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   BC013200;WT2001B
Protein Sequence Comparative Analysis   (PSCA)
 
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BC013200    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 Pkinase_Tyr PF07714 DOMAIN 245 524 .. 1 270 [] 488.9 0
2 v3_1_0:1xbbA02 v3_1_0:1xbbA02 Unknown 349 539 .] 1 193 [] 170.9 9.3e-55
3 v3_1_0:2i6lA02 v3_1_0:2i6lA02 Unknown 352 522 .. 1 215 [] 151.9 1.2e-52
4 v3_1_0:1opjA02 v3_1_0:1opjA02 Unknown 349 524 .. 1 180 [] 172 1.7e-51
5 v3_1_0:2src004 v3_1_0:2src004 Unknown 314 524 .. 1 175 [] 163.6 2.4e-51
6 v3_1_0:1wbsA02 v3_1_0:1wbsA02 Unknown 352 524 .. 1 209 [] 149.3 3.8e-50
7 v3_1_0:1jksA02 v3_1_0:1jksA02 Unknown 352 524 .. 1 193 [] 151.4 1.2e-49
8 v3_1_0:1p4oA02 v3_1_0:1p4oA02 Unknown 348 539 .] 1 214 [] 174.9 2.4e-49
9 v3_1_0:1t46A02 v3_1_0:1t46A02 Unknown 295 524 .. 1 194 [] 167.2 4.9e-49
10 v3_1_0:1tkiA02 v3_1_0:1tkiA02 Unknown 351 539 .] 1 192 [. 160.1 8.3e-49
11 v3_1_0:1gz8A02 v3_1_0:1gz8A02 Unknown 313 524 .. 1 212 [] 154.9 9.5e-49
12 v3_1_0:1rdqE01 v3_1_0:1rdqE01 Unknown 290 539 .] 1 219 [] 166.5 2.5e-48
13 v3_1_0:1o6yA02 v3_1_0:1o6yA02 Unknown 350 524 .. 1 183 [] 155.5 4.1e-48
14 v3_1_0:1s9jA02 v3_1_0:1s9jA02 Unknown 350 539 .] 1 236 [] 165.5 7.0e-48
15 v3_1_0:1kwpB02 v3_1_0:1kwpB02 Unknown 349 539 .] 1 225 [] 166.3 1.8e-47
16 v3_1_0:1s9iA02 v3_1_0:1s9iA02 Unknown 352 539 .] 1 257 [] 162.4 1.9e-47
17 v3_1_0:1kobA02 v3_1_0:1kobA02 Unknown 351 539 .] 1 192 [. 153.8 2.5e-46
18 v3_1_0:1o6lA01 v3_1_0:1o6lA01 Unknown 353 539 .] 1 194 [] 154.3 4.1e-46
19 v3_1_0:1vjyA02 v3_1_0:1vjyA02 Unknown 351 532 .. 1 216 [] 159.2 7.1e-46
20 v3_1_0:2bfyA02 v3_1_0:2bfyA02 Unknown 350 524 .. 1 174 [] 150.3 7.6e-46
21 v3_1_0:1uwhA02 v3_1_0:1uwhA02 Unknown 351 533 .. 1 190 [] 155.6 3.6e-45
22 v3_1_0:2j0iA02 v3_1_0:2j0iA02 Unknown 349 539 .] 1 194 [] 154 4.5e-45
23 v3_1_0:2izrA02 v3_1_0:2izrA02 Unknown 351 539 .] 1 215 [] 153.3 1.2e-44
24 v3_1_0:1q3dA02 v3_1_0:1q3dA02 Unknown 310 539 .] 1 219 [] 157.3 2.5e-44
25 SH2 PF00017 DOMAIN 127 209 .. 1 82 [] 157.9 3.1e-44
26 v3_1_0:1ia8A02 v3_1_0:1ia8A02 Unknown 362 524 .. 1 192 [] 149.9 1.0e-43
