3 4.4e-29
3 RRM_1 PF00076 DOMAIN 261 331 .. 1 73 [] 82.8 1.2e-21
4 v3_1_0:2hzcA00 v3_1_0:2hzcA00 Unknown 143 229 .. 1 87 [] 72.6 1.5e-20
5 v3_1_0:1rk8A00 v3_1_0:1rk8A00 Unknown 252 336 .. 1 100 [] 64 2.0e-19
6 v3_1_0:1h2vZ00 v3_1_0:1h2vZ00 Unknown 252 335 .. 1 93 [] 63.7 2.3e-19
7 v3_1_0:2u2fA00 v3_1_0:2u2fA00 Unknown 258 342 .. 1 85 [] 66.4 3.2e-19
8 v3_1_0:1o0pA00 v3_1_0:1o0pA00 Unknown 245 338 .. 1 104 [] 68.5 3.7e-19
9 v3_1_0:1sxl000 v3_1_0:1sxl000 Unknown 246 342 .. 1 97 [] 66.1 5.6e-19
10 v3_1_0:1l3kA02 v3_1_0:1l3kA02 Unknown 257 335 .. 1 78 [] 63.9 2.1e-18
11 v3_1_0:2hzcA00 v3_1_0:2hzcA00 Unknown 253 335 .. 1 87 [] 63 9.1e-18
12 v3_1_0:1n54B00 v3_1_0:1n54B00 Unknown 241 345 .. 22 126 .] 62.4 1.2e-17
13 v3_1_0:1x5uA01 v3_1_0:1x5uA01 Unknown 257 336 .. 1 80 [] 63.7 1.4e-17
14 v3_1_0:1p1tA00 v3_1_0:1p1tA00 Unknown 251 335 .. 1 104 [] 64.4 1.8e-17
15 v3_1_0:1no8A00 v3_1_0:1no8A00 Unknown 259 335 .. 1 78 [] 58.2 4.4e-17
16 v3_1_0:1cvjA01 v3_1_0:1cvjA01 Unknown 249 335 .. 1 87 [] 61.1 6.1e-17
17 v3_1_0:1l3kA01 v3_1_0:1l3kA01 Unknown 255 335 .. 10 91 .] 59.1 9.8e-17
18 v3_1_0:1fxlA02 v3_1_0:1fxlA02 Unknown 261 335 .. 1 77 [] 59.5 1.4e-16
19 v3_1_0:1jmtA00 v3_1_0:1jmtA00 Unknown 230 336 .. 1 104 [] 56.8 1.6e-16
20 v3_1_0:1fjeB01 v3_1_0:1fjeB01 Unknown 256 338 .. 1 81 [] 57.2 2.5e-16
21 v3_1_0:1cvjG02 v3_1_0:1cvjG02 Unknown 255 335 .. 8 103 .] 58.5 6.1e-16
22 v3_1_0:1nu4A00 v3_1_0:1nu4A00 Unknown 251 336 .. 1 97 [] 52.1 1.5e-15
23 v3_1_0:1qm9A01 v3_1_0:1qm9A01 Unknown 256 338 .. 1 98 [] 50.2 3.1e-15
24 v3_1_0:1fxlA01 v3_1_0:1fxlA01 Unknown 261 330 .. 1 71 [] 56 3.1e-15
25 v3_1_0:1s79A00 v3_1_0:1s79A00 Unknown 248 335 .. 1 103 [] 57 3.4e-15
26 v3_1_0:1oiaB00 v3_1_0:1oiaB00 Unknown 250 336 .. 1 95 [] 53.6 1.1e-14
27 v3_1_0:2u1a000 v3_1_0:2u1a000 Unknown 246 335 .. 1 88 [] 50.8 2.6e-14
28 v3_1_0:1fjeB02 v3_1_0:1fjeB02 Unknown 251 335 .. 1 84 [] 48.4 5.9e-14
29 v3_1_0:1rk8A00 v3_1_0:1rk8A00 Unknown 142 240 .. 1 100 [] 43.3 4.6e-13
30 v3_1_0:1o0pA00 v3_1_0:1o0pA00 Unknown 135 230 .. 1 104 [] 45 1.7e-12
31 v3_1_0:1jmtA00 v3_1_0:1jmtA00 Unknown 371 461 .. 1 104 [] 42.4 2.9e-12
32 v3_1_0:1h2vZ00 v3_1_0:1h2vZ00 Unknown 142 238 .. 1 93 [] 40.1 4.2e-12
