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   BC030493;WS20613E
Protein Sequence Comparative Analysis   (PSCA)
 
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BC030493    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 RRM_1 PF00076 DOMAIN 95 165 .. 1 73 [] 113.5 7.3e-31
2 v3_1_0:1rk8A00 v3_1_0:1rk8A00 Unknown 86 185 .. 1 100 [] 94.9 6.2e-29
3 v3_1_0:1h2vZ00 v3_1_0:1h2vZ00 Unknown 86 178 .. 1 93 [] 89.2 3.5e-27
4 v3_1_0:1sxl000 v3_1_0:1sxl000 Unknown 80 176 .. 1 97 [] 93 7.7e-27
5 v3_1_0:1l3kA01 v3_1_0:1l3kA01 Unknown 80 171 .. 1 91 [] 91.4 4.1e-26
6 v3_1_0:1cvjG02 v3_1_0:1cvjG02 Unknown 82 186 .. 1 103 [] 93.4 1.2e-25
7 v3_1_0:2u2fA00 v3_1_0:2u2fA00 Unknown 92 175 .. 1 85 [] 87.6 1.8e-25
8 v3_1_0:1nu4A00 v3_1_0:1nu4A00 Unknown 85 180 .. 1 97 [] 84.7 1.9e-25
9 v3_1_0:1n54B00 v3_1_0:1n54B00 Unknown 87 179 .. 1 126 [] 89.5 2.2e-25
10 v3_1_0:1jmtA00 v3_1_0:1jmtA00 Unknown 76 170 .. 11 104 .] 86.2 3.0e-25
11 v3_1_0:1p1tA00 v3_1_0:1p1tA00 Unknown 85 188 .. 1 104 [] 91.8 4.8e-25
12 v3_1_0:1hl6C00 v3_1_0:1hl6C00 Unknown 94 185 .. 74 165 .] 86.9 1.9e-24
13 v3_1_0:1cvjA01 v3_1_0:1cvjA01 Unknown 83 169 .. 1 87 [] 87.2 2.1e-24
14 v3_1_0:1no8A00 v3_1_0:1no8A00 Unknown 93 171 .. 1 78 [] 82.3 2.6e-24
15 v3_1_0:1fjeB01 v3_1_0:1fjeB01 Unknown 90 172 .. 1 81 [] 83.4 5.0e-24
16 v3_1_0:1qm9A01 v3_1_0:1qm9A01 Unknown 90 172 .. 1 98 [] 78.3 6.9e-24
17 v3_1_0:1l3kA02 v3_1_0:1l3kA02 Unknown 91 169 .. 1 78 [] 81.9 1.0e-23
18 v3_1_0:1fxlA02 v3_1_0:1fxlA02 Unknown 95 171 .. 1 77 [] 83.3 2.0e-23
19 v3_1_0:1s79A00 v3_1_0:1s79A00 Unknown 82 186 .. 1 103 [] 86.5 2.7e-23
20 v3_1_0:1x5uA01 v3_1_0:1x5uA01 Unknown 91 170 .. 1 80 [] 83.4 3.3e-23
21 v3_1_0:2hzcA00 v3_1_0:2hzcA00 Unknown 87 169 .. 1 87 [] 80.7 6.7e-23
22 v3_1_0:1oiaB00 v3_1_0:1oiaB00 Unknown 84 174 .. 1 95 [] 82.3 9.5e-23
23 v3_1_0:1fjeB02 v3_1_0:1fjeB02 Unknown 85 173 .. 1 84 [] 77.7 1.2e-22
24 v3_1_0:1fxlA01 v3_1_0:1fxlA01 Unknown 95 165 .. 1 71 [] 79.7 6.4e-22
25 v3_1_0:1o0pA00 v3_1_0:1o0pA00 Unknown 79 172 .. 1 104 [] 75.8 3.1e-21
26 v3_1_0:1qm9A02 v3_1_0:1qm9A02 Unknown 82 173 .. 1 89 [] 71.5 3.9e-21
27 v3_1_0:1sjrA00 v3_1_0:1sjrA00 Unknown 86 175 .. 1 108 [] 72.6 1.4e-20
28 v3_1_0:2u1a000 v3_1_0:2u1a000 Unknown 80 171 .. 1 88 [] 70.9 4.1e-20