27 v3_1_0:1wakA02 v3_1_0:1wakA02 Unknown 308 522 .. 1 282 [] 138.1 1.2e-42
28 v3_1_0:1xwsA02 v3_1_0:1xwsA02 Unknown 350 524 .. 1 189 [] 144.9 7.1e-42
29 v3_1_0:1ymiA01 v3_1_0:1ymiA01 Unknown 348 522 .. 17 234 .] 138.8 7.6e-41
30 v3_1_0:1t4hA02 v3_1_0:1t4hA02 Unknown 348 524 .. 1 181 [] 134.2 9.9e-41
31 Pkinase PF00069 DOMAIN 245 527 .. 1 287 [] 136.9 6.5e-38
32 v3_1_0:1lkkA00 v3_1_0:1lkkA00 Unknown 122 226 .. 1 105 [] 121.7 1.9e-37
33 v3_1_0:1uurA04 v3_1_0:1uurA04 Unknown 115 250 .. 1 133 [] 122 4.0e-35
34 v3_1_0:2huyA00 v3_1_0:2huyA00 Unknown 120 242 .. 1 116 [] 119 8.6e-33
35 v3_1_0:1a81E01 v3_1_0:1a81E01 Unknown 121 226 .. 1 101 [] 111.4 1.9e-32
36 v3_1_0:1nrvA00 v3_1_0:1nrvA00 Unknown 121 226 .. 1 105 [] 106.1 5.8e-32
37 v3_1_0:1luiA00 v3_1_0:1luiA00 Unknown 119 227 .. 1 110 [] 109.9 3.4e-31
38 v3_1_0:1opkA02 v3_1_0:1opkA02 Unknown 127 235 .. 1 102 [] 103.3 5.8e-31
39 v3_1_0:2iugA00 v3_1_0:2iugA00 Unknown 115 236 .. 1 120 [] 107.2 6.5e-31
40 v3_1_0:1d4tA00 v3_1_0:1d4tA00 Unknown 122 226 .. 1 104 [] 100.5 3.0e-30
41 v3_1_0:1qadA00 v3_1_0:1qadA00 Unknown 117 230 .. 1 111 [] 103.3 7.0e-30
42 v3_1_0:1r1pB00 v3_1_0:1r1pB00 Unknown 117 224 .. 1 100 [] 97.9 1.4e-29
43 v3_1_0:1xa6A01 v3_1_0:1xa6A01 Unknown 105 219 .. 1 104 [] 102 4.4e-29
44 v3_1_0:2shpA02 v3_1_0:2shpA02 Unknown 125 227 .. 1 106 [] 105.2 1.8e-28
45 v3_1_0:1mil000 v3_1_0:1mil000 Unknown 119 233 .. 1 104 [] 103.4 2.2e-28
46 v3_1_0:1jwoA00 v3_1_0:1jwoA00 Unknown 122 226 .. 1 97 [] 95 6.9e-28
47 v3_1_0:1ayaA00 v3_1_0:1ayaA00 Unknown 124 231 .. 1 101 [] 99.9 1.3e-27
48 v3_1_0:1ju5A00 v3_1_0:1ju5A00 Unknown 126 225 .. 1 109 [] 97.6 1.5e-26
49 v3_1_0:1rpyB00 v3_1_0:1rpyB00 Unknown 115 216 .. 1 97 [] 93.5 1.6e-26
50 v3_1_0:1b6cB01 v3_1_0:1b6cB01 Unknown 202 320 .. 1 123 [] 82.3 9.4e-26
51 v3_1_0:2pldA00 v3_1_0:2pldA00 Unknown 117 230 .. 1 105 [] 90.5 1.2e-25
52 v3_1_0:1rjbA01 v3_1_0:1rjbA01 Unknown 199 320 .. 1 132 [] 78.1 6.6e-23
53 v3_1_0:1fmk003 v3_1_0:1fmk003 Unknown 237 322 .. 1 86 [] 79.1 1.2e-22
54 v3_1_0:1vjyA01 v3_1_0:1vjyA01 Unknown 241 320 .. 1 84 [] 72 4.3e-21