33 v3_1_0:1p1tA00 v3_1_0:1p1tA00 Unknown 141 248 .. 1 104 [] 44.7 5.1e-12
34 v3_1_0:1fjeB01 v3_1_0:1fjeB01 Unknown 146 232 .. 1 81 [] 41.6 9.1e-12
35 v3_1_0:1qm9A02 v3_1_0:1qm9A02 Unknown 259 336 .. 12 89 .] 40 1.1e-11
36 v3_1_0:1sxl000 v3_1_0:1sxl000 Unknown 136 234 .. 1 97 [] 40.2 2.2e-11
37 v3_1_0:1sjrA00 v3_1_0:1sjrA00 Unknown 255 358 .. 4 108 .] 40.1 3.0e-11
38 v3_1_0:1l3kA01 v3_1_0:1l3kA01 Unknown 136 231 .. 1 91 [] 39 6.2e-11
39 v3_1_0:2u1a000 v3_1_0:2u1a000 Unknown 136 231 .. 1 88 [] 38.9 7.4e-11
40 v3_1_0:1l3kA02 v3_1_0:1l3kA02 Unknown 147 229 .. 1 78 [] 38.3 8.1e-11
41 v3_1_0:1s79A00 v3_1_0:1s79A00 Unknown 138 246 .. 1 103 [] 40.1 1.4e-10
42 v3_1_0:1no8A00 v3_1_0:1no8A00 Unknown 149 231 .. 1 78 [] 35.3 3.3e-10
43 v3_1_0:1n54B00 v3_1_0:1n54B00 Unknown 72 239 .. 1 126 [] 36.4 3.6e-10
44 v3_1_0:1cvjG02 v3_1_0:1cvjG02 Unknown 138 246 .. 1 103 [] 37.7 3.8e-10
45 v3_1_0:2u2fA00 v3_1_0:2u2fA00 Unknown 148 234 .. 1 85 [] 35.6 3.9e-10
46 v3_1_0:1fjeB02 v3_1_0:1fjeB02 Unknown 141 233 .. 1 84 [] 35.5 4.1e-10
47 v3_1_0:3sxlA02 v3_1_0:3sxlA02 Unknown 254 307 .. 1 55 [] 37.3 7.2e-10
48 v3_1_0:1fxlA02 v3_1_0:1fxlA02 Unknown 151 231 .. 1 77 [] 35.9 8.9e-10
49 v3_1_0:1oiaB00 v3_1_0:1oiaB00 Unknown 140 237 .. 1 95 [] 35.8 1.1e-09
50 v3_1_0:1x5uA01 v3_1_0:1x5uA01 Unknown 147 230 .. 1 80 [] 35.6 1.3e-09
51 v3_1_0:1qm9A01 v3_1_0:1qm9A01 Unknown 146 243 .. 1 98 [] 31.4 1.9e-09
52 v3_1_0:1nu4A00 v3_1_0:1nu4A00 Unknown 141 231 .. 1 97 [] 31.6 2.4e-09
53 v3_1_0:2hzcA00 v3_1_0:2hzcA00 Unknown 396 460 .. 21 87 .] 33.6 3.2e-09
54 v3_1_0:1qm9A02 v3_1_0:1qm9A02 Unknown 138 233 .. 1 89 [] 31.8 3.2e-09
55 v3_1_0:1sjrA00 v3_1_0:1sjrA00 Unknown 142 228 .. 1 108 [] 32.2 5.4e-09
56 v3_1_0:1whvA00 v3_1_0:1whvA00 Unknown 244 335 .. 1 100 [] 32.5 6.2e-09
57 v3_1_0:1fxlA01 v3_1_0:1fxlA01 Unknown 151 225 .. 1 71 [] 33.6 6.7e-09
58 v3_1_0:1cvjH02 v3_1_0:1cvjH02 Unknown 248 314 .. 1 65 [] 33.7 1.6e-08
59 v3_1_0:1cvjA01 v3_1_0:1cvjA01 Unknown 139 229 .. 1 87 [] 31.2 2.2e-08
60 v3_1_0:1n54B00 v3_1_0:1n54B00 Unknown 396 468 .. 54 126 .] 29.3 3.9e-08
61 v3_1_0:1jmtA00 v3_1_0:1jmtA00 Unknown 122 228 .. 1 104 [] 28.3 4.4e-08
62 v3_1_0:1h2vZ00 v3_1_0:1h2vZ00 Unknown 396 469 .. 22 93 .] 27 4.6e-08