29 v3_1_0:1jmtA00 v3_1_0:1jmtA00 Unknown 260 344 .. 1 104 [] 64.1 1.1e-18
30 v3_1_0:1o0pA00 v3_1_0:1o0pA00 Unknown 257 354 .. 1 104 [] 62.8 1.5e-17
31 v3_1_0:1cvjH02 v3_1_0:1cvjH02 Unknown 82 148 .. 1 65 [] 61.5 3.8e-16
32 v3_1_0:3sxlA02 v3_1_0:3sxlA02 Unknown 88 142 .. 1 55 [] 57.2 1.6e-15
33 v3_1_0:1whvA00 v3_1_0:1whvA00 Unknown 94 172 .. 17 100 .] 48 2.5e-13
34 v3_1_0:1rk8A00 v3_1_0:1rk8A00 Unknown 3 78 .. 15 100 .] 43.6 3.7e-13
35 v3_1_0:1sxl000 v3_1_0:1sxl000 Unknown 3 78 .. 21 97 .] 46.2 3.8e-13
36 v3_1_0:1h2vZ00 v3_1_0:1h2vZ00 Unknown 3 80 .. 15 93 .] 43.5 4.0e-13
37 v3_1_0:1jmtA00 v3_1_0:1jmtA00 Unknown 2 72 .. 34 104 .] 45.2 4.3e-13
38 v3_1_0:1l3kA01 v3_1_0:1l3kA01 Unknown 3 73 .. 21 91 .] 46.2 5.1e-13
39 v3_1_0:1fjeB01 v3_1_0:1fjeB01 Unknown 3 74 .. 11 81 .] 44.9 9.8e-13
40 v3_1_0:1l3kA02 v3_1_0:1l3kA02 Unknown 2 71 .. 9 78 .] 44.4 1.3e-12
41 v3_1_0:1n54B00 v3_1_0:1n54B00 Unknown 3 77 .. 47 126 .] 43.8 2.7e-12
42 v3_1_0:2u2fA00 v3_1_0:2u2fA00 Unknown 2 78 .. 8 85 .] 42.9 2.7e-12
43 v3_1_0:2hzcA00 v3_1_0:2hzcA00 Unknown 3 71 .. 14 87 .] 43 5.8e-12
44 v3_1_0:1p1tA00 v3_1_0:1p1tA00 Unknown 3 77 .. 16 104 .] 44.3 6.8e-12
45 v3_1_0:1hl6C00 v3_1_0:1hl6C00 Unknown 3 77 .. 80 165 .] 41.3 1.6e-11
46 v3_1_0:1nu4A00 v3_1_0:1nu4A00 Unknown 3 82 .. 16 97 .] 38.7 1.7e-11
47 v3_1_0:1o0pA00 v3_1_0:1o0pA00 Unknown 2 77 .. 21 104 .] 40.9 2.6e-11
48 v3_1_0:1x5uA01 v3_1_0:1x5uA01 Unknown 2 72 .. 9 80 .] 41.5 2.8e-11
49 v3_1_0:1cvjA01 v3_1_0:1cvjA01 Unknown 2 71 .. 17 87 .] 41.1 3.1e-11
50 v3_1_0:1no8A00 v3_1_0:1no8A00 Unknown 2 73 .. 7 78 .] 38.4 4.1e-11
51 v3_1_0:1qm9A01 v3_1_0:1qm9A01 Unknown 3 84 .. 11 98 .] 36 7.1e-11
52 v3_1_0:1s79A00 v3_1_0:1s79A00 Unknown 3 80 .. 19 103 .] 41.1 7.8e-11
53 v3_1_0:1fxlA02 v3_1_0:1fxlA02 Unknown 3 73 .. 6 77 .] 39.5 8.1e-11
54 v3_1_0:1cvjG02 v3_1_0:1cvjG02 Unknown 3 77 .. 19 103 .] 39.9 8.9e-11
55 v3_1_0:1oiaB00 v3_1_0:1oiaB00 Unknown 2 79 .. 16 95 .] 38.6 1.8e-10
56 v3_1_0:1fjeB02 v3_1_0:1fjeB02 Unknown 3 75 .. 16 84 .] 35.6 3.6e-10
57 v3_1_0:1sjrA00 v3_1_0:1sjrA00 Unknown 3 84 .. 15 108 .] 35.4 6.8e-10
58 v3_1_0:1fxlA01 v3_1_0:1fxlA01 Unknown 2 66 .. 5 71 .] 34.5 3.7e-09
59 v3_1_0:1qm9A02 v3_1_0:1qm9A02 Unknown 3 75 .. 19 89 .] 30.9 5.6e-09
60 v3_1_0:2u1a000 v3_1_0:2u1a000 Unknown 2 73 .. 20 88 .] 32.4 5.8e-09