55 v3_1_0:1u4dA01 v3_1_0:1u4dA01 Unknown 226 318 .. 1 101 [] 73.6 4.9e-21
56 v3_1_0:1p4oA01 v3_1_0:1p4oA01 Unknown 219 317 .. 1 108 [] 73.2 5.4e-21
57 v3_1_0:1jegA00 v3_1_0:1jegA00 Unknown 53 134 .. 1 83 [] 67.3 8.0e-21
58 v3_1_0:2fb8A01 v3_1_0:2fb8A01 Unknown 231 320 .. 1 91 [] 72.6 1.3e-20
59 v3_1_0:1tvoA01 v3_1_0:1tvoA01 Unknown 221 396 .. 1 139 [] 76.9 1.8e-20
60 v3_1_0:1mp8A01 v3_1_0:1mp8A01 Unknown 229 318 .. 1 96 [] 73 2.5e-20
61 v3_1_0:1o6lA02 v3_1_0:1o6lA02 Unknown 239 405 .. 1 137 [] 72.6 3.8e-20
62 v3_1_0:1xbbA01 v3_1_0:1xbbA01 Unknown 227 318 .. 1 98 [] 72.1 4.1e-20
63 v3_1_0:1r1wA01 v3_1_0:1r1wA01 Unknown 228 319 .. 1 99 [] 70.4 5.9e-20
64 SH3_1 PF00018 DOMAIN 64 119 .. 1 59 [] 76.4 1.0e-19
65 v3_1_0:1opjB01 v3_1_0:1opjB01 Unknown 226 318 .. 1 95 [] 73.5 1.3e-19
66 v3_1_0:1t46A01 v3_1_0:1t46A01 Unknown 233 318 .. 1 96 [] 69.9 2.8e-19
67 v3_1_0:1m14A01 v3_1_0:1m14A01 Unknown 230 318 .. 1 96 [] 67.2 3.4e-19
68 v3_1_0:1uffA00 v3_1_0:1uffA00 Unknown 59 150 .. 1 93 [] 66.8 1.0e-18
69 v3_1_0:1n5zB00 v3_1_0:1n5zB00 Unknown 50 135 .. 1 92 [] 68.5 4.3e-18
70 v3_1_0:1lufA01 v3_1_0:1lufA01 Unknown 231 318 .. 1 97 [] 63.9 1.2e-17
71 v3_1_0:1udlA00 v3_1_0:1udlA00 Unknown 26 128 .. 1 98 [] 59.9 1.8e-17
72 v3_1_0:1t0hA00 v3_1_0:1t0hA00 Unknown 43 138 .. 1 105 [] 59.3 3.2e-17
73 v3_1_0:1jxmA01 v3_1_0:1jxmA01 Unknown 57 151 .. 1 100 [] 62.1 4.4e-17
74 v3_1_0:1fvrA01 v3_1_0:1fvrA01 Unknown 219 318 .. 1 107 [] 62.9 1.0e-16
75 v3_1_0:1q5kA01 v3_1_0:1q5kA01 Unknown 229 320 .. 1 97 [] 57.3 1.3e-16
76 v3_1_0:1kobA01 v3_1_0:1kobA01 Unknown 215 320 .. 1 109 [] 56.6 5.6e-16
77 v3_1_0:2i6lA01 v3_1_0:2i6lA01 Unknown 233 334 .. 1 105 [] 54.6 6.5e-16
78 v3_1_0:1ywrA01 v3_1_0:1ywrA01 Unknown 222 348 .. 1 140 [] 56 9.0e-16
79 v3_1_0:1t4hB01 v3_1_0:1t4hB01 Unknown 234 317 .. 1 93 [] 53.9 1.5e-15
80 v3_1_0:1uhfA00 v3_1_0:1uhfA00 Unknown 56 126 .. 1 69 [] 56.3 1.6e-15
81 v3_1_0:1blxA01 v3_1_0:1blxA01 Unknown 243 320 .. 1 92 [] 52.4 2.3e-15
82 v3_1_0:1pht000 v3_1_0:1pht000 Unknown 59 127 .. 1 85 [] 54.6 2.7e-15
83 v3_1_0:1awj000 v3_1_0:1awj000 Unknown 44 120 .. 1 77 [] 55.8 5.9e-15