63 v3_1_0:1rk8A00 v3_1_0:1rk8A00 Unknown 396 468 .. 22 100 .] 26.6 5.9e-08
64 v3_1_0:1hl6C00 v3_1_0:1hl6C00 Unknown 396 468 .. 87 165 .] 27.8 1.1e-07
65 v3_1_0:1p1tA00 v3_1_0:1p1tA00 Unknown 396 468 .. 23 104 .] 29.1 1.1e-07
66 v3_1_0:1sxl000 v3_1_0:1sxl000 Unknown 396 467 .. 28 97 .] 27.4 1.2e-07
67 v3_1_0:1nu4A00 v3_1_0:1nu4A00 Unknown 396 471 .] 23 97 .] 25.3 2.0e-07
68 RRM_1 PF00076 DOMAIN 151 225 .. 1 73 [] 35.6 2.1e-07
69 v3_1_0:1qm9A01 v3_1_0:1qm9A01 Unknown 396 468 .. 19 98 .] 24.7 2.2e-07
70 v3_1_0:2u2fA00 v3_1_0:2u2fA00 Unknown 396 467 .. 16 85 .] 25.9 2.9e-07
71 v3_1_0:1s79A00 v3_1_0:1s79A00 Unknown 396 469 .. 26 103 .] 27.7 3.5e-07
72 v3_1_0:1l3kA01 v3_1_0:1l3kA01 Unknown 396 462 .. 28 91 .] 25.5 5.3e-07
73 v3_1_0:1fxlA02 v3_1_0:1fxlA02 Unknown 396 462 .. 13 77 .] 25.7 7.7e-07
74 v3_1_0:1cvjG02 v3_1_0:1cvjG02 Unknown 396 468 .. 26 103 .] 25.6 8.6e-07
75 v3_1_0:1qm9A02 v3_1_0:1qm9A02 Unknown 396 464 .. 26 89 .] 23.4 1.0e-06
76 v3_1_0:1oiaB00 v3_1_0:1oiaB00 Unknown 396 468 .. 24 95 .] 25.1 1.1e-06
77 v3_1_0:1sjrA00 v3_1_0:1sjrA00 Unknown 396 466 .. 22 108 .] 23.7 1.5e-06
78 v3_1_0:1x5uA01 v3_1_0:1x5uA01 Unknown 396 461 .. 17 80 .] 24.7 1.7e-06
79 v3_1_0:1fjeB02 v3_1_0:1fjeB02 Unknown 396 464 .. 23 84 .] 23.2 1.8e-06
80 v3_1_0:2u1a000 v3_1_0:2u1a000 Unknown 396 462 .. 28 88 .] 23.4 2.2e-06
81 v3_1_0:1fjeB01 v3_1_0:1fjeB01 Unknown 396 463 .. 18 81 .] 22.8 3.0e-06
82 v3_1_0:1no8A00 v3_1_0:1no8A00 Unknown 396 462 .. 15 78 .] 22 3.4e-06
83 v3_1_0:1cvjA01 v3_1_0:1cvjA01 Unknown 396 460 .. 25 87 .] 22.4 7.1e-06
84 v3_1_0:1l3kA02 v3_1_0:1l3kA02 Unknown 396 460 .. 17 78 .] 20.2 1.8e-05
85 v3_1_0:1fxlA01 v3_1_0:1fxlA01 Unknown 396 455 .. 13 71 .] 19.9 5.1e-05
86 v3_1_0:1cvjH02 v3_1_0:1cvjH02 Unknown 138 209 .. 1 65 [] 18.8 .00019
87 v3_1_0:3sxlA02 v3_1_0:3sxlA02 Unknown 144 203 .. 1 55 [] 17.2 .00038
88 v3_1_0:1whvA00 v3_1_0:1whvA00 Unknown 134 242 .. 1 100 [] 13.7 .0014
89 DUF1777 PF08648 FAMILY 1 154 [. 1 267 [] -67.2 .0093
90 RRM_1 PF00076 DOMAIN 396 456 .. 1 73 [] 6.9 .046
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of v3_1_0:1o0pA00...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


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