61 RRM_1 PF00076 DOMAIN 2 67 .. 1 73 [] 37.2 6.6e-08
62 v3_1_0:3sxlA02 v3_1_0:3sxlA02 Unknown 2 44 .. 12 55 .] 26.4 9.4e-07
63 v3_1_0:1qm9A01 v3_1_0:1qm9A01 Unknown 284 346 .. 18 98 .] 21.6 2.0e-06
64 v3_1_0:1cvjH02 v3_1_0:1cvjH02 Unknown 2 51 .. 18 65 .] 25.8 2.3e-06
65 v3_1_0:1sjrA00 v3_1_0:1sjrA00 Unknown 285 342 .. 22 108 .] 22.3 3.8e-06
66 v3_1_0:1whvA00 v3_1_0:1whvA00 Unknown 2 84 .. 22 100 .] 22 5.9e-06
67 v3_1_0:1hl6C00 v3_1_0:1hl6C00 Unknown 284 359 .. 86 165 .] 21.5 6.7e-06
68 v3_1_0:1rk8A00 v3_1_0:1rk8A00 Unknown 284 359 .. 21 100 .] 19.1 1.2e-05
69 v3_1_0:1fjeB02 v3_1_0:1fjeB02 Unknown 284 347 .. 22 84 .] 20 1.6e-05
70 v3_1_0:1oiaB00 v3_1_0:1oiaB00 Unknown 284 344 .. 23 95 .] 19.2 .00005
71 v3_1_0:1qm9A02 v3_1_0:1qm9A02 Unknown 285 342 .. 26 89 .] 17.7 5.3e-05
72 v3_1_0:1sxl000 v3_1_0:1sxl000 Unknown 284 343 .. 27 97 .] 18 .00007
73 v3_1_0:1nu4A00 v3_1_0:1nu4A00 Unknown 284 344 .. 22 97 .] 16.6 .00009
74 v3_1_0:1h2vZ00 v3_1_0:1h2vZ00 Unknown 284 343 .. 21 93 .] 15.7 .00013
75 v3_1_0:2hzcA00 v3_1_0:2hzcA00 Unknown 284 343 .. 20 87 .] 16.7 .00025
76 v3_1_0:1n54B00 v3_1_0:1n54B00 Unknown 284 343 .. 53 126 .] 15.6 .00032
77 v3_1_0:1p1tA00 v3_1_0:1p1tA00 Unknown 284 342 .. 22 104 .] 16.4 .00034
78 v3_1_0:2u2fA00 v3_1_0:2u2fA00 Unknown 284 342 .. 15 85 .] 15.4 .00035
79 v3_1_0:1cvjA01 v3_1_0:1cvjA01 Unknown 284 343 .. 24 87 .] 15.6 .00061
80 v3_1_0:1s79A00 v3_1_0:1s79A00 Unknown 284 344 .. 25 103 .] 14.9 .0011
81 v3_1_0:2u1a000 v3_1_0:2u1a000 Unknown 284 342 .. 27 88 .] 13.7 .0014
82 v3_1_0:1fxlA01 v3_1_0:1fxlA01 Unknown 284 339 .. 12 71 .] 14.3 .0019
83 v3_1_0:1fxlA02 v3_1_0:1fxlA02 Unknown 284 343 .. 12 77 .] 13.8 .002
84 v3_1_0:1l3kA02 v3_1_0:1l3kA02 Unknown 284 343 .. 16 78 .] 13.2 .0022
85 v3_1_0:1x5uA01 v3_1_0:1x5uA01 Unknown 284 344 .. 16 80 .] 13.4 .0028
86 v3_1_0:1no8A00 v3_1_0:1no8A00 Unknown 284 343 .. 14 78 .] 12 .0035
87 v3_1_0:1l3kA01 v3_1_0:1l3kA01 Unknown 284 343 .. 27 91 .] 12 .0045
88 v3_1_0:1cvjG02 v3_1_0:1cvjG02 Unknown 284 343 .. 25 103 .] 11.8 .006
89 v3_1_0:1whvA00 v3_1_0:1whvA00 Unknown 284 343 .. 29 100 .] 8.3 .046
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of RRM_1...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


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