84 v3_1_0:1ia8A01 v3_1_0:1ia8A01 Unknown 237 327 .. 1 97 [] 52.1 6.2e-15
85 v3_1_0:1vytA01 v3_1_0:1vytA01 Unknown 42 185 .. 1 138 [] 44.6 8.0e-15
86 v3_1_0:2bfyA01 v3_1_0:2bfyA01 Unknown 230 319 .. 1 96 [] 53.6 8.2e-15
87 v3_1_0:2j0iA01 v3_1_0:2j0iA01 Unknown 213 318 .. 1 109 [] 52.6 8.6e-15
88 v3_1_0:1pme001 v3_1_0:1pme001 Unknown 236 337 .. 1 110 [] 51.7 8.8e-15
89 v3_1_0:1qcfA01 v3_1_0:1qcfA01 Unknown 62 124 .. 1 63 [] 54.3 9.2e-15
90 v3_1_0:1ad5A01 v3_1_0:1ad5A01 Unknown 62 124 .. 1 63 [] 54.7 1.4e-14
91 v3_1_0:1wbsA01 v3_1_0:1wbsA01 Unknown 239 320 .. 1 93 [] 48.4 3.6e-14
92 v3_1_0:1wakA01 v3_1_0:1wakA01 Unknown 228 318 .. 1 94 [] 47.1 4.5e-14
93 v3_1_0:1aww000 v3_1_0:1aww000 Unknown 56 122 .. 1 67 [] 52.3 4.9e-14
94 v3_1_0:1gcqC00 v3_1_0:1gcqC00 Unknown 54 121 .. 1 70 [] 50.1 6.3e-14
95 v3_1_0:1opkA01 v3_1_0:1opkA01 Unknown 64 126 .. 1 63 [] 50.9 7.2e-14
96 v3_1_0:1a06001 v3_1_0:1a06001 Unknown 226 318 .. 1 97 [] 49.3 7.8e-14
97 v3_1_0:1gz8A01 v3_1_0:1gz8A01 Unknown 241 320 .. 1 85 [] 49.6 9.4e-14
98 v3_1_0:1xwsA01 v3_1_0:1xwsA01 Unknown 240 320 .. 1 92 [] 47.3 1.5e-13
99 v3_1_0:1jksA01 v3_1_0:1jksA01 Unknown 240 321 .. 1 91 [] 48.4 1.9e-13
100 v3_1_0:1jo8A00 v3_1_0:1jo8A00 Unknown 64 120 .. 1 58 [] 46.1 3.4e-13
101 v3_1_0:1yhvA01 v3_1_0:1yhvA01 Unknown 224 318 .. 1 98 [] 47.6 3.5e-13
102 v3_1_0:1tkiA01 v3_1_0:1tkiA01 Unknown 239 320 .. 1 84 [] 46.9 4.9e-13
103 v3_1_0:1spkA00 v3_1_0:1spkA00 Unknown 57 125 .. 1 72 [] 46.2 5.6e-13
104 v3_1_0:1wx6A01 v3_1_0:1wx6A01 Unknown 61 124 .. 1 66 [] 47.2 8.7e-13
105 v3_1_0:1ov3A02 v3_1_0:1ov3A02 Unknown 64 121 .. 1 57 [] 42.8 9.5e-13
106 v3_1_0:1ng2A02 v3_1_0:1ng2A02 Unknown 50 118 .. 1 68 [] 47.4 1.1e-12
107 v3_1_0:1y0mA00 v3_1_0:1y0mA00 Unknown 61 121 .. 1 61 [] 42.6 1.5e-12
108 v3_1_0:1x6bA01 v3_1_0:1x6bA01 Unknown 62 125 .. 1 64 [] 45 1.6e-12
109 v3_1_0:1s9jA01 v3_1_0:1s9jA01 Unknown 238 319 .. 1 86 [] 45.2 1.8e-12
110 v3_1_0:1ark000 v3_1_0:1ark000 Unknown 61 119 .. 1 60 [] 42.3 2.0e-12
111 v3_1_0:1o6yA01 v3_1_0:1o6yA01 Unknown 237 318 .. 1 92 [] 43.3 2.1e-12
112 v3_1_0:1bb9000 v3_1_0:1bb9000 Unknown 52 120 .. 1 83 [] 46.6 2.5e-12
