| Functional & Structural Space |
| Families:18030 |
- Before |
| Structures: |
- |
| 120840 of protein chains |
| 36729 of unique protein sequences |
| Method:hmmpfam |
- Threshold: gathering cut-off |
|
| Type |
Models |
PDB Coverage |
Covp(%) |
|
18030 |
4253 |
23.59 |
| DOMAIN |
2546 |
2067 |
81.19 |
| FAMILY |
6558 |
2118 |
32.30 |
| MOTIF |
61 |
23 |
37.70 |
| REPEAT |
153 |
45 |
29.41 |
|
8712 |
0 |
0.00 |
|
|
The space between function and structure is calculated based on
Pfam family & domain database, PDB biological macromolecular structure database and JCSG tracking and annotation database.
The program hmmpfam from HMMER package is used to search Pfam models within PDB protein sequences. You can retrieve Pfam families by filters as PDB or JCSG target coverage. The colors for coverage are associated with Pfam HMM scores (green:trusted cutoff, yellow:gathering threshold, red:noise cut off, no: no hit). The operators AND (whitespace between two words) and OR (comma between two words) are supported in the fields as keywords, model or protein accession.
|
| |
|
|
