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   AF124247;AF124247
Protein Sequence Comparative Analysis   (PSCA)
 
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AF124247    PFAM and Other Family Domains



   Single domain is shown with a single color      Overlapping domains are shown as mixed colors
Index Model Accession Type seq_f seq_t seq_b hmm_f hmm_t hmm_b Bitscore E_value
1 v3_1_0:1nrlB00 v3_1_0:1nrlB00 Unknown 102 541 .] 1 293 [] 292.2 1.9e-92
2 v3_1_0:1ymtA00 v3_1_0:1ymtA00 Unknown 294 541 .] 1 246 [] 245.7 1.7e-71
3 v3_1_0:2ax6A00 v3_1_0:2ax6A00 Unknown 295 540 .. 1 256 [] 224.8 1.8e-69
4 v3_1_0:2h79A00 v3_1_0:2h79A00 Unknown 147 541 .] 1 269 [] 232 1.5e-66
5 v3_1_0:2awhB00 v3_1_0:2awhB00 Unknown 131 540 .. 1 268 [] 229.9 3.3e-66
6 v3_1_0:1mznA00 v3_1_0:1mznA00 Unknown 292 540 .. 1 240 [] 212.9 1.4e-64
7 v3_1_0:1xpcA00 v3_1_0:1xpcA00 Unknown 296 540 .. 1 248 [] 219.5 3.5e-64
8 v3_1_0:2gpuA00 v3_1_0:2gpuA00 Unknown 296 540 .. 1 230 [] 215.8 8.7e-63
9 v3_1_0:1g2nA00 v3_1_0:1g2nA00 Unknown 298 540 .. 1 264 [] 215.6 1.0e-62
10 v3_1_0:1pzlA00 v3_1_0:1pzlA00 Unknown 295 540 .. 1 237 [] 216.3 1.9e-62
11 v3_1_0:1fcyA00 v3_1_0:1fcyA00 Unknown 297 537 .. 1 236 [] 205.4 4.6e-62
12 v3_1_0:1pq9B00 v3_1_0:1pq9B00 Unknown 286 540 .. 1 253 [] 206.2 1.3e-61
13 v3_1_0:1ovlB00 v3_1_0:1ovlB00 Unknown 303 539 .. 1 236 [] 200.4 1.2e-58
14 v3_1_0:1r1kD00 v3_1_0:1r1kD00 Unknown 294 539 .. 1 246 [] 189.9 1.4e-57
15 v3_1_0:1ie9A00 v3_1_0:1ie9A00 Unknown 272 541 .] 1 259 [] 189.9 7.4e-57
16 Hormone_recep PF00104 DOMAIN 350 535 .. 1 197 [] 199.2 1.1e-56
17 v3_1_0:1oshA00 v3_1_0:1oshA00 Unknown 289 539 .. 1 232 [] 190.5 3.7e-56
18 v3_1_0:1nq7A00 v3_1_0:1nq7A00 Unknown 278 537 .. 1 244 [] 190.4 7.1e-56
19 zf-C4 PF00105 DOMAIN 84 159 .. 1 77 [] 185.8 1.2e-52
20 v3_1_0:2a66A00 v3_1_0:2a66A00 Unknown 75 187 .. 1 113 [] 117.8 3.2e-37
21 v3_1_0:2nllB00 v3_1_0:2nllB00 Unknown 83 183 .. 1 103 [] 105.6 5.2e-32
22 v3_1_0:1dszA00 v3_1_0:1dszA00 Unknown 80 165 .. 1 86 [] 95.5 1.5e-29
23 v3_1_0:2c7aA00 v3_1_0:2c7aA00 Unknown 82 159 .. 1 78 [] 98 1.0e-28
24 v3_1_0:2nllA00 v3_1_0:2nllA00 Unknown 86 151 .. 1 66 [] 84.8 2.0e-26
25 v3_1_0:1ptq000 v3_1_0:1ptq000 Unknown 85 122 .. 13 50 .] 9.3 .017
   From   Expect (E_value cut-off) 
FSS for  functional & structural coverage of v3_1_0:1nrlB00...


Notes
The types of Pfam domains and families include Family, Domain, Repeat and Motif. You can retrieve sequences that cover the Pfam model from JCSG sequence pool. The structural coverage displays the informatiom of seed sequences for the Pfam model and showes if the Pfam model is covered by PDB sequences or JCSG targets.
Domain and family search is done using HMMER program and PFAM database with expect (E-value cut-off) at 0.05. The Pfam protein families database. A. Bateman, E. Birney, R. Durbin, S.R. Eddy, K.L. Howe, and E.L.L. Sonnhammer Nucleic Acids Research, 28:263-266, 2000.


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