113 v3_1_0:1i07A00 v3_1_0:1i07A00 Unknown 63 123 .. 1 60 [] 45.3 3.1e-12
114 v3_1_0:1tuc000 v3_1_0:1tuc000 Unknown 75 138 .. 1 63 [] 44 3.3e-12
115 v3_1_0:1ycsB02 v3_1_0:1ycsB02 Unknown 58 119 .. 1 64 [] 45.1 7.1e-12
116 v3_1_0:1w70A00 v3_1_0:1w70A00 Unknown 60 120 .. 1 60 [] 39.8 7.4e-12
117 v3_1_0:1ymiA02 v3_1_0:1ymiA02 Unknown 231 318 .. 1 91 [] 39.3 9.1e-12
118 v3_1_0:1i1jB00 v3_1_0:1i1jB00 Unknown 42 130 .. 1 108 [] 41.6 1.0e-11
119 v3_1_0:1pwt000 v3_1_0:1pwt000 Unknown 59 120 .. 1 61 [] 44.7 1.1e-11
120 v3_1_0:1ug1A00 v3_1_0:1ug1A00 Unknown 47 135 .. 1 92 [] 43.7 1.2e-11
121 v3_1_0:1nm7A00 v3_1_0:1nm7A00 Unknown 57 119 .. 1 69 [] 44.6 1.3e-11
122 v3_1_0:1uu3A02 v3_1_0:1uu3A02 Unknown 236 322 .. 1 93 [] 40.2 1.5e-11
123 v3_1_0:1griA01 v3_1_0:1griA01 Unknown 64 117 .. 1 54 [] 42.4 2.6e-11
124 v3_1_0:1sshA00 v3_1_0:1sshA00 Unknown 61 119 .. 1 60 [] 42.3 3.6e-11
125 v3_1_0:1phk001 v3_1_0:1phk001 Unknown 227 318 .. 1 105 [] 38.5 4.3e-11
126 v3_1_0:1rdqE02 v3_1_0:1rdqE02 Unknown 235 326 .. 1 98 [. 40.7 5.7e-11
127 v3_1_0:1zx6A00 v3_1_0:1zx6A00 Unknown 62 120 .. 1 58 [] 41.6 6.2e-11
128 v3_1_0:1ckaA00 v3_1_0:1ckaA00 Unknown 63 119 .. 1 57 [] 41.1 9.3e-11
129 v3_1_0:1ov3A01 v3_1_0:1ov3A01 Unknown 64 119 .. 1 55 [] 38.5 1.5e-10
130 v3_1_0:2csqA01 v3_1_0:2csqA01 Unknown 63 119 .. 1 65 [] 39.2 2.5e-10
131 SH3_2 PF07653 DOMAIN 65 119 .. 1 72 [] 44 5.8e-10
132 v3_1_0:1zlmA00 v3_1_0:1zlmA00 Unknown 61 119 .. 1 58 [] 38.1 6.0e-10
133 v3_1_0:1nxkA01 v3_1_0:1nxkA01 Unknown 240 318 .. 1 82 [] 33.8 7.8e-10
134 v3_1_0:2izrA01 v3_1_0:2izrA01 Unknown 246 319 .. 12 87 .] 33.5 8.4e-10
135 v3_1_0:1ri9A00 v3_1_0:1ri9A00 Unknown 64 124 .. 21 83 .] 32.7 2.8e-09
136 v3_1_0:1zrzA01 v3_1_0:1zrzA01 Unknown 240 348 .. 1 116 [. 34.5 3.9e-09
137 v3_1_0:1g2bA00 v3_1_0:1g2bA00 Unknown 43 101 .. 1 62 [] 31.6 2.7e-07
138 v3_1_0:1ng2A01 v3_1_0:1ng2A01 Unknown 53 104 .. 1 53 [] 28.1 3.1e-07
139 v3_1_0:1ckiA01 v3_1_0:1ckiA01 Unknown 248 319 .. 1 64 [] 15.8 .00018
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of Pkinase_Tyr...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


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